Wall clock time and date at job start Tue Mar 31 2020 03:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.09004 * 109.47346 * 305.00346 * 3 2 1 5 5 C 1.53004 * 109.47236 * 65.00086 * 3 2 1 6 6 C 1.52997 * 109.47504 * 185.00270 * 3 2 1 7 7 C 1.50691 * 109.47514 * 175.00045 * 6 3 2 8 8 O 1.21290 * 120.00138 * 359.97438 * 7 6 3 9 9 N 1.34780 * 120.00607 * 179.97438 * 7 6 3 10 10 C 1.46493 * 120.00471 * 179.97438 * 9 7 6 11 11 H 1.08998 * 110.55844 * 34.29972 * 10 9 7 12 12 C 1.54849 * 110.62910 * 271.39849 * 10 9 7 13 13 C 1.55844 * 103.44576 * 241.51248 * 12 10 9 14 14 H 1.09002 * 115.56023 * 159.57235 * 13 12 10 15 15 C 1.55848 * 105.06397 * 288.17092 * 13 12 10 16 16 C 1.54862 * 103.44341 * 71.82495 * 15 13 12 17 17 C 1.55765 * 103.59204 * 359.94246 * 16 15 13 18 18 H 1.09005 * 115.65096 * 159.69379 * 17 16 15 19 19 N 1.50231 * 101.05118 * 32.93584 * 13 12 10 20 20 C 1.36940 * 130.83580 * 126.01717 * 19 13 12 21 21 H 1.08004 * 119.99475 * 180.02562 * 20 19 13 22 22 C 1.38807 * 120.00230 * 0.02562 * 20 19 13 23 23 N 1.31620 * 120.00096 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00088 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47423 * 89.99745 * 24 22 20 26 26 H 1.48497 * 109.47341 * 209.99817 * 24 22 20 27 27 H 1.48504 * 109.47315 * 329.99555 * 24 22 20 28 28 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 30 30 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 31 31 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 32 32 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 33 33 H 1.09001 * 109.46917 * 300.00567 * 5 3 2 34 34 H 1.09004 * 109.46741 * 59.99889 * 5 3 2 35 35 H 1.09000 * 109.47403 * 180.02562 * 5 3 2 36 36 H 1.09003 * 109.46810 * 294.99909 * 6 3 2 37 37 H 1.08998 * 109.47247 * 54.99778 * 6 3 2 38 38 H 0.97002 * 119.99149 * 359.97438 * 9 7 6 39 39 H 1.09004 * 110.62692 * 0.02562 * 12 10 9 40 40 H 1.09001 * 110.62999 * 122.86026 * 12 10 9 41 41 H 1.08996 * 110.63074 * 190.31224 * 15 13 12 42 42 H 1.08998 * 110.62592 * 313.34455 * 15 13 12 43 43 H 1.08994 * 110.62198 * 118.48898 * 16 15 13 44 44 H 1.08994 * 110.62546 * 241.35181 * 16 15 13 45 45 H 0.97001 * 120.00273 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 1.6352 2.1266 1.3074 6 6 3.5648 1.4444 -0.1258 7 6 4.0569 2.8634 -0.2493 8 8 3.2658 3.7827 -0.2383 9 7 5.3760 3.1110 -0.3720 10 6 5.8544 4.4904 -0.4926 11 1 5.2323 5.1641 0.0966 12 6 5.8811 4.9307 -1.9769 13 6 7.3864 5.2402 -2.2360 14 1 7.6947 5.2336 -3.2815 15 6 7.6672 6.5627 -1.4607 16 6 7.6405 6.1224 0.0238 17 6 7.3459 4.5948 -0.0528 18 1 7.6171 4.0170 0.8309 19 7 8.0463 4.2336 -1.3370 20 6 8.9932 3.2808 -1.6026 21 1 9.3503 2.6389 -0.8108 22 6 9.4942 3.1399 -2.8894 23 7 9.0586 3.9217 -3.8545 24 14 10.7854 1.8396 -3.2519 25 1 10.1163 0.5722 -3.6405 26 1 11.6546 2.3016 -4.3637 27 1 11.6121 1.6113 -2.0395 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8934 -0.5139 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 0.5489 2.1251 1.3970 34 1 2.0699 1.5875 2.1492 35 1 1.9982 3.1544 1.3072 36 1 4.0029 0.9837 0.7596 37 1 3.8570 0.8801 -1.0114 38 1 6.0087 2.3757 -0.3804 39 1 5.5380 4.1229 -2.6233 40 1 5.2723 5.8228 -2.1239 41 1 8.6462 6.9623 -1.7250 42 1 6.8857 7.2966 -1.6576 43 1 8.6062 6.3037 0.4954 44 1 6.8476 6.6401 0.5636 45 1 9.4090 3.8235 -4.7537 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001110491635.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:04:26 Heat of formation + Delta-G solvation = -33.378171 kcal Electronic energy + Delta-G solvation = -22964.645097 eV Core-core repulsion = 19788.675075 eV Total energy + Delta-G solvation = -3175.970023 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.30462 -40.04819 -37.22699 -35.19529 -34.38329 -31.73272 -30.94824 -30.42161 -29.57737 -28.08833 -26.10404 -24.93072 -22.86461 -21.54099 -21.22715 -20.67460 -20.18537 -18.83862 -17.86843 -17.21389 -16.74201 -16.50226 -15.93800 -15.66709 -15.41762 -15.09946 -14.85287 -14.48675 -13.98730 -13.74388 -13.63558 -13.38391 -12.96062 -12.90235 -12.77239 -12.76673 -12.74143 -12.54720 -12.17112 -12.09008 -11.95477 -11.89491 -11.73809 -11.67878 -11.52084 -11.37990 -11.12932 -10.92831 -10.89127 -10.47409 -9.84452 -8.85822 -7.74443 -5.14117 1.50304 1.51056 1.59050 1.78391 2.41162 2.51741 3.39135 3.44747 3.82580 3.88927 4.01739 4.03424 4.10534 4.27848 4.32386 4.45168 4.48271 4.50247 4.62410 4.64160 4.69848 4.74739 4.77196 4.84009 4.86252 4.91456 4.94890 5.09468 5.15982 5.17052 5.18340 5.21312 5.25850 5.35292 5.39039 5.52176 5.54664 5.60720 5.64955 5.78409 5.91149 6.26279 6.74958 7.07076 7.41225 7.73755 8.59935 9.33208 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.018411 B = 0.004613 C = 0.003960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.504962 B = 6068.646204 C = 7068.976941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.116 4.116 3 C -0.073 4.073 4 H 0.053 0.947 5 C -0.148 4.148 6 C -0.133 4.133 7 C 0.505 3.495 8 O -0.582 6.582 9 N -0.709 5.709 10 C 0.141 3.859 11 H 0.082 0.918 12 C -0.132 4.132 13 C 0.142 3.858 14 H 0.113 0.887 15 C -0.133 4.133 16 C -0.119 4.119 17 C 0.127 3.873 18 H 0.105 0.895 19 N -0.610 5.610 20 C -0.213 4.213 21 H 0.086 0.914 22 C -0.068 4.068 23 N -0.949 5.949 24 Si 0.974 3.026 25 H -0.289 1.289 26 H -0.303 1.303 27 H -0.271 1.271 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.046 0.954 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.046 0.954 36 H 0.113 0.887 37 H 0.100 0.900 38 H 0.405 0.595 39 H 0.031 0.969 40 H 0.061 0.939 41 H 0.038 0.962 42 H 0.069 0.931 43 H 0.059 0.941 44 H 0.080 0.920 45 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.464 -5.158 9.931 16.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.153 4.153 3 C -0.092 4.092 4 H 0.072 0.928 5 C -0.206 4.206 6 C -0.172 4.172 7 C 0.294 3.706 8 O -0.463 6.463 9 N -0.358 5.358 10 C 0.034 3.966 11 H 0.100 0.900 12 C -0.173 4.173 13 C 0.035 3.965 14 H 0.130 0.870 15 C -0.172 4.172 16 C -0.159 4.159 17 C 0.020 3.980 18 H 0.123 0.877 19 N -0.331 5.331 20 C -0.342 4.342 21 H 0.104 0.896 22 C -0.260 4.260 23 N -0.599 5.599 24 Si 0.804 3.196 25 H -0.217 1.217 26 H -0.230 1.230 27 H -0.196 1.196 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.065 0.935 36 H 0.132 0.868 37 H 0.118 0.882 38 H 0.240 0.760 39 H 0.050 0.950 40 H 0.080 0.920 41 H 0.057 0.943 42 H 0.087 0.913 43 H 0.078 0.922 44 H 0.099 0.901 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -11.796 -4.676 9.778 16.019 hybrid contribution 1.166 -0.631 -0.858 1.579 sum -10.630 -5.307 8.920 14.857 Atomic orbital electron populations 1.21810 0.95427 1.02014 1.01786 1.21565 0.96407 0.94661 1.02691 1.20869 0.92597 0.96950 0.98772 0.92845 1.21924 1.01398 1.00742 0.96492 1.21810 0.97789 0.92086 1.05542 1.21301 0.81805 0.92659 0.74872 1.90608 1.55323 1.48060 1.52266 1.46069 1.07545 1.09312 1.72917 1.22351 0.95624 0.82876 0.95756 0.89989 1.23304 0.98599 0.99239 0.96139 1.23508 0.88656 0.86936 0.97381 0.86980 1.22967 0.99781 0.98076 0.96368 1.22814 1.01188 0.95767 0.96135 1.23424 0.89471 0.95148 0.89968 0.87746 1.46795 1.44203 1.37528 1.04606 1.19370 1.12342 1.08374 0.94131 0.89581 1.25428 1.02785 1.01904 0.95916 1.69752 1.47221 1.42098 1.00858 0.85124 0.78756 0.78533 0.77172 1.21685 1.22966 1.19572 0.91745 0.92346 0.93447 0.90740 0.91649 0.92163 0.92167 0.93460 0.86849 0.88156 0.75974 0.94970 0.92006 0.94327 0.91263 0.92191 0.90142 0.94605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 9.67 71.98 0.70 -1.67 16 2 C -0.12 -1.92 5.40 30.59 0.17 -1.75 16 3 C -0.07 -1.60 2.04 -10.79 -0.02 -1.62 16 4 H 0.05 1.42 7.95 -2.39 -0.02 1.40 16 5 C -0.15 -3.30 8.69 71.98 0.63 -2.68 16 6 C -0.13 -3.00 5.17 29.84 0.15 -2.85 16 7 C 0.51 15.88 7.55 87.65 0.66 16.54 16 8 O -0.58 -21.99 13.65 -3.06 -0.04 -22.03 16 9 N -0.71 -23.21 5.08 -434.92 -2.21 -25.42 16 10 C 0.14 5.07 2.75 46.61 0.13 5.20 16 11 H 0.08 2.92 7.30 -2.39 -0.02 2.90 16 12 C -0.13 -5.46 6.22 32.21 0.20 -5.26 16 13 C 0.14 6.55 4.69 46.23 0.22 6.76 16 14 H 0.11 6.13 5.58 -2.39 -0.01 6.12 16 15 C -0.13 -5.16 6.44 32.22 0.21 -4.95 16 16 C -0.12 -4.06 6.43 32.19 0.21 -3.85 16 17 C 0.13 4.67 5.08 46.11 0.23 4.90 16 18 H 0.10 3.49 8.14 -2.38 -0.02 3.47 16 19 N -0.61 -28.47 2.99 -614.33 -1.84 -30.30 16 20 C -0.21 -10.98 10.59 84.03 0.89 -10.09 16 21 H 0.09 4.18 7.83 -2.91 -0.02 4.15 16 22 C -0.07 -3.66 5.50 84.86 0.47 -3.19 16 23 N -0.95 -54.73 10.48 21.65 0.23 -54.51 16 24 Si 0.97 44.05 29.55 68.60 2.03 46.07 16 25 H -0.29 -12.92 7.11 99.48 0.71 -12.22 16 26 H -0.30 -14.12 7.11 99.48 0.71 -13.42 16 27 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 28 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.06 0.88 6.57 -2.39 -0.02 0.86 16 30 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.06 1.04 8.14 -2.39 -0.02 1.03 16 33 H 0.06 1.20 6.56 -2.39 -0.02 1.19 16 34 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.05 1.34 5.95 -2.39 -0.01 1.32 16 36 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 38 H 0.41 12.70 8.64 -92.71 -0.80 11.90 16 39 H 0.03 1.46 7.98 -2.38 -0.02 1.44 16 40 H 0.06 2.38 7.82 -2.39 -0.02 2.37 16 41 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.07 2.37 7.82 -2.39 -0.02 2.35 16 43 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 44 H 0.08 2.30 7.83 -2.39 -0.02 2.28 16 45 H 0.24 13.91 8.31 -92.71 -0.77 13.14 16 Total: -1.00 -63.02 346.86 3.16 -59.87 By element: Atomic # 1 Polarization: 30.68 SS G_CDS: 0.16 Total: 30.84 kcal Atomic # 6 Polarization: -9.35 SS G_CDS: 4.83 Total: -4.52 kcal Atomic # 7 Polarization: -106.41 SS G_CDS: -3.82 Total: -110.23 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: -0.04 Total: -22.03 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.07 kcal Total: -63.02 3.16 -59.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110491635.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.487 kcal (2) G-P(sol) polarization free energy of solvation -63.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds