Wall clock time and date at job start Tue Mar 31 2020 03:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47552 * 2 1 4 4 H 1.08999 * 109.47187 * 54.99880 * 3 2 1 5 5 C 1.53002 * 109.46838 * 295.00574 * 3 2 1 6 6 C 1.50697 * 109.47539 * 175.00535 * 3 2 1 7 7 O 1.21283 * 119.99956 * 359.97438 * 6 3 2 8 8 N 1.34776 * 120.00125 * 180.02562 * 6 3 2 9 9 C 1.46501 * 119.99784 * 179.97438 * 8 6 3 10 10 C 1.54321 * 111.69319 * 298.98432 * 9 8 6 11 11 C 1.55055 * 104.06438 * 262.85352 * 10 9 8 12 12 C 1.55049 * 102.11184 * 319.87985 * 11 10 9 13 13 C 1.54322 * 103.93993 * 40.05786 * 12 11 10 14 14 H 1.08998 * 111.69996 * 98.06441 * 13 12 11 15 15 C 1.53781 * 109.06240 * 222.03481 * 13 12 11 16 16 N 1.47212 * 106.38381 * 94.87434 * 15 13 12 17 17 C 1.36935 * 126.70248 * 211.25586 * 16 15 13 18 18 H 1.07996 * 120.00367 * 14.10920 * 17 16 15 19 19 C 1.38817 * 119.99505 * 194.11259 * 17 16 15 20 20 N 1.31618 * 120.00104 * 8.95024 * 19 17 16 21 21 Si 1.86806 * 119.99409 * 188.95309 * 19 17 16 22 22 H 1.48492 * 109.46941 * 94.98448 * 21 19 17 23 23 H 1.48502 * 109.46744 * 214.97993 * 21 19 17 24 24 H 1.48496 * 109.47343 * 334.97797 * 21 19 17 25 25 C 1.47211 * 106.59155 * 31.28996 * 16 15 13 26 26 H 1.09000 * 109.46851 * 299.99750 * 1 2 3 27 27 H 1.08996 * 109.47149 * 60.00007 * 1 2 3 28 28 H 1.09005 * 109.47012 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47031 * 239.99527 * 2 1 3 30 30 H 1.09007 * 109.47214 * 120.00503 * 2 1 3 31 31 H 1.09003 * 109.47229 * 180.02562 * 5 3 2 32 32 H 1.09000 * 109.47000 * 299.99201 * 5 3 2 33 33 H 1.09000 * 109.47589 * 59.99326 * 5 3 2 34 34 H 0.96999 * 119.99784 * 359.97438 * 8 6 3 35 35 H 1.08995 * 110.53218 * 144.17180 * 10 9 8 36 36 H 1.09003 * 110.53394 * 21.54136 * 10 9 8 37 37 H 1.08999 * 110.90354 * 78.08194 * 11 10 9 38 38 H 1.08993 * 110.90791 * 201.64083 * 11 10 9 39 39 H 1.09005 * 110.53788 * 158.66727 * 12 11 10 40 40 H 1.09000 * 110.53497 * 281.44269 * 12 11 10 41 41 H 1.09001 * 110.07425 * 214.10689 * 15 13 12 42 42 H 1.09004 * 110.06936 * 335.64660 * 15 13 12 43 43 H 0.96999 * 119.99325 * 180.02562 * 20 19 17 44 44 H 1.09003 * 110.07658 * 87.94603 * 25 16 15 45 45 H 1.09000 * 110.07811 * 209.43110 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 1.6352 2.1265 -1.3073 6 6 3.5420 1.4442 0.1237 7 8 4.1450 0.3950 0.2044 8 7 4.2149 2.6117 0.1456 9 6 5.6750 2.6134 0.2665 10 6 6.1391 1.9556 1.5830 11 6 6.3728 3.1527 2.5404 12 6 7.0344 4.1951 1.6025 13 6 6.2518 4.0548 0.2799 14 1 5.4756 4.8146 0.1883 15 6 7.2405 4.1069 -0.8968 16 7 7.5632 2.7098 -1.2301 17 6 8.7468 2.2413 -1.7348 18 1 9.6275 2.8661 -1.7148 19 6 8.8147 0.9631 -2.2720 20 7 7.7125 0.2683 -2.4587 21 14 10.4704 0.2292 -2.7299 22 1 10.9723 -0.6001 -1.6051 23 1 10.3186 -0.6179 -3.9402 24 1 11.4362 1.3221 -3.0087 25 6 6.3646 1.9150 -0.9158 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.9990 3.1540 -1.3076 32 1 2.0698 1.5875 -2.1492 33 1 0.5489 2.1252 -1.3969 34 1 3.7326 3.4508 0.0815 35 1 7.0659 1.4033 1.4284 36 1 5.3640 1.2975 1.9757 37 1 5.4273 3.5273 2.9326 38 1 7.0459 2.8763 3.3518 39 1 6.9220 5.2005 2.0084 40 1 8.0875 3.9586 1.4505 41 1 6.7780 4.5985 -1.7526 42 1 8.1447 4.6397 -0.6022 43 1 7.7601 -0.6250 -2.8338 44 1 5.6958 1.8903 -1.7761 45 1 6.6508 0.9012 -0.6356 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001111592904.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:09:05 Heat of formation + Delta-G solvation = -53.436690 kcal Electronic energy + Delta-G solvation = -23732.095379 eV Core-core repulsion = 20555.255554 eV Total energy + Delta-G solvation = -3176.839825 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.62985 -39.80971 -36.35894 -36.12868 -34.67476 -33.49804 -31.13532 -30.41554 -29.37413 -26.49580 -26.29837 -25.85608 -23.24959 -22.30131 -21.69706 -20.28863 -20.20787 -18.87301 -18.01159 -17.31492 -16.49505 -16.36887 -15.97254 -15.60063 -15.42182 -15.12377 -14.87642 -14.69727 -14.39074 -14.32760 -13.68743 -13.53771 -13.08051 -12.90543 -12.85280 -12.69987 -12.52205 -12.48229 -12.35790 -12.10549 -12.02300 -11.94182 -11.70844 -11.66403 -11.59472 -11.56448 -11.53826 -11.43923 -10.69962 -10.49728 -9.92413 -8.88248 -7.89963 -5.28352 1.40276 1.43605 1.52650 1.80395 2.28249 2.47499 3.28401 3.44935 3.68483 3.78288 3.83368 3.91480 3.96638 4.03179 4.40617 4.43196 4.44373 4.51023 4.55526 4.63207 4.63922 4.70366 4.75526 4.78862 4.96503 4.99473 5.01729 5.04991 5.09625 5.11892 5.14856 5.22900 5.28909 5.30227 5.39623 5.41964 5.45808 5.52098 5.56801 5.69948 5.88281 6.19657 6.75377 7.01709 7.48709 7.73268 8.43709 9.21207 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.016450 B = 0.005973 C = 0.004936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.758905 B = 4686.789393 C = 5671.004795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.107 4.107 3 C -0.098 4.098 4 H 0.129 0.871 5 C -0.141 4.141 6 C 0.501 3.499 7 O -0.581 6.581 8 N -0.699 5.699 9 C 0.156 3.844 10 C -0.110 4.110 11 C -0.109 4.109 12 C -0.105 4.105 13 C -0.094 4.094 14 H 0.120 0.880 15 C 0.127 3.873 16 N -0.616 5.616 17 C -0.242 4.242 18 H 0.086 0.914 19 C -0.067 4.067 20 N -0.947 5.947 21 Si 0.977 3.023 22 H -0.289 1.289 23 H -0.296 1.296 24 H -0.259 1.259 25 C 0.198 3.802 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.056 0.944 29 H 0.038 0.962 30 H 0.050 0.950 31 H 0.073 0.927 32 H 0.032 0.968 33 H 0.097 0.903 34 H 0.413 0.587 35 H 0.032 0.968 36 H 0.053 0.947 37 H 0.089 0.911 38 H 0.071 0.929 39 H 0.101 0.899 40 H 0.050 0.950 41 H 0.014 0.986 42 H 0.058 0.942 43 H 0.244 0.756 44 H -0.030 1.030 45 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.211 10.195 9.434 19.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.145 4.145 3 C -0.119 4.119 4 H 0.147 0.853 5 C -0.198 4.198 6 C 0.289 3.711 7 O -0.460 6.460 8 N -0.352 5.352 9 C 0.068 3.932 10 C -0.148 4.148 11 C -0.146 4.146 12 C -0.142 4.142 13 C -0.114 4.114 14 H 0.137 0.863 15 C 0.002 3.998 16 N -0.340 5.340 17 C -0.371 4.371 18 H 0.104 0.896 19 C -0.260 4.260 20 N -0.595 5.595 21 Si 0.805 3.195 22 H -0.216 1.216 23 H -0.223 1.223 24 H -0.183 1.183 25 C 0.071 3.929 26 H 0.090 0.910 27 H 0.087 0.913 28 H 0.075 0.925 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.051 0.949 33 H 0.115 0.885 34 H 0.251 0.749 35 H 0.051 0.949 36 H 0.071 0.929 37 H 0.107 0.893 38 H 0.090 0.910 39 H 0.119 0.881 40 H 0.069 0.931 41 H 0.032 0.968 42 H 0.076 0.924 43 H 0.053 0.947 44 H -0.012 1.012 45 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -13.670 9.302 9.368 19.004 hybrid contribution 0.987 -1.017 -0.984 1.726 sum -12.683 8.284 8.384 17.314 Atomic orbital electron populations 1.21784 0.92720 1.02396 1.03115 1.21321 0.97460 0.94446 1.01314 1.21379 0.88732 0.99465 1.02354 0.85300 1.21835 1.03545 1.00347 0.94120 1.21547 0.91573 0.83248 0.74764 1.90741 1.71520 1.33309 1.50402 1.45806 1.05883 1.09046 1.74426 1.21678 0.79886 0.96512 0.95170 1.22506 0.99172 0.98136 0.95034 1.22551 1.01381 0.94037 0.96666 1.22430 0.98401 1.00275 0.93138 1.22907 0.98001 0.94270 0.96187 0.86258 1.21673 0.97030 0.86244 0.94857 1.44695 1.11735 1.03102 1.74514 1.19442 0.87279 0.98827 1.31548 0.89610 1.25810 1.00574 0.98882 1.00780 1.70236 1.27522 1.11607 1.50120 0.85081 0.79239 0.78399 0.76788 1.21639 1.22293 1.18260 1.20889 0.86380 0.94371 0.91303 0.90967 0.91271 0.92476 0.94303 0.93081 0.90774 0.94873 0.88469 0.74915 0.94941 0.92863 0.89255 0.91047 0.88061 0.93122 0.96769 0.92403 0.94727 1.01225 0.95240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 9.67 71.98 0.70 -1.68 16 2 C -0.11 -2.72 4.75 30.59 0.15 -2.57 16 3 C -0.10 -2.29 2.72 -11.54 -0.03 -2.32 16 4 H 0.13 2.07 8.14 -2.39 -0.02 2.05 16 5 C -0.14 -2.80 8.84 71.98 0.64 -2.16 16 6 C 0.50 17.45 6.47 87.66 0.57 18.02 16 7 O -0.58 -27.42 13.92 -3.04 -0.04 -27.46 16 8 N -0.70 -21.89 5.12 -416.41 -2.13 -24.02 16 9 C 0.16 6.04 0.93 5.05 0.00 6.05 16 10 C -0.11 -4.27 5.50 31.75 0.17 -4.09 16 11 C -0.11 -2.97 6.92 32.00 0.22 -2.75 16 12 C -0.10 -2.84 6.23 31.74 0.20 -2.64 16 13 C -0.09 -2.95 3.67 -9.31 -0.03 -2.98 16 14 H 0.12 2.73 7.76 -2.39 -0.02 2.71 16 15 C 0.13 5.19 6.57 86.51 0.57 5.75 16 16 N -0.62 -33.20 3.39 -695.58 -2.36 -35.56 16 17 C -0.24 -14.20 10.28 84.03 0.86 -13.33 16 18 H 0.09 4.73 7.84 -2.91 -0.02 4.70 16 19 C -0.07 -4.06 5.39 84.86 0.46 -3.61 16 20 N -0.95 -62.54 10.84 21.65 0.23 -62.30 16 21 Si 0.98 48.34 29.56 68.60 2.03 50.37 16 22 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 23 H -0.30 -14.76 7.11 99.48 0.71 -14.06 16 24 H -0.26 -11.74 7.11 99.48 0.71 -11.04 16 25 C 0.20 10.72 3.72 86.47 0.32 11.04 16 26 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.07 0.98 6.56 -2.39 -0.02 0.97 16 28 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 29 H 0.04 1.20 8.14 -2.38 -0.02 1.18 16 30 H 0.05 1.46 7.96 -2.38 -0.02 1.44 16 31 H 0.07 1.23 7.56 -2.39 -0.02 1.22 16 32 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.10 1.34 6.56 -2.39 -0.02 1.32 16 34 H 0.41 9.06 7.75 -92.71 -0.72 8.34 16 35 H 0.03 1.53 7.56 -2.39 -0.02 1.51 16 36 H 0.05 2.15 6.64 -2.39 -0.02 2.13 16 37 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.10 1.95 8.14 -2.38 -0.02 1.93 16 40 H 0.05 1.63 7.56 -2.39 -0.02 1.61 16 41 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 42 H 0.06 2.20 7.58 -2.38 -0.02 2.19 16 43 H 0.24 15.78 8.31 -92.71 -0.77 15.01 16 44 H -0.03 -1.86 8.08 -2.39 -0.02 -1.88 16 45 H 0.03 1.91 6.19 -2.39 -0.01 1.89 16 Total: -1.00 -82.35 343.00 2.77 -79.58 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: 0.24 Total: 16.67 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: 4.79 Total: 2.73 kcal Atomic # 7 Polarization: -117.63 SS G_CDS: -4.25 Total: -121.88 kcal Atomic # 8 Polarization: -27.42 SS G_CDS: -0.04 Total: -27.46 kcal Atomic # 14 Polarization: 48.34 SS G_CDS: 2.03 Total: 50.37 kcal Total: -82.35 2.77 -79.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111592904.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.144 kcal (2) G-P(sol) polarization free energy of solvation -82.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds