Wall clock time and date at job start Tue Mar 31 2020 03:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47214 * 2 1 4 4 H 1.09000 * 109.47166 * 54.99227 * 3 2 1 5 5 C 1.53009 * 109.46905 * 294.99535 * 3 2 1 6 6 C 1.53001 * 109.47116 * 174.99719 * 3 2 1 7 7 C 1.50702 * 109.46731 * 184.99581 * 6 3 2 8 8 O 1.21281 * 120.00320 * 0.02562 * 7 6 3 9 9 N 1.34781 * 119.99471 * 180.02562 * 7 6 3 10 10 C 1.46501 * 119.99692 * 179.97438 * 9 7 6 11 11 H 1.09004 * 110.56171 * 36.97407 * 10 9 7 12 12 C 1.54858 * 110.62737 * 160.04229 * 10 9 7 13 13 C 1.55841 * 103.44450 * 118.49193 * 12 10 9 14 14 H 1.08997 * 116.12806 * 159.15314 * 13 12 10 15 15 C 1.55853 * 105.06300 * 288.17909 * 13 12 10 16 16 C 1.54845 * 103.44721 * 71.82556 * 15 13 12 17 17 C 1.55845 * 110.62893 * 274.07047 * 10 9 7 18 18 H 1.09001 * 115.55985 * 82.69938 * 17 10 9 19 19 N 1.50239 * 101.04975 * 208.57190 * 17 10 9 20 20 C 1.36940 * 130.83857 * 233.98593 * 19 17 10 21 21 H 1.07992 * 119.99634 * 0.02562 * 20 19 17 22 22 C 1.38816 * 119.99914 * 180.02562 * 20 19 17 23 23 N 1.31617 * 119.99759 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99858 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47092 * 89.99994 * 24 22 20 26 26 H 1.48502 * 109.46873 * 210.00029 * 24 22 20 27 27 H 1.48499 * 109.47038 * 330.00041 * 24 22 20 28 28 H 1.08997 * 109.47517 * 300.00235 * 1 2 3 29 29 H 1.09001 * 109.46887 * 60.00501 * 1 2 3 30 30 H 1.09005 * 109.47441 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47320 * 239.99426 * 2 1 3 32 32 H 1.09001 * 109.46887 * 119.99499 * 2 1 3 33 33 H 1.08993 * 109.46665 * 300.00084 * 5 3 2 34 34 H 1.08997 * 109.46881 * 60.00046 * 5 3 2 35 35 H 1.08992 * 109.46742 * 180.02562 * 5 3 2 36 36 H 1.08996 * 109.47094 * 304.99643 * 6 3 2 37 37 H 1.09001 * 109.47088 * 65.00108 * 6 3 2 38 38 H 0.96996 * 120.00175 * 359.97438 * 9 7 6 39 39 H 1.08995 * 110.62846 * 236.98343 * 12 10 9 40 40 H 1.09006 * 110.62346 * 0.02562 * 12 10 9 41 41 H 1.09002 * 110.62308 * 190.31764 * 15 13 12 42 42 H 1.08995 * 110.62418 * 313.17142 * 15 13 12 43 43 H 1.08997 * 110.62661 * 241.51079 * 16 15 13 44 44 H 1.08997 * 110.62719 * 118.48710 * 16 15 13 45 45 H 0.97004 * 119.99654 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8417 5 6 1.6353 2.1265 -1.3075 6 6 3.5648 1.4443 0.1258 7 6 4.0569 2.8633 0.2492 8 8 3.2659 3.7826 0.2381 9 7 5.3761 3.1108 0.3719 10 6 5.8546 4.4903 0.4913 11 1 5.1617 5.0857 1.0859 12 6 7.2751 4.5236 1.1070 13 6 8.1405 5.1747 -0.0136 14 1 9.0832 5.6194 0.3052 15 6 8.2519 4.0860 -1.1233 16 6 6.8315 4.0527 -1.7390 17 6 6.0552 5.1257 -0.9175 18 1 5.1565 5.5295 -1.3836 19 7 7.1479 6.1169 -0.6334 20 6 7.2175 7.4645 -0.8669 21 1 6.3868 7.9757 -1.3303 22 6 8.3559 8.1732 -0.5080 23 7 9.3685 7.5498 0.0563 24 14 8.4505 10.0115 -0.8259 25 1 7.9238 10.7454 0.3528 26 1 9.8642 10.4010 -1.0604 27 1 7.6389 10.3493 -2.0226 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8901 33 1 2.0700 1.5873 -2.1491 34 1 0.5490 2.1251 -1.3971 35 1 1.9990 3.1539 -1.3077 36 1 3.8570 0.8800 1.0114 37 1 4.0030 0.9835 -0.7596 38 1 6.0087 2.3755 0.3811 39 1 7.2888 5.1370 2.0079 40 1 7.6237 3.5137 1.3231 41 1 8.9886 4.3756 -1.8727 42 1 8.5076 3.1196 -0.6888 43 1 6.3799 3.0692 -1.6095 44 1 6.8637 4.3258 -2.7937 45 1 10.1641 8.0450 0.3068 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001109206796.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:04:19 Heat of formation + Delta-G solvation = -11.668152 kcal Electronic energy + Delta-G solvation = -22990.255972 eV Core-core repulsion = 19815.227367 eV Total energy + Delta-G solvation = -3175.028606 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.07344 -38.61214 -36.29775 -33.85063 -32.32244 -30.86960 -29.31243 -29.02881 -28.10885 -26.87009 -24.41071 -23.83286 -21.39296 -20.62064 -19.80464 -19.43502 -18.50833 -17.14294 -16.61501 -15.72535 -15.27217 -14.90959 -14.86874 -14.55471 -14.03470 -13.89744 -13.78646 -13.12714 -12.57523 -12.37727 -12.25160 -11.96422 -11.89222 -11.70735 -11.48098 -11.39697 -11.02317 -10.93770 -10.88581 -10.85331 -10.79496 -10.67992 -10.63650 -10.20216 -10.07882 -9.81845 -9.47611 -9.31164 -9.18417 -8.92080 -8.44178 -6.89891 -5.71778 -3.09555 2.96178 3.40532 3.45418 3.46945 3.54947 4.46513 4.69809 4.74847 4.79533 5.15156 5.16553 5.23385 5.37637 5.39887 5.47988 5.59577 5.60474 5.62876 5.69903 5.83380 5.84380 5.86726 5.94365 5.97122 5.99446 6.08227 6.13474 6.14392 6.32689 6.35158 6.36246 6.51025 6.56011 6.62501 6.73964 6.84933 6.99283 7.02632 7.29560 7.54117 7.77219 7.91779 8.18315 8.60650 9.11715 9.74225 10.54909 11.37941 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.033416 B = 0.003809 C = 0.003628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.720005 B = 7350.132205 C = 7714.940269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.075 4.075 4 H 0.077 0.923 5 C -0.154 4.154 6 C -0.138 4.138 7 C 0.507 3.493 8 O -0.541 6.541 9 N -0.715 5.715 10 C 0.128 3.872 11 H 0.080 0.920 12 C -0.140 4.140 13 C 0.154 3.846 14 H 0.154 0.846 15 C -0.137 4.137 16 C -0.129 4.129 17 C 0.129 3.871 18 H 0.084 0.916 19 N -0.591 5.591 20 C -0.209 4.209 21 H 0.079 0.921 22 C -0.013 4.013 23 N -0.924 5.924 24 Si 0.917 3.083 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.282 1.282 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.045 0.955 34 H 0.051 0.949 35 H 0.077 0.923 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.394 0.606 39 H 0.064 0.936 40 H 0.054 0.946 41 H 0.054 0.946 42 H 0.044 0.956 43 H 0.051 0.949 44 H 0.049 0.951 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.483 -16.285 0.484 18.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.094 4.094 4 H 0.095 0.905 5 C -0.211 4.211 6 C -0.179 4.179 7 C 0.293 3.707 8 O -0.418 6.418 9 N -0.366 5.366 10 C 0.022 3.978 11 H 0.098 0.902 12 C -0.180 4.180 13 C 0.047 3.953 14 H 0.171 0.829 15 C -0.177 4.177 16 C -0.169 4.169 17 C 0.020 3.980 18 H 0.102 0.898 19 N -0.311 5.311 20 C -0.337 4.337 21 H 0.097 0.903 22 C -0.208 4.208 23 N -0.573 5.573 24 Si 0.747 3.253 25 H -0.217 1.217 26 H -0.217 1.217 27 H -0.208 1.208 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.096 0.904 36 H 0.106 0.894 37 H 0.108 0.892 38 H 0.228 0.772 39 H 0.083 0.917 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.063 0.937 43 H 0.069 0.931 44 H 0.068 0.932 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -9.894 -15.279 0.473 18.209 hybrid contribution 0.394 0.453 -0.164 0.622 sum -9.500 -14.826 0.310 17.611 Atomic orbital electron populations 1.21807 0.95884 1.01234 1.02126 1.21598 0.96060 0.96373 1.01723 1.20896 0.92969 0.95620 0.99914 0.90503 1.21992 1.00860 1.02511 0.95761 1.21774 0.97653 0.94666 1.03761 1.20615 0.82503 0.91283 0.76318 1.90659 1.54696 1.46627 1.49827 1.46298 1.07040 1.09504 1.73722 1.22601 0.95611 0.80466 0.99151 0.90189 1.23278 0.94860 0.99381 1.00493 1.23764 0.96171 0.86572 0.88817 0.82894 1.23050 0.95987 0.98410 1.00204 1.22890 0.96870 0.98052 0.99094 1.23184 0.92261 0.89494 0.93062 0.89784 1.46490 1.12709 1.03098 1.68834 1.19069 1.00487 0.81288 1.32856 0.90335 1.24694 0.96299 0.98262 1.01552 1.69437 1.06299 1.34083 1.47445 0.86027 0.76786 0.84608 0.77837 1.21655 1.21695 1.20758 0.92768 0.92378 0.93064 0.92062 0.92180 0.93553 0.92977 0.90425 0.89397 0.89249 0.77224 0.91709 0.92789 0.92731 0.93689 0.93065 0.93177 0.93592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.67 37.16 0.36 -0.85 16 2 C -0.12 -0.99 5.40 -26.73 -0.14 -1.13 16 3 C -0.08 -0.80 2.04 -90.62 -0.18 -0.98 16 4 H 0.08 0.94 7.95 -51.93 -0.41 0.52 16 5 C -0.15 -1.79 8.69 37.16 0.32 -1.47 16 6 C -0.14 -1.43 5.17 -27.88 -0.14 -1.57 16 7 C 0.51 7.43 7.54 -10.98 -0.08 7.35 16 8 O -0.54 -10.08 13.69 5.56 0.08 -10.00 16 9 N -0.71 -10.39 3.63 -51.39 -0.19 -10.57 16 10 C 0.13 2.40 3.08 -65.43 -0.20 2.19 16 11 H 0.08 1.70 7.70 -51.93 -0.40 1.30 16 12 C -0.14 -2.67 6.20 -24.24 -0.15 -2.82 16 13 C 0.15 3.46 4.72 -62.80 -0.30 3.16 16 14 H 0.15 3.95 5.52 -51.93 -0.29 3.66 16 15 C -0.14 -2.64 6.44 -24.24 -0.16 -2.80 16 16 C -0.13 -2.40 6.33 -24.24 -0.15 -2.55 16 17 C 0.13 2.73 5.35 -62.80 -0.34 2.40 16 18 H 0.08 1.87 8.14 -51.93 -0.42 1.45 16 19 N -0.59 -14.84 2.99 -145.81 -0.44 -15.27 16 20 C -0.21 -5.81 10.59 -15.06 -0.16 -5.97 16 21 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 22 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 23 N -0.92 -26.30 10.46 55.49 0.58 -25.72 16 24 Si 0.92 22.16 29.55 -169.99 -5.02 17.14 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 26 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 27 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.47 6.57 -51.93 -0.34 0.13 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.05 0.55 6.56 -51.93 -0.34 0.21 16 35 H 0.08 1.14 5.95 -51.93 -0.31 0.83 16 36 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.39 4.65 8.02 -40.82 -0.33 4.32 16 39 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.05 0.85 7.34 -51.93 -0.38 0.47 16 41 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.04 0.73 7.82 -51.93 -0.41 0.32 16 43 H 0.05 0.81 6.48 -51.93 -0.34 0.47 16 44 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 343.97 15.07 5.18 5.18 Total: -1.00 -30.33 343.97 -8.97 -39.29 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -7.74 Total: 5.46 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: -1.42 Total: -5.50 kcal Atomic # 7 Polarization: -51.52 SS G_CDS: -0.04 Total: -51.57 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.08 Total: -10.00 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.33 -8.97 -39.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109206796.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.625 kcal (2) G-P(sol) polarization free energy of solvation -30.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds