Wall clock time and date at job start Tue Mar 31 2020 02:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47163 * 2 1 4 4 H 1.09004 * 115.55297 * 29.32872 * 3 2 1 5 5 C 1.53078 * 117.49521 * 243.59964 * 3 2 1 6 6 C 1.53007 * 59.98479 * 252.51439 * 5 3 2 7 7 H 1.09001 * 117.49657 * 107.50021 * 6 5 3 8 8 C 1.50699 * 117.49559 * 252.49988 * 6 5 3 9 9 O 1.21277 * 120.00159 * 68.74535 * 8 6 5 10 10 N 1.34775 * 119.99429 * 248.74276 * 8 6 5 11 11 C 1.48146 * 127.83698 * 179.97438 * 10 8 6 12 12 C 1.54387 * 104.62266 * 219.60996 * 11 10 8 13 13 H 1.09000 * 110.43330 * 95.04732 * 12 11 10 14 14 C 1.52996 * 110.34407 * 217.26678 * 12 11 10 15 15 N 1.46504 * 109.46681 * 290.53038 * 14 12 11 16 16 C 1.36943 * 119.99781 * 180.02562 * 15 14 12 17 17 H 1.08002 * 119.99788 * 359.97438 * 16 15 14 18 18 C 1.38811 * 119.99622 * 180.27904 * 16 15 14 19 19 N 1.31614 * 120.00467 * 359.72375 * 18 16 15 20 20 Si 1.86801 * 119.99700 * 179.72266 * 18 16 15 21 21 H 1.48501 * 109.46896 * 89.99850 * 20 18 16 22 22 H 1.48499 * 109.47039 * 210.00011 * 20 18 16 23 23 H 1.48501 * 109.47275 * 329.99811 * 20 18 16 24 24 C 1.54284 * 104.95551 * 336.13344 * 12 11 10 25 25 H 1.09003 * 110.34450 * 241.12889 * 24 12 11 26 26 C 1.53006 * 110.34638 * 118.87297 * 24 12 11 27 27 C 1.48148 * 127.84113 * 359.97438 * 10 8 6 28 28 H 1.08998 * 109.47305 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47205 * 300.00240 * 1 2 3 30 30 H 1.09003 * 109.46976 * 59.99740 * 1 2 3 31 31 H 1.08997 * 109.47205 * 239.99760 * 2 1 3 32 32 H 1.09006 * 109.47081 * 119.99732 * 2 1 3 33 33 H 1.08994 * 117.51377 * 145.03770 * 5 3 2 34 34 H 1.09004 * 117.48641 * 359.97438 * 5 3 2 35 35 H 1.09002 * 110.40557 * 100.82104 * 11 10 8 36 36 H 1.09001 * 110.40948 * 338.39323 * 11 10 8 37 37 H 1.09006 * 109.47179 * 170.53655 * 14 12 11 38 38 H 1.08997 * 109.47540 * 50.53118 * 14 12 11 39 39 H 0.97000 * 120.00410 * 0.02562 * 15 14 12 40 40 H 0.96995 * 120.00147 * 180.02562 * 19 18 16 41 41 H 1.08998 * 109.47257 * 59.99231 * 26 24 12 42 42 H 1.08991 * 109.47469 * 180.02562 * 26 24 12 43 43 H 1.09004 * 109.46352 * 300.00054 * 26 24 12 44 44 H 1.08993 * 110.40728 * 21.60151 * 27 10 8 45 45 H 1.09007 * 110.40549 * 259.17281 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3884 2.1715 0.4817 5 6 2.8448 1.9075 -1.2163 6 6 3.5502 1.6578 0.1184 7 1 4.1803 0.7719 0.1965 8 6 4.0228 2.8620 0.8915 9 8 3.2158 3.6158 1.3928 10 7 5.3424 3.1011 1.0257 11 6 5.9946 4.2222 1.7416 12 6 7.1869 4.6169 0.8438 13 1 6.9110 5.4400 0.1847 14 6 8.3931 5.0047 1.7015 15 7 8.1195 6.2717 2.3842 16 6 9.0617 6.8205 3.2127 17 1 10.0064 6.3190 3.3630 18 6 8.8002 8.0180 3.8640 19 7 7.6488 8.6289 3.6812 20 14 10.0825 8.7626 5.0002 21 1 10.9681 9.6659 4.2224 22 1 9.4050 9.5358 6.0719 23 1 10.8936 7.6781 5.6094 24 6 7.5002 3.3513 0.0189 25 1 8.5134 3.0059 0.2247 26 6 7.3265 3.6333 -1.4749 27 6 6.4698 2.3024 0.4910 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8901 33 1 2.7227 2.9426 -1.5350 34 1 3.0109 1.1853 -2.0157 35 1 6.3472 3.8948 2.7196 36 1 5.3043 5.0593 1.8462 37 1 9.2706 5.1173 1.0647 38 1 8.5784 4.2260 2.4412 39 1 7.2709 6.7220 2.2494 40 1 7.4663 9.4659 4.1361 41 1 8.0059 4.4309 -1.7755 42 1 7.5506 2.7309 -2.0435 43 1 6.2985 3.9392 -1.6696 44 1 6.1380 1.6908 -0.3480 45 1 6.8966 1.6756 1.2741 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106682842.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:48:44 Heat of formation + Delta-G solvation = -34.622962 kcal Electronic energy + Delta-G solvation = -22118.094623 eV Core-core repulsion = 18942.070622 eV Total energy + Delta-G solvation = -3176.024001 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.38711 -39.62338 -37.81036 -36.44664 -34.09823 -33.01358 -32.88172 -30.73790 -27.67783 -27.39127 -25.54683 -24.73447 -24.03998 -22.54485 -21.42051 -20.97962 -20.06252 -19.08316 -18.21057 -17.15294 -16.84733 -16.49032 -15.84430 -15.75031 -15.33688 -15.23451 -15.08905 -14.72682 -14.43364 -14.18673 -13.77613 -13.62662 -13.39228 -13.24889 -13.06173 -12.98245 -12.83612 -12.67211 -12.46135 -12.18668 -12.14894 -11.98241 -11.92263 -11.76075 -11.58103 -11.42770 -11.26163 -11.01610 -10.95424 -10.78333 -9.78262 -9.01803 -7.95894 -5.25652 1.42598 1.45856 1.48348 1.56732 1.86846 2.55019 2.83840 3.34354 3.38548 3.57690 3.68860 3.75322 3.81632 3.86305 4.12973 4.21417 4.25455 4.28346 4.36485 4.48202 4.50737 4.55545 4.58056 4.66792 4.77669 4.78561 4.85075 4.89910 4.93941 4.96315 5.05767 5.09529 5.16198 5.23213 5.24134 5.28198 5.29964 5.31578 5.48511 5.50339 5.54439 6.25560 6.56255 7.09338 7.31317 8.07613 8.29338 9.27960 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.027457 B = 0.003271 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.522747 B = 8558.252026 C = 9213.537149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.087 4.087 3 C -0.126 4.126 4 H 0.085 0.915 5 C -0.131 4.131 6 C -0.186 4.186 7 H 0.154 0.846 8 C 0.548 3.452 9 O -0.601 6.601 10 N -0.617 5.617 11 C 0.118 3.882 12 C -0.093 4.093 13 H 0.063 0.937 14 C 0.163 3.837 15 N -0.749 5.749 16 C -0.243 4.243 17 H 0.081 0.919 18 C -0.081 4.081 19 N -0.973 5.973 20 Si 0.976 3.024 21 H -0.285 1.285 22 H -0.298 1.298 23 H -0.266 1.266 24 C -0.093 4.093 25 H 0.108 0.892 26 C -0.136 4.136 27 C 0.105 3.895 28 H 0.069 0.931 29 H 0.042 0.958 30 H 0.057 0.943 31 H 0.088 0.912 32 H 0.068 0.932 33 H 0.081 0.919 34 H 0.141 0.859 35 H 0.065 0.935 36 H 0.041 0.959 37 H 0.032 0.968 38 H 0.029 0.971 39 H 0.370 0.630 40 H 0.250 0.750 41 H 0.052 0.948 42 H 0.087 0.913 43 H 0.041 0.959 44 H 0.114 0.886 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.351 -22.965 -13.994 27.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.124 4.124 3 C -0.145 4.145 4 H 0.103 0.897 5 C -0.168 4.168 6 C -0.206 4.206 7 H 0.171 0.829 8 C 0.339 3.661 9 O -0.482 6.482 10 N -0.349 5.349 11 C -0.005 4.005 12 C -0.112 4.112 13 H 0.082 0.918 14 C 0.037 3.963 15 N -0.392 5.392 16 C -0.375 4.375 17 H 0.099 0.901 18 C -0.272 4.272 19 N -0.624 5.624 20 Si 0.805 3.195 21 H -0.212 1.212 22 H -0.225 1.225 23 H -0.191 1.191 24 C -0.112 4.112 25 H 0.126 0.874 26 C -0.193 4.193 27 C -0.016 4.016 28 H 0.088 0.912 29 H 0.061 0.939 30 H 0.076 0.924 31 H 0.107 0.893 32 H 0.087 0.913 33 H 0.099 0.901 34 H 0.159 0.841 35 H 0.083 0.917 36 H 0.059 0.941 37 H 0.050 0.950 38 H 0.047 0.953 39 H 0.202 0.798 40 H 0.059 0.941 41 H 0.071 0.929 42 H 0.105 0.895 43 H 0.060 0.940 44 H 0.132 0.868 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.699 -22.622 -13.656 27.260 hybrid contribution 0.153 1.692 1.188 2.073 sum -6.546 -20.930 -12.468 25.226 Atomic orbital electron populations 1.21756 0.95158 1.02316 1.01637 1.21148 0.96276 0.91748 1.03241 1.22529 0.90652 0.99702 1.01592 0.89708 1.23217 1.00106 1.03172 0.90282 1.22280 0.98229 0.97541 1.02565 0.82858 1.20189 0.80061 0.86312 0.79513 1.90684 1.54423 1.51375 1.51743 1.49062 1.05144 1.27469 1.53210 1.22166 0.93659 0.89189 0.95523 1.22222 0.93953 0.98629 0.96432 0.91834 1.20910 0.95022 0.87101 0.93272 1.42664 1.18256 1.23846 1.54408 1.19678 0.96894 1.02856 1.18054 0.90131 1.25643 0.99359 0.99020 1.03223 1.69841 1.24948 1.19023 1.48625 0.85098 0.78074 0.78280 0.78064 1.21244 1.22519 1.19078 1.22145 1.00557 0.92766 0.95770 0.87388 1.21795 1.01062 1.02737 0.93707 1.22791 0.84971 0.93658 1.00198 0.91170 0.93860 0.92415 0.89331 0.91296 0.90082 0.84145 0.91721 0.94053 0.94983 0.95334 0.79839 0.94112 0.92907 0.89462 0.93999 0.86798 0.89316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.87 71.98 0.71 -1.18 16 2 C -0.09 -1.09 6.22 30.59 0.19 -0.90 16 3 C -0.13 -2.38 5.25 -10.77 -0.06 -2.43 16 4 H 0.08 2.18 7.60 -2.39 -0.02 2.16 16 5 C -0.13 -2.06 9.88 30.62 0.30 -1.76 16 6 C -0.19 -3.62 5.02 -11.54 -0.06 -3.68 16 7 H 0.15 1.97 7.65 -2.39 -0.02 1.95 16 8 C 0.55 16.96 7.70 87.66 0.67 17.64 16 9 O -0.60 -25.15 16.52 -3.02 -0.05 -25.20 16 10 N -0.62 -17.61 3.32 -807.88 -2.68 -20.29 16 11 C 0.12 4.21 6.41 86.53 0.55 4.77 16 12 C -0.09 -2.97 2.75 -9.89 -0.03 -2.99 16 13 H 0.06 2.28 7.71 -2.39 -0.02 2.26 16 14 C 0.16 6.32 5.38 86.38 0.46 6.79 16 15 N -0.75 -38.94 5.48 -343.44 -1.88 -40.82 16 16 C -0.24 -13.77 9.99 84.03 0.84 -12.93 16 17 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 18 C -0.08 -4.75 5.50 84.86 0.47 -4.29 16 19 N -0.97 -61.98 13.06 21.65 0.28 -61.69 16 20 Si 0.98 47.06 29.55 68.60 2.03 49.09 16 21 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 22 H -0.30 -14.60 7.11 99.48 0.71 -13.90 16 23 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 24 C -0.09 -1.94 3.31 -9.87 -0.03 -1.97 16 25 H 0.11 1.93 7.71 -2.39 -0.02 1.91 16 26 C -0.14 -2.44 8.91 71.98 0.64 -1.80 16 27 C 0.11 1.93 6.37 86.55 0.55 2.48 16 28 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.09 0.72 7.88 -2.39 -0.02 0.70 16 32 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 33 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.14 1.21 8.03 -2.38 -0.02 1.19 16 35 H 0.06 2.43 7.75 -2.39 -0.02 2.41 16 36 H 0.04 1.79 7.88 -2.39 -0.02 1.77 16 37 H 0.03 1.20 8.14 -2.38 -0.02 1.18 16 38 H 0.03 1.08 7.98 -2.39 -0.02 1.06 16 39 H 0.37 21.03 7.61 -92.71 -0.71 20.33 16 40 H 0.25 15.45 8.31 -92.71 -0.77 14.68 16 41 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.04 0.86 8.14 -2.38 -0.02 0.84 16 44 H 0.11 1.34 6.93 -2.39 -0.02 1.32 16 45 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 Total: -1.00 -76.40 364.08 3.17 -73.24 By element: Atomic # 1 Polarization: 27.69 SS G_CDS: 0.24 Total: 27.93 kcal Atomic # 6 Polarization: -7.48 SS G_CDS: 5.22 Total: -2.26 kcal Atomic # 7 Polarization: -118.52 SS G_CDS: -4.28 Total: -122.80 kcal Atomic # 8 Polarization: -25.15 SS G_CDS: -0.05 Total: -25.20 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 2.03 Total: 49.09 kcal Total: -76.40 3.17 -73.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106682842.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.614 kcal (2) G-P(sol) polarization free energy of solvation -76.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds