Wall clock time and date at job start Tue Mar 31 2020 02:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53007 * 109.47358 * 2 1 4 4 C 1.50703 * 109.47398 * 120.00241 * 2 1 3 5 5 O 1.21283 * 119.99488 * 359.97438 * 4 2 1 6 6 N 1.34777 * 120.00290 * 180.02562 * 4 2 1 7 7 C 1.46498 * 119.99828 * 180.27728 * 6 4 2 8 8 C 1.52996 * 109.47059 * 179.72339 * 7 6 4 9 9 C 1.53364 * 111.22629 * 297.62890 * 8 7 6 10 10 C 1.55544 * 105.83594 * 241.97103 * 9 8 7 11 11 C 1.54684 * 104.34930 * 334.35722 * 10 9 8 12 12 C 1.54576 * 111.31967 * 177.45301 * 8 7 6 13 13 H 1.08994 * 111.92119 * 18.71038 * 12 8 7 14 14 N 1.46898 * 107.36628 * 255.61620 * 12 8 7 15 15 C 1.36939 * 125.24944 * 181.63106 * 14 12 8 16 16 H 1.08001 * 119.99552 * 0.02562 * 15 14 12 17 17 C 1.38807 * 119.99850 * 180.02562 * 15 14 12 18 18 N 1.31622 * 119.99889 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00039 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.46941 * 90.00007 * 19 17 15 21 21 H 1.48495 * 109.46988 * 210.00194 * 19 17 15 22 22 H 1.48504 * 109.47048 * 329.99924 * 19 17 15 23 23 C 1.46738 * 109.49893 * 1.66038 * 14 12 8 24 24 C 1.53862 * 111.26295 * 61.00921 * 8 7 6 25 25 H 1.09011 * 109.47182 * 299.99947 * 1 2 3 26 26 H 1.09007 * 109.47253 * 59.99564 * 1 2 3 27 27 H 1.08998 * 109.47508 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47337 * 240.00327 * 2 1 3 29 29 H 1.09003 * 109.46582 * 60.00448 * 3 2 1 30 30 H 1.09001 * 109.46852 * 180.02562 * 3 2 1 31 31 H 1.08993 * 109.46731 * 300.00313 * 3 2 1 32 32 H 0.97001 * 119.99727 * 359.97438 * 6 4 2 33 33 H 1.09004 * 109.46963 * 299.72135 * 7 6 4 34 34 H 1.08994 * 109.47567 * 59.72287 * 7 6 4 35 35 H 1.08997 * 110.05777 * 1.97384 * 9 8 7 36 36 H 1.08998 * 110.05584 * 123.47884 * 9 8 7 37 37 H 1.08994 * 110.54335 * 215.54569 * 10 9 8 38 38 H 1.08997 * 110.34786 * 93.06916 * 10 9 8 39 39 H 1.08998 * 110.61444 * 278.64685 * 11 10 9 40 40 H 1.09001 * 110.61527 * 155.66324 * 11 10 9 41 41 H 0.97003 * 120.00135 * 180.02562 * 18 17 15 42 42 H 1.09003 * 110.03813 * 221.96969 * 23 14 12 43 43 H 1.08997 * 110.04465 * 100.50584 * 23 14 12 44 44 H 1.08998 * 110.57831 * 212.51823 * 24 8 7 45 45 H 1.09008 * 110.57064 * 335.24713 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 1.2441 -1.1710 2.0290 6 7 3.3574 -0.8332 1.4440 7 6 3.8457 -1.5291 2.6370 8 6 5.3756 -1.5334 2.6345 9 6 5.9268 -2.2964 1.4237 10 6 6.7335 -3.4917 2.0064 11 6 7.1611 -3.0155 3.4146 12 6 5.9378 -2.2031 3.9092 13 1 5.1926 -2.8258 4.4042 14 7 6.4261 -1.1322 4.7882 15 6 7.0273 -1.3203 6.0041 16 1 7.1741 -2.3202 6.3850 17 6 7.4478 -0.2257 6.7471 18 7 7.2683 0.9928 6.2830 19 14 8.2685 -0.4822 8.4054 20 1 9.7364 -0.6048 8.2175 21 1 7.9773 0.6772 9.2864 22 1 7.7441 -1.7229 9.0306 23 6 6.1696 0.1701 4.1626 24 6 5.9377 -0.1014 2.6637 25 1 -0.3634 0.5139 0.8901 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.6767 1.9563 0.8901 30 1 3.1300 1.4424 -0.0005 31 1 1.6766 1.9563 -0.8899 32 1 3.9877 -0.4645 0.8055 33 1 3.4852 -1.0172 3.5293 34 1 3.4795 -2.5557 2.6343 35 1 5.1063 -2.6471 0.7977 36 1 6.5895 -1.6521 0.8459 37 1 7.6091 -3.6985 1.3912 38 1 6.1011 -4.3766 2.0784 39 1 8.0444 -2.3798 3.3530 40 1 7.3454 -3.8679 4.0685 41 1 7.5625 1.7577 6.8020 42 1 7.0316 0.8241 4.2947 43 1 5.2826 0.6270 4.6012 44 1 6.8778 -0.0476 2.1147 45 1 5.2142 0.6025 2.2522 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107283787.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:35:39 Heat of formation + Delta-G solvation = -33.195856 kcal Electronic energy + Delta-G solvation = -23297.858014 eV Core-core repulsion = 20121.895897 eV Total energy + Delta-G solvation = -3175.962117 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.13745 -39.01076 -34.74742 -34.50032 -33.91616 -31.67974 -30.29929 -27.94510 -27.14963 -26.68411 -24.80903 -23.84031 -22.79681 -20.29653 -20.05376 -19.62596 -18.20336 -17.23190 -16.76929 -15.61063 -15.49134 -14.92809 -14.84494 -14.42072 -13.92005 -13.73293 -13.50413 -13.13397 -13.02709 -12.67428 -12.47141 -12.38906 -12.05273 -11.82623 -11.48423 -11.31286 -11.25734 -11.17871 -11.11424 -10.81100 -10.71688 -10.65439 -10.25238 -10.11680 -10.03617 -9.83667 -9.58453 -9.57244 -9.42762 -8.81472 -8.58136 -6.80040 -5.64447 -3.03218 2.77460 3.33599 3.41220 3.46778 3.48424 4.50809 4.62411 4.76277 4.84450 4.93748 5.00252 5.04326 5.27188 5.45515 5.52452 5.55927 5.57658 5.59107 5.70118 5.77156 5.78609 5.84732 5.89395 6.01240 6.04483 6.09443 6.10973 6.13592 6.21233 6.31418 6.40799 6.45314 6.49445 6.66448 6.70874 6.78495 6.87549 7.13198 7.57042 7.65973 7.69715 7.88184 8.36949 8.37356 9.26265 9.87368 10.50768 11.41251 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.021495 B = 0.004658 C = 0.004203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.331102 B = 6009.680487 C = 6661.015220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.115 4.115 3 C -0.145 4.145 4 C 0.511 3.489 5 O -0.544 6.544 6 N -0.722 5.722 7 C 0.140 3.860 8 C -0.082 4.082 9 C -0.111 4.111 10 C -0.122 4.122 11 C -0.130 4.130 12 C 0.173 3.827 13 H 0.047 0.953 14 N -0.596 5.596 15 C -0.220 4.220 16 H 0.077 0.923 17 C -0.010 4.010 18 N -0.923 5.923 19 Si 0.911 3.089 20 H -0.290 1.290 21 H -0.291 1.291 22 H -0.282 1.282 23 C 0.163 3.837 24 C -0.133 4.133 25 H 0.062 0.938 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.094 0.906 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.399 0.601 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.063 0.937 37 H 0.056 0.944 38 H 0.057 0.943 39 H 0.072 0.928 40 H 0.054 0.946 41 H 0.251 0.749 42 H 0.092 0.908 43 H 0.012 0.988 44 H 0.060 0.940 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.386 -2.222 -15.729 17.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.137 4.137 3 C -0.203 4.203 4 C 0.297 3.703 5 O -0.421 6.421 6 N -0.374 5.374 7 C 0.017 3.983 8 C -0.083 4.083 9 C -0.148 4.148 10 C -0.161 4.161 11 C -0.170 4.170 12 C 0.064 3.936 13 H 0.064 0.936 14 N -0.320 5.320 15 C -0.348 4.348 16 H 0.095 0.905 17 C -0.206 4.206 18 N -0.571 5.571 19 Si 0.742 3.258 20 H -0.217 1.217 21 H -0.217 1.217 22 H -0.208 1.208 23 C 0.038 3.962 24 C -0.171 4.171 25 H 0.081 0.919 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.112 0.888 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.233 0.767 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.090 0.910 40 H 0.072 0.928 41 H 0.061 0.939 42 H 0.110 0.890 43 H 0.030 0.970 44 H 0.079 0.921 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.872 -2.403 -14.936 16.616 hybrid contribution 0.779 0.077 0.620 0.999 sum -6.093 -2.326 -14.316 15.732 Atomic orbital electron populations 1.21598 0.92691 1.02683 1.01958 1.21304 0.98271 0.97352 0.96740 1.21797 1.01375 0.94197 1.02886 1.20659 0.82315 0.79691 0.87614 1.90696 1.55390 1.48859 1.47169 1.46093 1.06834 1.58458 1.25975 1.21329 0.92998 0.96613 0.87370 1.21872 0.92698 0.97425 0.96282 1.22375 0.98835 0.97222 0.96404 1.22522 0.98816 0.97231 0.97483 1.22992 1.00282 0.99577 0.94149 1.21525 0.93020 0.90464 0.88547 0.93574 1.44335 1.68732 1.00278 1.18625 1.19041 1.30139 0.92862 0.92784 0.90545 1.24766 1.01644 0.95270 0.98890 1.69887 1.52412 0.97055 1.37749 0.86120 0.79187 0.76937 0.83561 1.21690 1.21747 1.20763 1.21429 1.00731 0.88714 0.85293 1.22792 0.99131 0.93804 1.01401 0.91904 0.92275 0.92082 0.88800 0.91884 0.92017 0.91568 0.76683 0.91052 0.91858 0.92269 0.91829 0.92547 0.92428 0.90975 0.92754 0.93866 0.88971 0.97008 0.92143 0.92562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.30 8.48 37.15 0.32 -0.98 16 2 C -0.12 -1.14 3.26 -91.77 -0.30 -1.44 16 3 C -0.14 -1.24 9.09 37.16 0.34 -0.90 16 4 C 0.51 7.17 7.15 -10.98 -0.08 7.09 16 5 O -0.54 -9.96 15.98 5.55 0.09 -9.87 16 6 N -0.72 -9.53 4.54 -60.30 -0.27 -9.80 16 7 C 0.14 2.26 4.43 -4.04 -0.02 2.24 16 8 C -0.08 -1.33 0.53 -153.04 -0.08 -1.42 16 9 C -0.11 -1.49 5.75 -25.19 -0.14 -1.63 16 10 C -0.12 -1.72 6.88 -24.49 -0.17 -1.89 16 11 C -0.13 -2.33 6.23 -24.81 -0.15 -2.49 16 12 C 0.17 3.45 3.60 -65.86 -0.24 3.22 16 13 H 0.05 0.96 7.92 -51.93 -0.41 0.55 16 14 N -0.60 -14.72 2.99 -162.42 -0.49 -15.21 16 15 C -0.22 -6.01 9.96 -15.06 -0.15 -6.16 16 16 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 17 C -0.01 -0.29 5.48 -17.43 -0.10 -0.38 16 18 N -0.92 -26.79 10.14 55.49 0.56 -26.23 16 19 Si 0.91 22.12 29.55 -169.99 -5.02 17.10 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 21 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 C 0.16 3.88 5.65 -3.35 -0.02 3.86 16 24 C -0.13 -2.36 5.77 -25.72 -0.15 -2.50 16 25 H 0.06 0.70 8.10 -51.92 -0.42 0.28 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 28 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.49 7.56 -51.93 -0.39 0.10 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.40 4.31 6.97 -40.82 -0.28 4.03 16 33 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.06 0.71 7.51 -51.93 -0.39 0.32 16 36 H 0.06 0.81 7.28 -51.93 -0.38 0.43 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.07 1.44 8.06 -51.93 -0.42 1.02 16 40 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 42 H 0.09 2.48 6.17 -51.93 -0.32 2.16 16 43 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.06 1.04 7.42 -51.93 -0.39 0.65 16 45 H 0.06 0.89 7.03 -51.92 -0.36 0.53 16 LS Contribution 346.45 15.07 5.22 5.22 Total: -1.00 -31.17 346.45 -8.81 -39.98 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -7.96 Total: 2.20 kcal Atomic # 6 Polarization: -2.46 SS G_CDS: -0.94 Total: -3.40 kcal Atomic # 7 Polarization: -51.04 SS G_CDS: -0.20 Total: -51.24 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.09 Total: -9.87 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.17 -8.81 -39.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107283787.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.786 kcal (2) G-P(sol) polarization free energy of solvation -31.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds