Wall clock time and date at job start Tue Mar 31 2020 03:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.09004 * 109.47346 * 305.00346 * 3 2 1 5 5 C 1.53004 * 109.47236 * 65.00086 * 3 2 1 6 6 C 1.52997 * 109.47504 * 185.00270 * 3 2 1 7 7 C 1.50691 * 109.47514 * 175.00045 * 6 3 2 8 8 O 1.21290 * 120.00138 * 359.97438 * 7 6 3 9 9 N 1.34780 * 120.00607 * 179.97438 * 7 6 3 10 10 C 1.46493 * 120.00471 * 179.97438 * 9 7 6 11 11 H 1.08998 * 110.55844 * 34.29972 * 10 9 7 12 12 C 1.54849 * 110.62910 * 271.39849 * 10 9 7 13 13 C 1.55844 * 103.44576 * 241.51248 * 12 10 9 14 14 H 1.09002 * 115.56023 * 159.57235 * 13 12 10 15 15 C 1.55848 * 105.06397 * 288.17092 * 13 12 10 16 16 C 1.54862 * 103.44341 * 71.82495 * 15 13 12 17 17 C 1.55765 * 103.59204 * 359.94246 * 16 15 13 18 18 H 1.09005 * 115.65096 * 159.69379 * 17 16 15 19 19 N 1.50231 * 101.05118 * 32.93584 * 13 12 10 20 20 C 1.36940 * 130.83580 * 126.01717 * 19 13 12 21 21 H 1.08004 * 119.99475 * 180.02562 * 20 19 13 22 22 C 1.38807 * 120.00230 * 0.02562 * 20 19 13 23 23 N 1.31620 * 120.00096 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00088 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47423 * 89.99745 * 24 22 20 26 26 H 1.48497 * 109.47341 * 209.99817 * 24 22 20 27 27 H 1.48504 * 109.47315 * 329.99555 * 24 22 20 28 28 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 30 30 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 31 31 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 32 32 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 33 33 H 1.09001 * 109.46917 * 300.00567 * 5 3 2 34 34 H 1.09004 * 109.46741 * 59.99889 * 5 3 2 35 35 H 1.09000 * 109.47403 * 180.02562 * 5 3 2 36 36 H 1.09003 * 109.46810 * 294.99909 * 6 3 2 37 37 H 1.08998 * 109.47247 * 54.99778 * 6 3 2 38 38 H 0.97002 * 119.99149 * 359.97438 * 9 7 6 39 39 H 1.09004 * 110.62692 * 0.02562 * 12 10 9 40 40 H 1.09001 * 110.62999 * 122.86026 * 12 10 9 41 41 H 1.08996 * 110.63074 * 190.31224 * 15 13 12 42 42 H 1.08998 * 110.62592 * 313.34455 * 15 13 12 43 43 H 1.08994 * 110.62198 * 118.48898 * 16 15 13 44 44 H 1.08994 * 110.62546 * 241.35181 * 16 15 13 45 45 H 0.97001 * 120.00273 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 1.6352 2.1266 1.3074 6 6 3.5648 1.4444 -0.1258 7 6 4.0569 2.8634 -0.2493 8 8 3.2658 3.7827 -0.2383 9 7 5.3760 3.1110 -0.3720 10 6 5.8544 4.4904 -0.4926 11 1 5.2323 5.1641 0.0966 12 6 5.8811 4.9307 -1.9769 13 6 7.3864 5.2402 -2.2360 14 1 7.6947 5.2336 -3.2815 15 6 7.6672 6.5627 -1.4607 16 6 7.6405 6.1224 0.0238 17 6 7.3459 4.5948 -0.0528 18 1 7.6171 4.0170 0.8309 19 7 8.0463 4.2336 -1.3370 20 6 8.9932 3.2808 -1.6026 21 1 9.3503 2.6389 -0.8108 22 6 9.4942 3.1399 -2.8894 23 7 9.0586 3.9217 -3.8545 24 14 10.7854 1.8396 -3.2519 25 1 10.1163 0.5722 -3.6405 26 1 11.6546 2.3016 -4.3637 27 1 11.6121 1.6113 -2.0395 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8934 -0.5139 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 0.5489 2.1251 1.3970 34 1 2.0699 1.5875 2.1492 35 1 1.9982 3.1544 1.3072 36 1 4.0029 0.9837 0.7596 37 1 3.8570 0.8801 -1.0114 38 1 6.0087 2.3757 -0.3804 39 1 5.5380 4.1229 -2.6233 40 1 5.2723 5.8228 -2.1239 41 1 8.6462 6.9623 -1.7250 42 1 6.8857 7.2966 -1.6576 43 1 8.6062 6.3037 0.4954 44 1 6.8476 6.6401 0.5636 45 1 9.4090 3.8235 -4.7537 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001110491635.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:04:27 Heat of formation + Delta-G solvation = -17.494772 kcal Electronic energy + Delta-G solvation = -22963.956341 eV Core-core repulsion = 19788.675075 eV Total energy + Delta-G solvation = -3175.281267 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.85175 -38.59884 -36.24274 -33.68691 -32.52788 -30.80089 -29.10630 -28.91386 -28.17507 -26.88485 -24.30976 -23.92953 -21.45571 -20.07784 -19.82950 -19.46999 -18.59384 -17.01402 -16.59738 -15.76807 -15.42772 -14.85346 -14.78276 -14.15264 -14.05211 -13.89929 -13.46809 -13.23608 -12.75812 -12.45506 -12.09847 -11.96188 -11.84891 -11.77433 -11.38188 -11.17031 -11.12054 -10.93654 -10.91138 -10.78456 -10.61721 -10.56148 -10.49479 -10.35680 -10.10398 -9.91971 -9.54458 -9.21345 -9.07923 -8.95563 -8.37408 -6.95503 -5.75504 -3.14422 3.07306 3.34851 3.40093 3.42329 3.70370 4.39277 4.79316 4.84089 4.88791 5.12023 5.24873 5.27488 5.35909 5.48340 5.59136 5.65900 5.66333 5.67714 5.72521 5.80230 5.88050 5.90565 6.00800 6.03590 6.06555 6.11923 6.14816 6.20242 6.33063 6.41874 6.43993 6.50331 6.53974 6.61924 6.77118 6.83935 6.96542 7.17334 7.34371 7.46012 7.78775 8.08207 8.15073 8.72586 9.06132 9.69153 10.50793 11.33663 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.018411 B = 0.004613 C = 0.003960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.504962 B = 6068.646204 C = 7068.976941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.074 4.074 4 H 0.077 0.923 5 C -0.153 4.153 6 C -0.139 4.139 7 C 0.509 3.491 8 O -0.552 6.552 9 N -0.708 5.708 10 C 0.130 3.870 11 H 0.077 0.923 12 C -0.142 4.142 13 C 0.156 3.844 14 H 0.151 0.849 15 C -0.139 4.139 16 C -0.128 4.128 17 C 0.124 3.876 18 H 0.087 0.913 19 N -0.591 5.591 20 C -0.215 4.215 21 H 0.078 0.922 22 C -0.010 4.010 23 N -0.919 5.919 24 Si 0.914 3.086 25 H -0.290 1.290 26 H -0.291 1.291 27 H -0.282 1.282 28 H 0.050 0.950 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.050 0.950 34 H 0.044 0.956 35 H 0.075 0.925 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.402 0.598 39 H 0.058 0.942 40 H 0.052 0.948 41 H 0.055 0.945 42 H 0.048 0.952 43 H 0.056 0.944 44 H 0.051 0.949 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.883 -3.961 7.834 13.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.093 4.093 4 H 0.095 0.905 5 C -0.210 4.210 6 C -0.179 4.179 7 C 0.295 3.705 8 O -0.431 6.431 9 N -0.357 5.357 10 C 0.023 3.977 11 H 0.095 0.905 12 C -0.182 4.182 13 C 0.050 3.950 14 H 0.168 0.832 15 C -0.178 4.178 16 C -0.167 4.167 17 C 0.016 3.984 18 H 0.105 0.895 19 N -0.312 5.312 20 C -0.343 4.343 21 H 0.096 0.904 22 C -0.206 4.206 23 N -0.567 5.567 24 Si 0.745 3.255 25 H -0.217 1.217 26 H -0.217 1.217 27 H -0.208 1.208 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.094 0.906 36 H 0.106 0.894 37 H 0.108 0.892 38 H 0.236 0.764 39 H 0.077 0.923 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.067 0.933 43 H 0.075 0.925 44 H 0.069 0.931 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -11.201 -3.471 7.641 13.997 hybrid contribution 1.044 -1.042 -0.221 1.491 sum -10.158 -4.513 7.420 13.364 Atomic orbital electron populations 1.21803 0.95934 1.01209 1.02028 1.21603 0.95975 0.96431 1.01836 1.20884 0.93096 0.95594 0.99751 0.90503 1.21985 1.00748 1.02352 0.95877 1.21761 0.97404 0.94803 1.03947 1.20599 0.82532 0.91255 0.76120 1.90615 1.54744 1.46652 1.51080 1.46069 1.06973 1.09924 1.72756 1.22575 0.95910 0.81675 0.97530 0.90529 1.23446 1.00068 0.99719 0.95016 1.23680 0.87491 0.85183 0.98685 0.83227 1.23070 1.00037 0.99257 0.95486 1.22855 0.99902 0.96659 0.97333 1.23220 0.89910 0.94202 0.91059 0.89451 1.46609 1.44216 1.37686 1.02659 1.19001 1.12733 1.08432 0.94085 0.90442 1.24697 1.00460 0.99738 0.95686 1.69493 1.45830 1.40368 1.01026 0.86075 0.80962 0.80830 0.77604 1.21731 1.21709 1.20817 0.93074 0.92485 0.92755 0.92095 0.92045 0.93049 0.93648 0.90580 0.89365 0.89160 0.76409 0.92349 0.92961 0.92645 0.93341 0.92508 0.93055 0.93568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.67 37.16 0.36 -0.98 16 2 C -0.12 -1.16 5.40 -26.73 -0.14 -1.30 16 3 C -0.07 -0.88 2.04 -90.62 -0.18 -1.06 16 4 H 0.08 1.04 7.95 -51.93 -0.41 0.63 16 5 C -0.15 -1.82 8.69 37.16 0.32 -1.50 16 6 C -0.14 -1.72 5.17 -27.89 -0.14 -1.86 16 7 C 0.51 8.30 7.55 -10.99 -0.08 8.21 16 8 O -0.55 -10.58 13.65 5.55 0.08 -10.50 16 9 N -0.71 -12.06 5.08 -51.40 -0.26 -12.32 16 10 C 0.13 2.42 2.75 -65.44 -0.18 2.24 16 11 H 0.08 1.45 7.30 -51.93 -0.38 1.07 16 12 C -0.14 -2.93 6.22 -24.24 -0.15 -3.08 16 13 C 0.16 3.56 4.69 -62.80 -0.29 3.27 16 14 H 0.15 3.92 5.58 -51.93 -0.29 3.63 16 15 C -0.14 -2.76 6.44 -24.23 -0.16 -2.92 16 16 C -0.13 -2.32 6.43 -24.28 -0.16 -2.48 16 17 C 0.12 2.41 5.08 -62.59 -0.32 2.09 16 18 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 19 N -0.59 -13.91 2.99 -145.53 -0.44 -14.34 16 20 C -0.21 -5.56 10.59 -15.06 -0.16 -5.72 16 21 H 0.08 1.93 7.83 -52.48 -0.41 1.52 16 22 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 23 N -0.92 -25.68 10.48 55.49 0.58 -25.10 16 24 Si 0.91 21.25 29.55 -169.99 -5.02 16.22 16 25 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 27 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.49 6.57 -51.93 -0.34 0.15 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.05 0.55 6.56 -51.93 -0.34 0.21 16 34 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.08 1.11 5.95 -51.93 -0.31 0.80 16 36 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 38 H 0.40 6.61 8.64 -40.82 -0.35 6.25 16 39 H 0.06 1.31 7.98 -51.93 -0.41 0.89 16 40 H 0.05 1.02 7.82 -51.93 -0.41 0.61 16 41 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.05 0.86 7.82 -51.93 -0.41 0.46 16 43 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.05 0.83 7.83 -51.93 -0.41 0.42 16 45 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 346.86 15.07 5.23 5.23 Total: -1.00 -28.83 346.86 -9.05 -37.89 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: -7.83 Total: 8.39 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: -1.38 Total: -5.45 kcal Atomic # 7 Polarization: -51.65 SS G_CDS: -0.12 Total: -51.77 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.08 Total: -10.50 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -28.83 -9.05 -37.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110491635.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.390 kcal (2) G-P(sol) polarization free energy of solvation -28.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds