Wall clock time and date at job start Tue Mar 31 2020 03:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47552 * 2 1 4 4 H 1.08999 * 109.47187 * 54.99880 * 3 2 1 5 5 C 1.53002 * 109.46838 * 295.00574 * 3 2 1 6 6 C 1.50697 * 109.47539 * 175.00535 * 3 2 1 7 7 O 1.21283 * 119.99956 * 359.97438 * 6 3 2 8 8 N 1.34776 * 120.00125 * 180.02562 * 6 3 2 9 9 C 1.46501 * 119.99784 * 179.97438 * 8 6 3 10 10 C 1.54321 * 111.69319 * 298.98432 * 9 8 6 11 11 C 1.55055 * 104.06438 * 262.85352 * 10 9 8 12 12 C 1.55049 * 102.11184 * 319.87985 * 11 10 9 13 13 C 1.54322 * 103.93993 * 40.05786 * 12 11 10 14 14 H 1.08998 * 111.69996 * 98.06441 * 13 12 11 15 15 C 1.53781 * 109.06240 * 222.03481 * 13 12 11 16 16 N 1.47212 * 106.38381 * 94.87434 * 15 13 12 17 17 C 1.36935 * 126.70248 * 211.25586 * 16 15 13 18 18 H 1.07996 * 120.00367 * 14.10920 * 17 16 15 19 19 C 1.38817 * 119.99505 * 194.11259 * 17 16 15 20 20 N 1.31618 * 120.00104 * 8.95024 * 19 17 16 21 21 Si 1.86806 * 119.99409 * 188.95309 * 19 17 16 22 22 H 1.48492 * 109.46941 * 94.98448 * 21 19 17 23 23 H 1.48502 * 109.46744 * 214.97993 * 21 19 17 24 24 H 1.48496 * 109.47343 * 334.97797 * 21 19 17 25 25 C 1.47211 * 106.59155 * 31.28996 * 16 15 13 26 26 H 1.09000 * 109.46851 * 299.99750 * 1 2 3 27 27 H 1.08996 * 109.47149 * 60.00007 * 1 2 3 28 28 H 1.09005 * 109.47012 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47031 * 239.99527 * 2 1 3 30 30 H 1.09007 * 109.47214 * 120.00503 * 2 1 3 31 31 H 1.09003 * 109.47229 * 180.02562 * 5 3 2 32 32 H 1.09000 * 109.47000 * 299.99201 * 5 3 2 33 33 H 1.09000 * 109.47589 * 59.99326 * 5 3 2 34 34 H 0.96999 * 119.99784 * 359.97438 * 8 6 3 35 35 H 1.08995 * 110.53218 * 144.17180 * 10 9 8 36 36 H 1.09003 * 110.53394 * 21.54136 * 10 9 8 37 37 H 1.08999 * 110.90354 * 78.08194 * 11 10 9 38 38 H 1.08993 * 110.90791 * 201.64083 * 11 10 9 39 39 H 1.09005 * 110.53788 * 158.66727 * 12 11 10 40 40 H 1.09000 * 110.53497 * 281.44269 * 12 11 10 41 41 H 1.09001 * 110.07425 * 214.10689 * 15 13 12 42 42 H 1.09004 * 110.06936 * 335.64660 * 15 13 12 43 43 H 0.96999 * 119.99325 * 180.02562 * 20 19 17 44 44 H 1.09003 * 110.07658 * 87.94603 * 25 16 15 45 45 H 1.09000 * 110.07811 * 209.43110 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 1.6352 2.1265 -1.3073 6 6 3.5420 1.4442 0.1237 7 8 4.1450 0.3950 0.2044 8 7 4.2149 2.6117 0.1456 9 6 5.6750 2.6134 0.2665 10 6 6.1391 1.9556 1.5830 11 6 6.3728 3.1527 2.5404 12 6 7.0344 4.1951 1.6025 13 6 6.2518 4.0548 0.2799 14 1 5.4756 4.8146 0.1883 15 6 7.2405 4.1069 -0.8968 16 7 7.5632 2.7098 -1.2301 17 6 8.7468 2.2413 -1.7348 18 1 9.6275 2.8661 -1.7148 19 6 8.8147 0.9631 -2.2720 20 7 7.7125 0.2683 -2.4587 21 14 10.4704 0.2292 -2.7299 22 1 10.9723 -0.6001 -1.6051 23 1 10.3186 -0.6179 -3.9402 24 1 11.4362 1.3221 -3.0087 25 6 6.3646 1.9150 -0.9158 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.9990 3.1540 -1.3076 32 1 2.0698 1.5875 -2.1492 33 1 0.5489 2.1252 -1.3969 34 1 3.7326 3.4508 0.0815 35 1 7.0659 1.4033 1.4284 36 1 5.3640 1.2975 1.9757 37 1 5.4273 3.5273 2.9326 38 1 7.0459 2.8763 3.3518 39 1 6.9220 5.2005 2.0084 40 1 8.0875 3.9586 1.4505 41 1 6.7780 4.5985 -1.7526 42 1 8.1447 4.6397 -0.6022 43 1 7.7601 -0.6250 -2.8338 44 1 5.6958 1.8903 -1.7761 45 1 6.6508 0.9012 -0.6356 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001111592904.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:09:06 Heat of formation + Delta-G solvation = -30.862149 kcal Electronic energy + Delta-G solvation = -23731.116473 eV Core-core repulsion = 20555.255554 eV Total energy + Delta-G solvation = -3175.860920 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.13677 -38.34487 -35.17786 -34.30336 -33.24999 -31.48637 -29.93904 -28.94655 -27.67155 -25.21451 -24.63792 -24.23769 -21.94030 -20.56843 -20.38332 -18.95218 -18.68270 -16.96914 -16.50139 -15.73348 -15.25086 -14.66170 -14.48558 -14.25273 -13.74754 -13.57173 -13.44273 -13.26865 -13.17132 -12.62505 -12.30280 -12.19921 -11.89558 -11.61811 -11.47696 -11.15608 -10.89633 -10.87017 -10.77564 -10.63759 -10.62276 -10.51469 -10.46251 -10.26023 -10.07327 -9.92272 -9.84250 -9.65285 -9.06543 -8.51896 -8.37438 -6.73764 -5.67162 -3.03245 3.16802 3.43938 3.48634 3.51345 3.62786 4.54534 4.81219 4.84786 4.99546 5.01134 5.13280 5.31131 5.36425 5.42446 5.50567 5.54721 5.61529 5.65720 5.80713 5.85187 5.91019 5.93569 5.99268 6.04837 6.09842 6.10295 6.13096 6.19492 6.31981 6.36112 6.39748 6.44157 6.58473 6.69744 6.77678 6.86403 6.90650 7.19119 7.52996 7.71705 7.90746 8.08133 8.35690 8.80534 9.24118 9.86290 10.58101 11.44879 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.016450 B = 0.005973 C = 0.004936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.758905 B = 4686.789393 C = 5671.004795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.106 4.106 3 C -0.110 4.110 4 H 0.089 0.911 5 C -0.144 4.144 6 C 0.511 3.489 7 O -0.522 6.522 8 N -0.713 5.713 9 C 0.148 3.852 10 C -0.111 4.111 11 C -0.124 4.124 12 C -0.111 4.111 13 C -0.108 4.108 14 H 0.073 0.927 15 C 0.136 3.864 16 N -0.592 5.592 17 C -0.234 4.234 18 H 0.076 0.924 19 C -0.002 4.002 20 N -0.907 5.907 21 Si 0.908 3.092 22 H -0.288 1.288 23 H -0.291 1.291 24 H -0.280 1.280 25 C 0.179 3.821 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.390 0.610 35 H 0.079 0.921 36 H 0.063 0.937 37 H 0.056 0.944 38 H 0.059 0.941 39 H 0.056 0.944 40 H 0.074 0.926 41 H 0.013 0.987 42 H 0.045 0.955 43 H 0.253 0.747 44 H 0.017 0.983 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.703 6.684 7.666 16.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.144 4.144 3 C -0.131 4.131 4 H 0.107 0.893 5 C -0.202 4.202 6 C 0.296 3.704 7 O -0.397 6.397 8 N -0.364 5.364 9 C 0.061 3.939 10 C -0.149 4.149 11 C -0.162 4.162 12 C -0.149 4.149 13 C -0.128 4.128 14 H 0.092 0.908 15 C 0.009 3.991 16 N -0.317 5.317 17 C -0.363 4.363 18 H 0.094 0.906 19 C -0.200 4.200 20 N -0.552 5.552 21 Si 0.739 3.261 22 H -0.216 1.216 23 H -0.218 1.218 24 H -0.206 1.206 25 C 0.052 3.948 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.224 0.776 35 H 0.097 0.903 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.092 0.908 41 H 0.030 0.970 42 H 0.063 0.937 43 H 0.064 0.936 44 H 0.035 0.965 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -12.143 5.704 7.587 15.413 hybrid contribution 0.510 0.088 -0.391 0.649 sum -11.633 5.792 7.196 14.854 Atomic orbital electron populations 1.21840 0.95927 1.01602 1.01549 1.21328 0.94800 0.94552 1.03694 1.21331 0.92792 0.99018 0.99970 0.89256 1.21815 1.01633 1.00302 0.96446 1.20514 0.89399 0.84052 0.76438 1.90751 1.69871 1.31118 1.47940 1.45984 1.07278 1.07984 1.75122 1.22035 0.78279 0.95419 0.98146 1.22646 1.01831 0.96706 0.93749 1.22591 0.99497 0.96578 0.97525 1.22448 1.00209 0.97899 0.94296 1.22890 0.97822 0.95232 0.96858 0.90846 1.21390 0.95282 0.89171 0.93284 1.44402 1.12272 1.00432 1.74589 1.18967 0.85880 0.98608 1.32803 0.90637 1.24898 0.97029 0.98184 0.99923 1.69970 1.25053 1.11810 1.48414 0.86165 0.83236 0.79059 0.77679 1.21561 1.21762 1.20573 1.21302 0.86749 0.96036 0.90693 0.93002 0.92557 0.92696 0.91115 0.91232 0.92360 0.91792 0.91675 0.77606 0.90266 0.91784 0.92478 0.92193 0.92542 0.90758 0.96962 0.93667 0.93626 0.96528 0.89539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.67 37.16 0.36 -1.07 16 2 C -0.11 -1.33 4.75 -26.73 -0.13 -1.46 16 3 C -0.11 -1.36 2.72 -91.77 -0.25 -1.61 16 4 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 5 C -0.14 -1.58 8.84 37.16 0.33 -1.25 16 6 C 0.51 8.74 6.47 -10.99 -0.07 8.66 16 7 O -0.52 -11.42 13.92 5.56 0.08 -11.34 16 8 N -0.71 -11.51 5.12 -45.55 -0.23 -11.75 16 9 C 0.15 2.86 0.93 -129.59 -0.12 2.74 16 10 C -0.11 -2.11 5.50 -24.95 -0.14 -2.25 16 11 C -0.12 -1.89 6.92 -24.56 -0.17 -2.06 16 12 C -0.11 -1.71 6.23 -24.96 -0.16 -1.87 16 13 C -0.11 -1.85 3.67 -88.32 -0.32 -2.17 16 14 H 0.07 1.06 7.76 -51.93 -0.40 0.65 16 15 C 0.14 2.83 6.57 -3.25 -0.02 2.81 16 16 N -0.59 -15.41 3.39 -171.21 -0.58 -15.99 16 17 C -0.23 -6.65 10.28 -15.06 -0.15 -6.81 16 18 H 0.08 2.06 7.84 -52.49 -0.41 1.65 16 19 C 0.00 -0.07 5.39 -17.43 -0.09 -0.17 16 20 N -0.91 -27.89 10.84 55.49 0.60 -27.29 16 21 Si 0.91 22.61 29.56 -169.99 -5.03 17.58 16 22 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 23 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 C 0.18 4.54 3.72 -3.31 -0.01 4.53 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.49 6.56 -51.93 -0.34 0.14 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 30 H 0.07 0.95 7.96 -51.93 -0.41 0.54 16 31 H 0.06 0.58 7.56 -51.93 -0.39 0.19 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.06 0.57 6.56 -51.93 -0.34 0.23 16 34 H 0.39 4.97 7.75 -40.82 -0.32 4.65 16 35 H 0.08 1.75 7.56 -51.93 -0.39 1.36 16 36 H 0.06 1.25 6.64 -51.93 -0.34 0.90 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.07 1.28 7.56 -51.93 -0.39 0.89 16 41 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 42 H 0.05 0.90 7.58 -51.93 -0.39 0.51 16 43 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 44 H 0.02 0.48 8.08 -51.93 -0.42 0.06 16 45 H 0.09 2.57 6.19 -51.93 -0.32 2.25 16 LS Contribution 343.00 15.07 5.17 5.17 Total: -1.00 -33.08 343.00 -8.76 -41.84 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -7.82 Total: 3.75 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: -0.95 Total: -1.96 kcal Atomic # 7 Polarization: -54.82 SS G_CDS: -0.21 Total: -55.03 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.08 Total: -11.34 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.03 Total: 17.58 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.08 -8.76 -41.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111592904.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.983 kcal (2) G-P(sol) polarization free energy of solvation -33.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds