Wall clock time and date at job start Tue Mar 31 2020 03:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47212 * 2 1 4 4 H 1.08996 * 109.46766 * 305.00073 * 3 2 1 5 5 C 1.53001 * 109.46892 * 65.00078 * 3 2 1 6 6 C 1.52998 * 109.47067 * 184.99871 * 3 2 1 7 7 C 1.50696 * 109.46859 * 174.99779 * 6 3 2 8 8 O 1.21277 * 120.00538 * 0.02562 * 7 6 3 9 9 N 1.34780 * 119.99975 * 180.02562 * 7 6 3 10 10 C 1.46496 * 120.00137 * 180.02562 * 9 7 6 11 11 H 1.09002 * 110.56276 * 36.96641 * 10 9 7 12 12 C 1.54851 * 110.62915 * 160.04629 * 10 9 7 13 13 C 1.55841 * 103.44756 * 118.48715 * 12 10 9 14 14 H 1.09000 * 116.13005 * 159.15292 * 13 12 10 15 15 C 1.55846 * 105.06318 * 288.17272 * 13 12 10 16 16 C 1.54855 * 103.44584 * 71.82762 * 15 13 12 17 17 C 1.55849 * 103.44329 * 359.97438 * 16 15 13 18 18 H 1.08998 * 116.12834 * 159.14834 * 17 16 15 19 19 N 1.50237 * 101.05272 * 32.93525 * 13 12 10 20 20 C 1.36940 * 130.83449 * 126.01106 * 19 13 12 21 21 H 1.08002 * 119.99494 * 180.02562 * 20 19 13 22 22 C 1.38814 * 120.00348 * 0.02609 * 20 19 13 23 23 N 1.31617 * 119.99870 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00076 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46788 * 60.00251 * 24 22 20 26 26 H 1.48500 * 109.47196 * 180.02562 * 24 22 20 27 27 H 1.48505 * 109.47285 * 300.00655 * 24 22 20 28 28 H 1.08998 * 109.47040 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46802 * 299.99731 * 1 2 3 30 30 H 1.08992 * 109.47150 * 59.99870 * 1 2 3 31 31 H 1.08995 * 109.47072 * 239.99909 * 2 1 3 32 32 H 1.09000 * 109.47385 * 120.00042 * 2 1 3 33 33 H 1.08995 * 109.47244 * 299.99721 * 5 3 2 34 34 H 1.09000 * 109.47195 * 59.99938 * 5 3 2 35 35 H 1.08998 * 109.46861 * 180.02562 * 5 3 2 36 36 H 1.08999 * 109.46830 * 55.00506 * 6 3 2 37 37 H 1.08998 * 109.47143 * 295.00089 * 6 3 2 38 38 H 0.97000 * 120.00135 * 359.97438 * 9 7 6 39 39 H 1.08997 * 110.62538 * 236.97583 * 12 10 9 40 40 H 1.09003 * 110.62516 * 359.97438 * 12 10 9 41 41 H 1.08999 * 110.62714 * 190.31277 * 15 13 12 42 42 H 1.08993 * 110.62692 * 313.18017 * 15 13 12 43 43 H 1.08993 * 110.62278 * 241.51417 * 16 15 13 44 44 H 1.08998 * 110.62683 * 118.48853 * 16 15 13 45 45 H 0.96998 * 119.99914 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1265 1.3074 6 6 3.5649 1.4443 -0.1257 7 6 4.0570 2.8633 -0.2493 8 8 3.2661 3.7827 -0.2375 9 7 5.3761 3.1107 -0.3729 10 6 5.8546 4.4902 -0.4925 11 1 5.2624 5.1565 0.1349 12 6 7.3561 4.5806 -0.1250 13 6 8.0208 5.0902 -1.4393 14 1 8.9986 5.5596 -1.3319 15 6 7.9598 3.8803 -2.4196 16 6 6.4583 3.7899 -2.7871 17 6 5.8163 4.9571 -1.9783 18 1 4.8497 5.3133 -2.3345 19 7 6.9314 5.9644 -1.9927 20 6 6.9493 7.2754 -2.3877 21 1 6.0492 7.7379 -2.7653 22 6 8.1240 8.0100 -2.3029 23 7 9.2209 7.4463 -1.8432 24 14 8.1485 9.7982 -2.8425 25 1 7.1802 10.5745 -2.0269 26 1 9.5127 10.3537 -2.6537 27 1 7.7719 9.8879 -4.2762 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 1.8933 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 0.5490 2.1253 1.3969 34 1 2.0699 1.5874 2.1492 35 1 1.9982 3.1543 1.3072 36 1 3.8570 0.8801 -1.0113 37 1 4.0029 0.9835 0.7597 38 1 6.0087 2.3755 -0.3820 39 1 7.5110 5.2933 0.6850 40 1 7.7447 3.5990 0.1466 41 1 8.5614 4.0748 -3.3075 42 1 8.2920 2.9678 -1.9245 43 1 6.0432 2.8321 -2.4734 44 1 6.3152 3.9395 -3.8573 45 1 10.0419 7.9595 -1.7843 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001109206795.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:04:13 Heat of formation + Delta-G solvation = -29.117567 kcal Electronic energy + Delta-G solvation = -22951.193502 eV Core-core repulsion = 19775.408233 eV Total energy + Delta-G solvation = -3175.785269 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.48439 -39.99875 -37.18819 -35.38186 -34.19140 -31.70899 -31.00570 -30.68146 -29.45393 -28.10244 -26.13576 -24.83712 -22.84776 -21.93087 -21.16899 -20.62193 -20.10277 -18.92400 -17.88998 -16.86990 -16.81287 -16.56310 -16.15605 -15.81153 -15.48906 -15.09299 -14.86134 -14.21943 -13.96957 -13.87641 -13.48649 -13.35002 -13.20643 -12.90297 -12.79687 -12.74363 -12.67537 -12.60529 -12.34730 -12.12581 -12.02049 -11.90644 -11.69363 -11.55656 -11.47363 -11.34259 -11.14541 -11.04189 -10.77605 -10.55543 -9.89146 -8.85850 -7.80563 -5.19817 1.44837 1.47330 1.53448 1.81728 2.31276 2.51557 3.32615 3.52187 3.83425 3.91485 3.98925 4.05911 4.12800 4.15556 4.34808 4.43788 4.48275 4.51584 4.62338 4.67861 4.71342 4.76163 4.79277 4.82431 4.89340 4.97401 4.98882 5.07973 5.15313 5.17972 5.20678 5.26728 5.29726 5.33746 5.39056 5.46662 5.54788 5.59736 5.64536 5.79986 5.89958 6.27495 6.76743 7.04967 7.47727 7.68345 8.54751 9.26123 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.032912 B = 0.003769 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.553787 B = 7427.003413 C = 7763.282075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.113 4.113 3 C -0.076 4.076 4 H 0.052 0.948 5 C -0.152 4.152 6 C -0.128 4.128 7 C 0.502 3.498 8 O -0.586 6.586 9 N -0.702 5.702 10 C 0.148 3.852 11 H 0.046 0.954 12 C -0.125 4.125 13 C 0.137 3.863 14 H 0.120 0.880 15 C -0.125 4.125 16 C -0.115 4.115 17 C 0.118 3.882 18 H 0.061 0.939 19 N -0.620 5.620 20 C -0.228 4.228 21 H 0.069 0.931 22 C -0.063 4.063 23 N -0.944 5.944 24 Si 0.976 3.024 25 H -0.284 1.284 26 H -0.289 1.289 27 H -0.282 1.282 28 H 0.064 0.936 29 H 0.052 0.948 30 H 0.045 0.955 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.055 0.945 34 H 0.061 0.939 35 H 0.040 0.960 36 H 0.118 0.882 37 H 0.118 0.882 38 H 0.414 0.586 39 H 0.043 0.957 40 H 0.098 0.902 41 H 0.033 0.967 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.039 0.961 45 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.156 -19.340 4.829 21.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.150 4.150 3 C -0.095 4.095 4 H 0.071 0.929 5 C -0.209 4.209 6 C -0.167 4.167 7 C 0.291 3.709 8 O -0.466 6.466 9 N -0.355 5.355 10 C 0.040 3.960 11 H 0.064 0.936 12 C -0.164 4.164 13 C 0.031 3.969 14 H 0.137 0.863 15 C -0.164 4.164 16 C -0.154 4.154 17 C 0.010 3.990 18 H 0.079 0.921 19 N -0.342 5.342 20 C -0.357 4.357 21 H 0.087 0.913 22 C -0.255 4.255 23 N -0.593 5.593 24 Si 0.805 3.195 25 H -0.210 1.210 26 H -0.215 1.215 27 H -0.208 1.208 28 H 0.083 0.917 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.059 0.941 36 H 0.136 0.864 37 H 0.136 0.864 38 H 0.252 0.748 39 H 0.062 0.938 40 H 0.116 0.884 41 H 0.052 0.948 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.058 0.942 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -9.570 -18.401 4.787 21.286 hybrid contribution 0.291 1.474 -0.411 1.557 sum -9.279 -16.927 4.377 19.794 Atomic orbital electron populations 1.21831 0.96009 1.01937 1.01555 1.21547 0.95947 0.94479 1.03037 1.20894 0.93414 0.96964 0.98255 0.92933 1.21944 1.01222 1.00596 0.97116 1.21818 0.97097 0.91379 1.06431 1.21516 0.81849 0.92865 0.74697 1.90665 1.55747 1.48578 1.51632 1.46055 1.07803 1.08095 1.73533 1.21976 0.94781 0.82698 0.96533 0.93572 1.23104 0.93454 1.01110 0.98774 1.23697 0.94834 0.88165 0.90225 0.86263 1.22943 0.95431 0.98812 0.99222 1.22795 0.96053 0.98220 0.98310 1.23317 0.91030 0.89702 0.94956 0.92095 1.46758 1.07025 1.07025 1.73428 1.19263 0.95700 0.86262 1.34454 0.91339 1.25409 0.95351 1.01993 1.02780 1.69657 1.00336 1.36192 1.53120 0.85187 0.76381 0.80013 0.77956 1.21018 1.21466 1.20809 0.91697 0.92854 0.93553 0.90848 0.90647 0.92611 0.92041 0.94054 0.86399 0.86401 0.74808 0.93836 0.88355 0.94769 0.89228 0.89163 0.94224 0.94080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.11 9.67 71.98 0.70 -1.42 16 2 C -0.11 -1.46 5.40 30.60 0.17 -1.30 16 3 C -0.08 -1.44 2.04 -10.79 -0.02 -1.46 16 4 H 0.05 1.26 7.96 -2.39 -0.02 1.24 16 5 C -0.15 -3.26 8.69 71.98 0.63 -2.63 16 6 C -0.13 -2.12 5.17 29.85 0.15 -1.97 16 7 C 0.50 13.70 7.54 87.66 0.66 14.36 16 8 O -0.59 -22.06 13.69 -3.02 -0.04 -22.10 16 9 N -0.70 -18.35 3.63 -435.01 -1.58 -19.93 16 10 C 0.15 5.46 3.08 46.59 0.14 5.60 16 11 H 0.05 2.03 7.70 -2.39 -0.02 2.01 16 12 C -0.12 -4.59 6.20 32.21 0.20 -4.39 16 13 C 0.14 6.17 4.72 46.23 0.22 6.38 16 14 H 0.12 6.31 5.52 -2.39 -0.01 6.29 16 15 C -0.12 -4.55 6.44 32.21 0.21 -4.34 16 16 C -0.11 -4.02 6.33 32.21 0.20 -3.81 16 17 C 0.12 5.05 5.35 46.20 0.25 5.29 16 18 H 0.06 2.84 8.14 -2.39 -0.02 2.82 16 19 N -0.62 -32.07 2.99 -615.26 -1.84 -33.91 16 20 C -0.23 -13.18 10.59 84.03 0.89 -12.29 16 21 H 0.07 3.94 7.83 -2.91 -0.02 3.91 16 22 C -0.06 -3.58 5.50 84.86 0.47 -3.11 16 23 N -0.94 -55.32 10.47 21.65 0.23 -55.09 16 24 Si 0.98 46.76 29.55 68.60 2.03 48.79 16 25 H -0.28 -13.38 7.11 99.48 0.71 -12.68 16 26 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 27 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 28 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.05 0.76 6.57 -2.38 -0.02 0.74 16 30 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.05 1.12 6.56 -2.39 -0.02 1.10 16 34 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.04 1.19 5.95 -2.39 -0.01 1.18 16 36 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.41 7.59 8.02 -92.71 -0.74 6.84 16 39 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.10 2.71 7.34 -2.39 -0.02 2.69 16 41 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.09 2.47 7.82 -2.39 -0.02 2.45 16 43 H 0.09 2.45 6.48 -2.39 -0.02 2.43 16 44 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 45 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 Total: -1.00 -70.89 343.97 3.87 -67.02 By element: Atomic # 1 Polarization: 20.08 SS G_CDS: 0.22 Total: 20.31 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: 4.86 Total: -5.09 kcal Atomic # 7 Polarization: -105.74 SS G_CDS: -3.19 Total: -108.93 kcal Atomic # 8 Polarization: -22.06 SS G_CDS: -0.04 Total: -22.10 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.79 kcal Total: -70.89 3.87 -67.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109206795.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.898 kcal (2) G-P(sol) polarization free energy of solvation -70.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds