Wall clock time and date at job start Tue Mar 31 2020 02:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47055 * 2 1 4 4 H 1.09001 * 115.56406 * 29.29827 * 3 2 1 5 5 C 1.52998 * 117.49764 * 243.60620 * 3 2 1 6 6 C 1.52997 * 60.00316 * 252.51332 * 5 3 2 7 7 H 1.08995 * 117.49783 * 107.49222 * 6 5 3 8 8 C 1.50707 * 117.49799 * 252.51191 * 6 5 3 9 9 O 1.21276 * 119.99586 * 68.60563 * 8 6 5 10 10 N 1.34771 * 119.99831 * 248.60822 * 8 6 5 11 11 C 1.46493 * 120.00186 * 179.97438 * 10 8 6 12 12 C 1.53000 * 109.47799 * 179.97438 * 11 10 8 13 13 H 1.08997 * 110.63549 * 56.68721 * 12 11 10 14 14 C 1.54328 * 110.71695 * 293.55054 * 12 11 10 15 15 N 1.47025 * 107.26975 * 219.44037 * 14 12 11 16 16 C 1.36931 * 125.64982 * 178.97809 * 15 14 12 17 17 H 1.07997 * 119.99758 * 349.93738 * 16 15 14 18 18 C 1.38813 * 120.00288 * 169.94213 * 16 15 14 19 19 N 1.31619 * 119.99729 * 350.41706 * 18 16 15 20 20 Si 1.86796 * 120.00411 * 170.42115 * 18 16 15 21 21 H 1.48491 * 109.47236 * 94.13640 * 20 18 16 22 22 H 1.48499 * 109.47030 * 214.14085 * 20 18 16 23 23 H 1.48507 * 109.47075 * 334.13728 * 20 18 16 24 24 C 1.47428 * 108.70067 * 358.93853 * 15 14 12 25 25 C 1.54907 * 104.83534 * 24.13036 * 24 15 14 26 26 H 1.09002 * 111.00536 * 81.05991 * 25 24 15 27 27 C 1.52997 * 111.00765 * 204.91723 * 25 24 15 28 28 H 1.09001 * 109.46964 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46924 * 299.99643 * 1 2 3 30 30 H 1.09000 * 109.47350 * 59.99848 * 1 2 3 31 31 H 1.09006 * 109.46842 * 239.99869 * 2 1 3 32 32 H 1.09000 * 109.47350 * 120.00152 * 2 1 3 33 33 H 1.08998 * 117.50075 * 0.02562 * 5 3 2 34 34 H 1.09001 * 117.49886 * 145.02173 * 5 3 2 35 35 H 0.97004 * 119.99978 * 0.02562 * 10 8 6 36 36 H 1.09005 * 109.47344 * 300.00260 * 11 10 8 37 37 H 1.09006 * 109.47266 * 59.99780 * 11 10 8 38 38 H 1.09004 * 109.88289 * 338.85455 * 14 12 11 39 39 H 1.09000 * 109.88361 * 99.86977 * 14 12 11 40 40 H 0.97005 * 120.00180 * 180.02562 * 19 18 16 41 41 H 1.09005 * 110.36255 * 142.96714 * 24 15 14 42 42 H 1.09004 * 110.37067 * 265.29113 * 24 15 14 43 43 H 1.08996 * 109.47227 * 172.19966 * 27 25 24 44 44 H 1.09000 * 109.46660 * 292.19133 * 27 25 24 45 45 H 1.09003 * 109.47083 * 52.19132 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.3883 2.1717 0.4812 5 6 2.8442 1.9074 -1.2157 6 6 3.5501 1.6578 0.1186 7 1 4.1803 0.7719 0.1966 8 6 4.0227 2.8621 0.8917 9 8 3.2155 3.6169 1.3913 10 7 5.3422 3.1001 1.0279 11 6 5.8016 4.2710 1.7790 12 6 7.3312 4.3069 1.7824 13 1 7.7177 4.3084 0.7632 14 6 7.9034 3.1171 2.5816 15 7 9.0589 3.6169 3.3411 16 6 9.8344 2.8770 4.1932 17 1 9.5249 1.8825 4.4790 18 6 11.0182 3.4050 4.6898 19 7 11.4921 4.5317 4.2016 20 14 11.9387 2.5166 6.0509 21 1 12.9747 1.6356 5.4546 22 1 12.5882 3.5123 6.9409 23 1 10.9850 1.6957 6.8395 24 6 9.2449 5.0465 3.0325 25 6 7.8497 5.5376 2.5721 26 1 7.2088 5.7512 3.4275 27 6 7.9719 6.7614 1.6620 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.0097 1.1857 -2.0156 34 1 2.7216 2.9425 -1.5343 35 1 5.9877 2.4965 0.6280 36 1 5.4176 5.1770 1.3101 37 1 5.4377 4.2104 2.8047 38 1 7.1477 2.7329 3.2667 39 1 8.2191 2.3289 1.8981 40 1 12.3195 4.9005 4.5483 41 1 9.5630 5.5885 3.9231 42 1 9.9738 5.1700 2.2315 43 1 6.9948 7.0015 1.2430 44 1 8.3372 7.6096 2.2410 45 1 8.6707 6.5450 0.8540 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001092980540.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:01 Heat of formation + Delta-G solvation = -31.425424 kcal Electronic energy + Delta-G solvation = -21920.889643 eV Core-core repulsion = 18745.004298 eV Total energy + Delta-G solvation = -3175.885345 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.12011 -39.73298 -38.01007 -36.01827 -34.67127 -32.91424 -32.56701 -30.86872 -27.93607 -26.96822 -25.43404 -24.63175 -23.87027 -21.82278 -21.41089 -21.24583 -20.56288 -18.86740 -18.21128 -17.24366 -16.81133 -16.47646 -15.93386 -15.75924 -15.50206 -15.31038 -14.96678 -14.68198 -14.36981 -14.04935 -13.53452 -13.47458 -13.43546 -13.34764 -13.09774 -12.95723 -12.77165 -12.65214 -12.47095 -12.17715 -11.97280 -11.90568 -11.86588 -11.65358 -11.42920 -11.38674 -11.20273 -11.00941 -10.75029 -10.64665 -10.08950 -8.86331 -7.89383 -5.23730 1.44744 1.46409 1.49690 1.55944 2.15404 2.48347 2.88072 3.29183 3.57745 3.66128 3.78814 3.80909 3.85952 3.90580 3.95877 4.23024 4.30506 4.36318 4.48310 4.50739 4.58593 4.60639 4.72725 4.78591 4.80644 4.84196 4.95082 4.97236 5.02403 5.06461 5.15167 5.17539 5.24871 5.31180 5.35409 5.39267 5.43284 5.48642 5.52189 5.65519 5.76918 6.19890 6.55857 7.07689 7.23902 7.75945 8.42362 9.22507 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.022904 B = 0.003261 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.176096 B = 8585.372652 C = 9500.055699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.091 4.091 3 C -0.124 4.124 4 H 0.092 0.908 5 C -0.132 4.132 6 C -0.198 4.198 7 H 0.146 0.854 8 C 0.536 3.464 9 O -0.590 6.590 10 N -0.713 5.713 11 C 0.145 3.855 12 C -0.088 4.088 13 H 0.095 0.905 14 C 0.138 3.862 15 N -0.628 5.628 16 C -0.245 4.245 17 H 0.077 0.923 18 C -0.063 4.063 19 N -0.947 5.947 20 Si 0.976 3.024 21 H -0.284 1.284 22 H -0.293 1.293 23 H -0.271 1.271 24 C 0.186 3.814 25 C -0.102 4.102 26 H 0.068 0.932 27 C -0.128 4.128 28 H 0.066 0.934 29 H 0.045 0.955 30 H 0.059 0.941 31 H 0.083 0.917 32 H 0.065 0.935 33 H 0.132 0.868 34 H 0.090 0.910 35 H 0.414 0.586 36 H 0.074 0.926 37 H 0.050 0.950 38 H 0.021 0.979 39 H 0.027 0.973 40 H 0.248 0.752 41 H 0.028 0.972 42 H 0.002 0.998 43 H 0.074 0.926 44 H 0.054 0.946 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.319 -5.775 -12.816 22.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.129 4.129 3 C -0.143 4.143 4 H 0.111 0.889 5 C -0.169 4.169 6 C -0.219 4.219 7 H 0.163 0.837 8 C 0.324 3.676 9 O -0.471 6.471 10 N -0.364 5.364 11 C 0.020 3.980 12 C -0.107 4.107 13 H 0.113 0.887 14 C 0.013 3.987 15 N -0.354 5.354 16 C -0.374 4.374 17 H 0.095 0.905 18 C -0.257 4.257 19 N -0.595 5.595 20 Si 0.804 3.196 21 H -0.211 1.211 22 H -0.219 1.219 23 H -0.195 1.195 24 C 0.061 3.939 25 C -0.122 4.122 26 H 0.086 0.914 27 C -0.185 4.185 28 H 0.085 0.915 29 H 0.065 0.935 30 H 0.078 0.922 31 H 0.101 0.899 32 H 0.084 0.916 33 H 0.150 0.850 34 H 0.108 0.892 35 H 0.250 0.750 36 H 0.092 0.908 37 H 0.068 0.932 38 H 0.039 0.961 39 H 0.045 0.955 40 H 0.057 0.943 41 H 0.047 0.953 42 H 0.020 0.980 43 H 0.093 0.907 44 H 0.074 0.926 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -17.688 -5.232 -12.343 22.194 hybrid contribution 1.394 -0.381 1.001 1.758 sum -16.295 -5.613 -11.342 20.632 Atomic orbital electron populations 1.21745 0.94945 1.02230 1.01811 1.21164 0.96477 0.92298 1.02922 1.22479 0.90694 0.99414 1.01686 0.88938 1.23197 1.00108 1.03419 0.90156 1.22362 0.98411 0.98238 1.02869 0.83674 1.20262 0.81937 0.86000 0.79369 1.90661 1.55032 1.50624 1.50801 1.45919 1.07115 1.28474 1.54892 1.21175 0.92459 0.88545 0.95781 1.22307 0.93320 0.95220 0.99835 0.88667 1.21486 0.88914 0.95290 0.93013 1.44793 1.32612 1.07345 1.50657 1.19378 1.00521 0.98689 1.18849 0.90521 1.25650 0.98134 0.99026 1.02880 1.70153 1.21997 1.22562 1.44811 0.85105 0.78349 0.77290 0.78819 1.21109 1.21938 1.19541 1.21248 0.92058 0.83881 0.96682 1.22446 0.96929 0.94775 0.98061 0.91362 1.21608 1.02219 0.95999 0.98695 0.91504 0.93535 0.92232 0.89858 0.91623 0.85010 0.89158 0.74974 0.90760 0.93189 0.96103 0.95460 0.94252 0.95331 0.97960 0.90722 0.92647 0.92650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.87 71.98 0.71 -1.11 16 2 C -0.09 -1.17 6.21 30.59 0.19 -0.98 16 3 C -0.12 -2.17 5.25 -10.79 -0.06 -2.22 16 4 H 0.09 2.10 7.60 -2.39 -0.02 2.08 16 5 C -0.13 -1.90 9.88 30.59 0.30 -1.60 16 6 C -0.20 -3.62 5.91 -11.54 -0.07 -3.69 16 7 H 0.15 2.00 8.14 -2.39 -0.02 1.98 16 8 C 0.54 14.16 7.61 87.66 0.67 14.83 16 9 O -0.59 -20.57 16.26 -3.02 -0.05 -20.61 16 10 N -0.71 -17.40 5.40 -463.07 -2.50 -19.90 16 11 C 0.14 4.08 4.99 86.38 0.43 4.52 16 12 C -0.09 -2.77 2.48 -9.60 -0.02 -2.79 16 13 H 0.10 2.74 8.04 -2.39 -0.02 2.72 16 14 C 0.14 5.50 6.53 86.73 0.57 6.07 16 15 N -0.63 -32.44 3.39 -691.96 -2.35 -34.78 16 16 C -0.25 -13.91 10.24 84.03 0.86 -13.05 16 17 H 0.08 4.19 7.85 -2.91 -0.02 4.17 16 18 C -0.06 -3.64 5.40 84.86 0.46 -3.18 16 19 N -0.95 -57.16 10.68 21.65 0.23 -56.93 16 20 Si 0.98 45.99 29.56 68.60 2.03 48.01 16 21 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 22 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 23 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 24 C 0.19 9.11 4.89 86.85 0.42 9.54 16 25 C -0.10 -3.66 3.09 -9.40 -0.03 -3.68 16 26 H 0.07 2.49 8.05 -2.39 -0.02 2.48 16 27 C -0.13 -3.66 9.31 71.98 0.67 -2.99 16 28 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.08 0.79 7.88 -2.38 -0.02 0.77 16 32 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.13 1.17 8.03 -2.39 -0.02 1.15 16 34 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.41 8.21 8.33 -92.71 -0.77 7.44 16 36 H 0.07 2.01 8.14 -2.38 -0.02 2.00 16 37 H 0.05 1.62 8.06 -2.38 -0.02 1.60 16 38 H 0.02 0.85 7.76 -2.38 -0.02 0.83 16 39 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.25 14.53 8.31 -92.70 -0.77 13.76 16 41 H 0.03 1.59 6.94 -2.38 -0.02 1.57 16 42 H 0.00 0.13 7.91 -2.38 -0.02 0.11 16 43 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 44 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.05 1.58 8.07 -2.39 -0.02 1.56 16 Total: -1.00 -71.40 362.53 2.64 -68.76 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: 0.17 Total: 15.81 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: 5.10 Total: -0.35 kcal Atomic # 7 Polarization: -107.00 SS G_CDS: -4.62 Total: -111.61 kcal Atomic # 8 Polarization: -20.57 SS G_CDS: -0.05 Total: -20.61 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.01 kcal Total: -71.40 2.64 -68.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092980540.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.332 kcal (2) G-P(sol) polarization free energy of solvation -71.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds