Wall clock time and date at job start Tue Mar 31 2020 02:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53007 * 109.47358 * 2 1 4 4 C 1.50703 * 109.47398 * 120.00241 * 2 1 3 5 5 O 1.21283 * 119.99488 * 359.97438 * 4 2 1 6 6 N 1.34777 * 120.00290 * 180.02562 * 4 2 1 7 7 C 1.46498 * 119.99828 * 180.27728 * 6 4 2 8 8 C 1.52996 * 109.47059 * 179.72339 * 7 6 4 9 9 C 1.53364 * 111.22629 * 297.62890 * 8 7 6 10 10 C 1.55544 * 105.83594 * 241.97103 * 9 8 7 11 11 C 1.54684 * 104.34930 * 334.35722 * 10 9 8 12 12 C 1.54576 * 111.31967 * 177.45301 * 8 7 6 13 13 H 1.08994 * 111.92119 * 18.71038 * 12 8 7 14 14 N 1.46898 * 107.36628 * 255.61620 * 12 8 7 15 15 C 1.36939 * 125.24944 * 181.63106 * 14 12 8 16 16 H 1.08001 * 119.99552 * 0.02562 * 15 14 12 17 17 C 1.38807 * 119.99850 * 180.02562 * 15 14 12 18 18 N 1.31622 * 119.99889 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00039 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.46941 * 90.00007 * 19 17 15 21 21 H 1.48495 * 109.46988 * 210.00194 * 19 17 15 22 22 H 1.48504 * 109.47048 * 329.99924 * 19 17 15 23 23 C 1.46738 * 109.49893 * 1.66038 * 14 12 8 24 24 C 1.53862 * 111.26295 * 61.00921 * 8 7 6 25 25 H 1.09011 * 109.47182 * 299.99947 * 1 2 3 26 26 H 1.09007 * 109.47253 * 59.99564 * 1 2 3 27 27 H 1.08998 * 109.47508 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47337 * 240.00327 * 2 1 3 29 29 H 1.09003 * 109.46582 * 60.00448 * 3 2 1 30 30 H 1.09001 * 109.46852 * 180.02562 * 3 2 1 31 31 H 1.08993 * 109.46731 * 300.00313 * 3 2 1 32 32 H 0.97001 * 119.99727 * 359.97438 * 6 4 2 33 33 H 1.09004 * 109.46963 * 299.72135 * 7 6 4 34 34 H 1.08994 * 109.47567 * 59.72287 * 7 6 4 35 35 H 1.08997 * 110.05777 * 1.97384 * 9 8 7 36 36 H 1.08998 * 110.05584 * 123.47884 * 9 8 7 37 37 H 1.08994 * 110.54335 * 215.54569 * 10 9 8 38 38 H 1.08997 * 110.34786 * 93.06916 * 10 9 8 39 39 H 1.08998 * 110.61444 * 278.64685 * 11 10 9 40 40 H 1.09001 * 110.61527 * 155.66324 * 11 10 9 41 41 H 0.97003 * 120.00135 * 180.02562 * 18 17 15 42 42 H 1.09003 * 110.03813 * 221.96969 * 23 14 12 43 43 H 1.08997 * 110.04465 * 100.50584 * 23 14 12 44 44 H 1.08998 * 110.57831 * 212.51823 * 24 8 7 45 45 H 1.09008 * 110.57064 * 335.24713 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 1.2441 -1.1710 2.0290 6 7 3.3574 -0.8332 1.4440 7 6 3.8457 -1.5291 2.6370 8 6 5.3756 -1.5334 2.6345 9 6 5.9268 -2.2964 1.4237 10 6 6.7335 -3.4917 2.0064 11 6 7.1611 -3.0155 3.4146 12 6 5.9378 -2.2031 3.9092 13 1 5.1926 -2.8258 4.4042 14 7 6.4261 -1.1322 4.7882 15 6 7.0273 -1.3203 6.0041 16 1 7.1741 -2.3202 6.3850 17 6 7.4478 -0.2257 6.7471 18 7 7.2683 0.9928 6.2830 19 14 8.2685 -0.4822 8.4054 20 1 9.7364 -0.6048 8.2175 21 1 7.9773 0.6772 9.2864 22 1 7.7441 -1.7229 9.0306 23 6 6.1696 0.1701 4.1626 24 6 5.9377 -0.1014 2.6637 25 1 -0.3634 0.5139 0.8901 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.6767 1.9563 0.8901 30 1 3.1300 1.4424 -0.0005 31 1 1.6766 1.9563 -0.8899 32 1 3.9877 -0.4645 0.8055 33 1 3.4852 -1.0172 3.5293 34 1 3.4795 -2.5557 2.6343 35 1 5.1063 -2.6471 0.7977 36 1 6.5895 -1.6521 0.8459 37 1 7.6091 -3.6985 1.3912 38 1 6.1011 -4.3766 2.0784 39 1 8.0444 -2.3798 3.3530 40 1 7.3454 -3.8679 4.0685 41 1 7.5625 1.7577 6.8020 42 1 7.0316 0.8241 4.2947 43 1 5.2826 0.6270 4.6012 44 1 6.8778 -0.0476 2.1147 45 1 5.2142 0.6025 2.2522 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107283787.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:35:38 Heat of formation + Delta-G solvation = -52.483690 kcal Electronic energy + Delta-G solvation = -23298.694397 eV Core-core repulsion = 20121.895897 eV Total energy + Delta-G solvation = -3176.798500 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.43917 -40.33618 -36.34080 -35.47300 -35.26810 -33.43982 -31.98117 -29.36354 -28.34591 -27.90623 -26.10043 -25.69158 -23.87710 -21.93751 -21.41733 -20.83230 -19.60987 -18.86543 -18.12213 -16.87177 -16.81753 -16.56129 -16.23518 -15.88111 -15.29475 -14.89176 -14.86199 -14.57186 -14.34283 -14.10032 -13.62058 -13.45417 -13.21242 -13.13930 -12.91352 -12.85543 -12.81634 -12.62761 -12.42119 -12.03579 -12.02924 -11.95293 -11.87617 -11.62337 -11.52650 -11.41702 -11.33515 -11.04044 -10.71295 -10.67547 -10.05539 -8.83557 -7.77657 -5.17946 1.44439 1.46024 1.54393 1.67917 2.23280 2.50000 3.33156 3.49668 3.65643 3.72885 3.75773 3.96436 4.04487 4.10369 4.28509 4.37838 4.43873 4.52244 4.53253 4.59729 4.65966 4.77025 4.79351 4.86452 4.92789 4.93724 4.96848 5.04678 5.11255 5.15734 5.18706 5.29568 5.33904 5.35985 5.39690 5.43427 5.48846 5.54383 5.61453 5.71273 5.86747 6.31011 6.60577 7.14691 7.30254 7.84562 8.45731 9.26187 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.021495 B = 0.004658 C = 0.004203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.331102 B = 6009.680487 C = 6661.015220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.106 4.106 3 C -0.144 4.144 4 C 0.505 3.495 5 O -0.594 6.594 6 N -0.709 5.709 7 C 0.151 3.849 8 C -0.067 4.067 9 C -0.101 4.101 10 C -0.112 4.112 11 C -0.125 4.125 12 C 0.156 3.844 13 H 0.032 0.968 14 N -0.614 5.614 15 C -0.230 4.230 16 H 0.077 0.923 17 C -0.067 4.067 18 N -0.950 5.950 19 Si 0.974 3.026 20 H -0.284 1.284 21 H -0.297 1.297 22 H -0.273 1.273 23 C 0.168 3.832 24 C -0.116 4.116 25 H 0.039 0.961 26 H 0.089 0.911 27 H 0.049 0.951 28 H 0.129 0.871 29 H 0.041 0.959 30 H 0.071 0.929 31 H 0.092 0.908 32 H 0.415 0.585 33 H 0.028 0.972 34 H 0.064 0.936 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.049 0.951 40 H 0.048 0.952 41 H 0.244 0.756 42 H 0.058 0.942 43 H -0.030 1.030 44 H 0.076 0.924 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.076 -3.133 -19.041 20.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.127 4.127 3 C -0.201 4.201 4 C 0.294 3.706 5 O -0.475 6.475 6 N -0.362 5.362 7 C 0.027 3.973 8 C -0.068 4.068 9 C -0.138 4.138 10 C -0.150 4.150 11 C -0.164 4.164 12 C 0.049 3.951 13 H 0.050 0.950 14 N -0.338 5.338 15 C -0.359 4.359 16 H 0.095 0.905 17 C -0.260 4.260 18 N -0.600 5.600 19 Si 0.803 3.197 20 H -0.210 1.210 21 H -0.223 1.223 22 H -0.198 1.198 23 C 0.043 3.957 24 C -0.154 4.154 25 H 0.059 0.941 26 H 0.108 0.892 27 H 0.068 0.932 28 H 0.146 0.854 29 H 0.061 0.939 30 H 0.089 0.911 31 H 0.111 0.889 32 H 0.253 0.747 33 H 0.047 0.953 34 H 0.082 0.918 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.098 0.902 38 H 0.089 0.911 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.054 0.946 42 H 0.076 0.924 43 H -0.012 1.012 44 H 0.095 0.905 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.546 -3.336 -18.298 19.718 hybrid contribution 0.630 0.344 1.709 1.854 sum -5.917 -2.992 -16.588 17.864 Atomic orbital electron populations 1.21622 0.92900 1.02096 1.02356 1.21372 0.98030 0.97907 0.95406 1.21826 1.01995 0.93082 1.03220 1.21557 0.81863 0.78874 0.88354 1.90680 1.56592 1.50992 1.49208 1.45926 1.07200 1.57942 1.25083 1.20993 0.92814 0.96351 0.87164 1.21751 0.92521 0.96436 0.96130 1.22360 0.99819 0.96748 0.94902 1.22480 1.00029 0.97796 0.94692 1.22814 0.98080 0.98553 0.96978 1.21825 0.93947 0.89953 0.89386 0.94983 1.44603 1.68560 1.01942 1.18739 1.19377 1.29591 0.92896 0.94043 0.90493 1.25557 1.02942 0.95149 1.02324 1.70138 1.53645 0.97526 1.38721 0.85136 0.78311 0.76719 0.79553 1.21050 1.22322 1.19825 1.21184 0.97292 0.87985 0.89261 1.22635 1.00683 0.95289 0.96819 0.94135 0.89210 0.93208 0.85370 0.93929 0.91050 0.88909 0.74739 0.95347 0.91820 0.89656 0.89844 0.90193 0.91064 0.93185 0.93266 0.94613 0.92431 1.01196 0.90527 0.90408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.36 8.48 71.98 0.61 -1.75 16 2 C -0.11 -1.78 3.26 -11.54 -0.04 -1.82 16 3 C -0.14 -2.01 9.09 71.98 0.65 -1.36 16 4 C 0.51 13.48 7.15 87.66 0.63 14.11 16 5 O -0.59 -22.01 15.98 -3.04 -0.05 -22.06 16 6 N -0.71 -17.24 4.54 -463.07 -2.10 -19.34 16 7 C 0.15 4.80 4.43 86.38 0.38 5.19 16 8 C -0.07 -2.11 0.53 -51.23 -0.03 -2.13 16 9 C -0.10 -2.27 5.75 31.59 0.18 -2.09 16 10 C -0.11 -2.73 6.88 32.04 0.22 -2.51 16 11 C -0.12 -4.34 6.23 31.84 0.20 -4.14 16 12 C 0.16 6.28 3.60 46.12 0.17 6.45 16 13 H 0.03 1.38 7.92 -2.39 -0.02 1.36 16 14 N -0.61 -31.53 2.99 -667.76 -1.99 -33.52 16 15 C -0.23 -13.02 9.96 84.03 0.84 -12.18 16 16 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 17 C -0.07 -3.89 5.48 84.86 0.47 -3.43 16 18 N -0.95 -57.75 10.14 21.65 0.22 -57.53 16 19 Si 0.97 46.74 29.55 68.60 2.03 48.76 16 20 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 21 H -0.30 -14.38 7.11 99.48 0.71 -13.68 16 22 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 23 C 0.17 8.35 5.65 86.70 0.49 8.84 16 24 C -0.12 -4.01 5.77 31.25 0.18 -3.83 16 25 H 0.04 0.89 8.10 -2.38 -0.02 0.87 16 26 H 0.09 1.04 8.14 -2.38 -0.02 1.03 16 27 H 0.05 0.99 8.10 -2.39 -0.02 0.97 16 28 H 0.13 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.07 0.87 7.56 -2.39 -0.02 0.85 16 31 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.41 7.37 6.97 -92.71 -0.65 6.72 16 33 H 0.03 1.14 8.14 -2.38 -0.02 1.12 16 34 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.08 1.57 7.51 -2.39 -0.02 1.56 16 36 H 0.08 1.65 7.28 -2.39 -0.02 1.63 16 37 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.05 1.96 8.06 -2.39 -0.02 1.94 16 40 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.24 14.49 8.31 -92.71 -0.77 13.72 16 42 H 0.06 3.25 6.17 -2.39 -0.01 3.24 16 43 H -0.03 -1.69 8.14 -2.39 -0.02 -1.71 16 44 H 0.08 2.44 7.42 -2.39 -0.02 2.43 16 45 H 0.08 2.34 7.03 -2.38 -0.02 2.33 16 Total: -1.00 -73.68 346.45 3.36 -70.32 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: 0.31 Total: 14.03 kcal Atomic # 6 Polarization: -5.61 SS G_CDS: 4.95 Total: -0.66 kcal Atomic # 7 Polarization: -106.52 SS G_CDS: -3.88 Total: -110.40 kcal Atomic # 8 Polarization: -22.01 SS G_CDS: -0.05 Total: -22.06 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 2.03 Total: 48.76 kcal Total: -73.68 3.36 -70.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107283787.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.836 kcal (2) G-P(sol) polarization free energy of solvation -73.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds