Wall clock time and date at job start Tue Mar 31 2020 03:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47214 * 2 1 4 4 H 1.09000 * 109.47166 * 54.99227 * 3 2 1 5 5 C 1.53009 * 109.46905 * 294.99535 * 3 2 1 6 6 C 1.53001 * 109.47116 * 174.99719 * 3 2 1 7 7 C 1.50702 * 109.46731 * 184.99581 * 6 3 2 8 8 O 1.21281 * 120.00320 * 0.02562 * 7 6 3 9 9 N 1.34781 * 119.99471 * 180.02562 * 7 6 3 10 10 C 1.46501 * 119.99692 * 179.97438 * 9 7 6 11 11 H 1.09004 * 110.56171 * 36.97407 * 10 9 7 12 12 C 1.54858 * 110.62737 * 160.04229 * 10 9 7 13 13 C 1.55841 * 103.44450 * 118.49193 * 12 10 9 14 14 H 1.08997 * 116.12806 * 159.15314 * 13 12 10 15 15 C 1.55853 * 105.06300 * 288.17909 * 13 12 10 16 16 C 1.54845 * 103.44721 * 71.82556 * 15 13 12 17 17 C 1.55845 * 110.62893 * 274.07047 * 10 9 7 18 18 H 1.09001 * 115.55985 * 82.69938 * 17 10 9 19 19 N 1.50239 * 101.04975 * 208.57190 * 17 10 9 20 20 C 1.36940 * 130.83857 * 233.98593 * 19 17 10 21 21 H 1.07992 * 119.99634 * 0.02562 * 20 19 17 22 22 C 1.38816 * 119.99914 * 180.02562 * 20 19 17 23 23 N 1.31617 * 119.99759 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99858 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47092 * 89.99994 * 24 22 20 26 26 H 1.48502 * 109.46873 * 210.00029 * 24 22 20 27 27 H 1.48499 * 109.47038 * 330.00041 * 24 22 20 28 28 H 1.08997 * 109.47517 * 300.00235 * 1 2 3 29 29 H 1.09001 * 109.46887 * 60.00501 * 1 2 3 30 30 H 1.09005 * 109.47441 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47320 * 239.99426 * 2 1 3 32 32 H 1.09001 * 109.46887 * 119.99499 * 2 1 3 33 33 H 1.08993 * 109.46665 * 300.00084 * 5 3 2 34 34 H 1.08997 * 109.46881 * 60.00046 * 5 3 2 35 35 H 1.08992 * 109.46742 * 180.02562 * 5 3 2 36 36 H 1.08996 * 109.47094 * 304.99643 * 6 3 2 37 37 H 1.09001 * 109.47088 * 65.00108 * 6 3 2 38 38 H 0.96996 * 120.00175 * 359.97438 * 9 7 6 39 39 H 1.08995 * 110.62846 * 236.98343 * 12 10 9 40 40 H 1.09006 * 110.62346 * 0.02562 * 12 10 9 41 41 H 1.09002 * 110.62308 * 190.31764 * 15 13 12 42 42 H 1.08995 * 110.62418 * 313.17142 * 15 13 12 43 43 H 1.08997 * 110.62661 * 241.51079 * 16 15 13 44 44 H 1.08997 * 110.62719 * 118.48710 * 16 15 13 45 45 H 0.97004 * 119.99654 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8417 5 6 1.6353 2.1265 -1.3075 6 6 3.5648 1.4443 0.1258 7 6 4.0569 2.8633 0.2492 8 8 3.2659 3.7826 0.2381 9 7 5.3761 3.1108 0.3719 10 6 5.8546 4.4903 0.4913 11 1 5.1617 5.0857 1.0859 12 6 7.2751 4.5236 1.1070 13 6 8.1405 5.1747 -0.0136 14 1 9.0832 5.6194 0.3052 15 6 8.2519 4.0860 -1.1233 16 6 6.8315 4.0527 -1.7390 17 6 6.0552 5.1257 -0.9175 18 1 5.1565 5.5295 -1.3836 19 7 7.1479 6.1169 -0.6334 20 6 7.2175 7.4645 -0.8669 21 1 6.3868 7.9757 -1.3303 22 6 8.3559 8.1732 -0.5080 23 7 9.3685 7.5498 0.0563 24 14 8.4505 10.0115 -0.8259 25 1 7.9238 10.7454 0.3528 26 1 9.8642 10.4010 -1.0604 27 1 7.6389 10.3493 -2.0226 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8901 33 1 2.0700 1.5873 -2.1491 34 1 0.5490 2.1251 -1.3971 35 1 1.9990 3.1539 -1.3077 36 1 3.8570 0.8800 1.0114 37 1 4.0030 0.9835 -0.7596 38 1 6.0087 2.3755 0.3811 39 1 7.2888 5.1370 2.0079 40 1 7.6237 3.5137 1.3231 41 1 8.9886 4.3756 -1.8727 42 1 8.5076 3.1196 -0.6888 43 1 6.3799 3.0692 -1.6095 44 1 6.8637 4.3258 -2.7937 45 1 10.1641 8.0450 0.3068 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001109206796.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:04:18 Heat of formation + Delta-G solvation = -29.234996 kcal Electronic energy + Delta-G solvation = -22991.017728 eV Core-core repulsion = 19815.227367 eV Total energy + Delta-G solvation = -3175.790361 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.48363 -39.99663 -37.18762 -35.38198 -34.19204 -31.70925 -31.00688 -30.67501 -29.46378 -28.09077 -26.13826 -24.83997 -22.84662 -21.93501 -21.15327 -20.62989 -20.10066 -18.93238 -17.88557 -16.88888 -16.80648 -16.56752 -16.07699 -15.83527 -15.56412 -15.05359 -14.85272 -14.18149 -14.10882 -13.75693 -13.48713 -13.34389 -13.22662 -12.93695 -12.79842 -12.74444 -12.70477 -12.54532 -12.35118 -12.12526 -12.00209 -11.90238 -11.70279 -11.54100 -11.48680 -11.34226 -11.17464 -11.03293 -10.77798 -10.52874 -9.90233 -8.85797 -7.80789 -5.19953 1.44827 1.46235 1.54400 1.81677 2.31293 2.51383 3.32574 3.52202 3.83294 3.91878 3.98988 4.05137 4.13907 4.15265 4.34448 4.43327 4.48797 4.51642 4.62186 4.67941 4.71453 4.76427 4.79805 4.82493 4.89920 4.96232 4.99547 5.07936 5.15305 5.18300 5.21040 5.26863 5.29778 5.33718 5.39447 5.46747 5.54863 5.59827 5.64808 5.80010 5.89919 6.27430 6.76764 7.04986 7.47727 7.68269 8.54580 9.26067 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.033416 B = 0.003809 C = 0.003628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.720005 B = 7350.132205 C = 7714.940269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.113 4.113 3 C -0.075 4.075 4 H 0.053 0.947 5 C -0.152 4.152 6 C -0.128 4.128 7 C 0.502 3.498 8 O -0.586 6.586 9 N -0.702 5.702 10 C 0.147 3.853 11 H 0.046 0.954 12 C -0.125 4.125 13 C 0.137 3.863 14 H 0.120 0.880 15 C -0.125 4.125 16 C -0.114 4.114 17 C 0.119 3.881 18 H 0.061 0.939 19 N -0.620 5.620 20 C -0.226 4.226 21 H 0.069 0.931 22 C -0.063 4.063 23 N -0.943 5.943 24 Si 0.976 3.024 25 H -0.289 1.289 26 H -0.290 1.290 27 H -0.277 1.277 28 H 0.046 0.954 29 H 0.052 0.948 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.040 0.960 36 H 0.119 0.881 37 H 0.117 0.883 38 H 0.414 0.586 39 H 0.043 0.957 40 H 0.098 0.902 41 H 0.033 0.967 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.039 0.961 45 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.627 -19.669 0.409 21.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.150 4.150 3 C -0.094 4.094 4 H 0.072 0.928 5 C -0.210 4.210 6 C -0.167 4.167 7 C 0.291 3.709 8 O -0.466 6.466 9 N -0.355 5.355 10 C 0.040 3.960 11 H 0.064 0.936 12 C -0.165 4.165 13 C 0.031 3.969 14 H 0.137 0.863 15 C -0.164 4.164 16 C -0.154 4.154 17 C 0.011 3.989 18 H 0.079 0.921 19 N -0.342 5.342 20 C -0.355 4.355 21 H 0.087 0.913 22 C -0.256 4.256 23 N -0.593 5.593 24 Si 0.805 3.195 25 H -0.216 1.216 26 H -0.216 1.216 27 H -0.202 1.202 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.059 0.941 36 H 0.137 0.863 37 H 0.135 0.865 38 H 0.252 0.748 39 H 0.062 0.938 40 H 0.116 0.884 41 H 0.052 0.948 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.058 0.942 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -10.042 -18.729 0.396 21.255 hybrid contribution 0.351 1.510 -0.143 1.557 sum -9.692 -17.219 0.253 19.761 Atomic orbital electron populations 1.21830 0.96002 1.01936 1.01560 1.21548 0.95952 0.94473 1.03039 1.20890 0.93399 0.96948 0.98188 0.92816 1.21949 1.01194 1.00630 0.97185 1.21822 0.97105 0.91380 1.06430 1.21519 0.81822 0.92858 0.74734 1.90666 1.55830 1.48612 1.51510 1.46055 1.07724 1.08034 1.73674 1.21994 0.94826 0.82467 0.96740 0.93566 1.23106 0.94071 1.01039 0.98239 1.23699 0.94995 0.87192 0.91035 0.86267 1.22942 0.95751 0.99170 0.98542 1.22792 0.96063 0.98737 0.97777 1.23312 0.91024 0.89652 0.94952 0.92094 1.46760 1.14818 1.02970 1.69687 1.19292 1.00326 0.83260 1.32634 0.91333 1.25408 0.96208 1.01928 1.02032 1.69667 1.06406 1.34987 1.48242 0.85113 0.76562 0.80227 0.77641 1.21632 1.21585 1.20188 0.93464 0.92935 0.91698 0.90750 0.90742 0.92164 0.92607 0.94072 0.86295 0.86501 0.74809 0.93832 0.88354 0.94765 0.89239 0.89178 0.94228 0.94102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.10 9.67 71.98 0.70 -1.40 16 2 C -0.11 -1.45 5.40 30.59 0.17 -1.29 16 3 C -0.08 -1.42 2.04 -10.79 -0.02 -1.44 16 4 H 0.05 1.26 7.95 -2.39 -0.02 1.24 16 5 C -0.15 -3.37 8.69 71.99 0.63 -2.74 16 6 C -0.13 -2.12 5.17 29.85 0.15 -1.97 16 7 C 0.50 13.69 7.54 87.66 0.66 14.35 16 8 O -0.59 -22.03 13.69 -3.03 -0.04 -22.08 16 9 N -0.70 -18.34 3.63 -434.89 -1.58 -19.92 16 10 C 0.15 5.44 3.08 46.61 0.14 5.58 16 11 H 0.05 2.03 7.70 -2.38 -0.02 2.01 16 12 C -0.12 -4.59 6.20 32.21 0.20 -4.39 16 13 C 0.14 6.16 4.72 46.23 0.22 6.38 16 14 H 0.12 6.30 5.52 -2.39 -0.01 6.29 16 15 C -0.12 -4.55 6.44 32.21 0.21 -4.34 16 16 C -0.11 -4.01 6.33 32.21 0.20 -3.80 16 17 C 0.12 5.07 5.35 46.23 0.25 5.31 16 18 H 0.06 2.83 8.14 -2.39 -0.02 2.81 16 19 N -0.62 -32.03 2.99 -615.23 -1.84 -33.86 16 20 C -0.23 -13.07 10.59 84.03 0.89 -12.18 16 21 H 0.07 3.94 7.83 -2.91 -0.02 3.92 16 22 C -0.06 -3.60 5.50 84.86 0.47 -3.14 16 23 N -0.94 -55.29 10.46 21.65 0.23 -55.07 16 24 Si 0.98 46.78 29.55 68.60 2.03 48.81 16 25 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 26 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 27 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 28 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.05 0.75 6.57 -2.39 -0.02 0.74 16 30 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 31 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 32 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.05 1.15 6.56 -2.39 -0.02 1.13 16 35 H 0.04 1.22 5.95 -2.39 -0.01 1.20 16 36 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.41 7.58 8.02 -92.71 -0.74 6.84 16 39 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.10 2.71 7.34 -2.38 -0.02 2.69 16 41 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.09 2.47 7.82 -2.39 -0.02 2.45 16 43 H 0.09 2.44 6.48 -2.39 -0.02 2.43 16 44 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 45 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 Total: -1.00 -70.85 343.97 3.87 -66.97 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: 0.22 Total: 20.21 kcal Atomic # 6 Polarization: -9.93 SS G_CDS: 4.86 Total: -5.07 kcal Atomic # 7 Polarization: -105.66 SS G_CDS: -3.19 Total: -108.85 kcal Atomic # 8 Polarization: -22.03 SS G_CDS: -0.04 Total: -22.08 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.03 Total: 48.81 kcal Total: -70.85 3.87 -66.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109206796.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.738 kcal (2) G-P(sol) polarization free energy of solvation -70.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds