Wall clock time and date at job start Tue Mar 31 2020 01:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47018 * 2 1 4 4 C 1.53003 * 109.46713 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.47567 * 54.99936 * 4 3 2 6 6 C 1.52999 * 109.47393 * 294.99629 * 4 3 2 7 7 C 1.53002 * 109.46930 * 174.99829 * 4 3 2 8 8 C 1.50697 * 109.47283 * 185.00018 * 7 4 3 9 9 O 1.21286 * 119.99736 * 359.97438 * 8 7 4 10 10 N 1.34777 * 120.00420 * 180.02562 * 8 7 4 11 11 C 1.46490 * 120.00403 * 179.97438 * 10 8 7 12 12 H 1.09008 * 115.51914 * 350.58644 * 11 10 8 13 13 C 1.52999 * 117.44571 * 205.16586 * 11 10 8 14 14 H 1.08999 * 119.54236 * 4.16426 * 13 11 10 15 15 C 1.54395 * 118.12519 * 159.25645 * 13 11 10 16 16 N 1.51510 * 102.93425 * 88.08153 * 15 13 11 17 17 C 1.36939 * 127.62823 * 140.53098 * 16 15 13 18 18 H 1.08001 * 120.00034 * 194.70548 * 17 16 15 19 19 C 1.38814 * 120.00406 * 14.71007 * 17 16 15 20 20 N 1.31627 * 119.99530 * 9.02260 * 19 17 16 21 21 Si 1.86797 * 120.00124 * 189.02536 * 19 17 16 22 22 H 1.48495 * 109.47279 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47056 * 119.99923 * 21 19 17 24 24 H 1.48501 * 109.46993 * 239.99525 * 21 19 17 25 25 C 1.48141 * 104.52982 * 320.25156 * 16 15 13 26 26 C 1.53005 * 117.44539 * 135.99507 * 11 10 8 27 27 H 1.09003 * 119.53488 * 355.84251 * 26 11 10 28 28 H 1.09006 * 109.47479 * 300.00377 * 1 2 3 29 29 H 1.09007 * 109.47028 * 60.00066 * 1 2 3 30 30 H 1.09002 * 109.47450 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.46971 * 239.99705 * 2 1 3 32 32 H 1.09000 * 109.46890 * 119.99618 * 2 1 3 33 33 H 1.09001 * 109.47478 * 60.00229 * 3 2 1 34 34 H 1.09000 * 109.46978 * 299.99564 * 3 2 1 35 35 H 1.09008 * 109.46669 * 60.00054 * 6 4 3 36 36 H 1.08997 * 109.47282 * 180.02562 * 6 4 3 37 37 H 1.09006 * 109.47226 * 300.00581 * 6 4 3 38 38 H 1.09001 * 109.47016 * 64.99762 * 7 4 3 39 39 H 1.08995 * 109.47376 * 305.00215 * 7 4 3 40 40 H 0.97003 * 119.99511 * 0.02562 * 10 8 7 41 41 H 1.08990 * 110.40685 * 205.97810 * 15 13 11 42 42 H 1.08997 * 110.40493 * 328.41073 * 15 13 11 43 43 H 0.96996 * 119.99361 * 180.02562 * 20 19 17 44 44 H 1.09006 * 110.40812 * 281.08317 * 25 16 15 45 45 H 1.08998 * 110.40625 * 158.65360 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9337 0.8529 -0.8409 6 6 4.0795 0.8331 1.3083 7 6 4.0801 2.8794 -0.1251 8 6 5.5820 2.8704 -0.2480 9 8 6.1851 1.8182 -0.2357 10 7 6.2552 4.0316 -0.3706 11 6 7.7152 4.0228 -0.4895 12 1 8.1952 3.0605 -0.3111 13 6 8.4665 5.2789 -0.0436 14 1 7.9145 6.1040 0.4063 15 6 9.9646 5.1454 0.3055 16 7 10.6445 5.3551 -1.0321 17 6 11.7988 6.0476 -1.2838 18 1 12.0525 6.3244 -2.2964 19 6 12.6428 6.3937 -0.2375 20 7 12.4305 5.9082 0.9674 21 14 14.0797 7.5485 -0.5394 22 1 14.0989 7.9516 -1.9685 23 1 13.9321 8.7556 0.3129 24 1 15.3498 6.8569 -0.2024 25 6 9.7850 4.6380 -2.0024 26 6 8.3425 4.9391 -1.5421 27 1 7.6978 5.5109 -2.2096 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 3.7160 -0.1907 1.3979 36 1 5.1694 0.8334 1.3089 37 1 3.7157 1.4227 2.1499 38 1 3.7913 3.4462 0.7600 39 1 3.6458 3.3429 -1.0109 40 1 5.7728 4.8732 -0.3793 41 1 10.2614 5.9227 1.0095 42 1 10.1721 4.1581 0.7182 43 1 13.0200 6.1504 1.6986 44 1 9.9804 3.5662 -1.9638 45 1 9.9497 5.0191 -3.0102 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001114014406.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:48:41 Heat of formation + Delta-G solvation = -3.269266 kcal Electronic energy + Delta-G solvation = -21625.195920 eV Core-core repulsion = 18450.531517 eV Total energy + Delta-G solvation = -3174.664403 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.97554 -38.44796 -36.80097 -34.35007 -32.94177 -32.55287 -30.26722 -28.05636 -27.12758 -26.79222 -25.51895 -22.73511 -21.60167 -20.52775 -20.36889 -19.74052 -19.19566 -16.98276 -16.81554 -16.24724 -15.78600 -15.27496 -14.71640 -14.52063 -14.07494 -13.79285 -13.63406 -13.39363 -13.19153 -12.74677 -12.49980 -12.28596 -12.17991 -11.90353 -11.72263 -11.48607 -11.43347 -11.15918 -10.99781 -10.89997 -10.83693 -10.77650 -10.64307 -10.40745 -10.16277 -10.11996 -9.70796 -9.60083 -9.18073 -8.74327 -8.30505 -6.87332 -5.78574 -3.11730 2.69128 3.17735 3.38580 3.44335 3.46861 4.32497 4.46392 4.48951 4.57525 4.64786 4.90360 4.92801 5.05809 5.17206 5.26196 5.32541 5.36229 5.40115 5.45262 5.46397 5.55008 5.57954 5.64108 5.69964 5.78074 5.80376 5.90294 5.92970 5.95403 6.05225 6.16463 6.23522 6.26824 6.43040 6.54247 6.69858 6.83447 6.90201 7.31336 7.52128 7.62597 7.70738 8.15692 8.34814 9.07314 9.73519 10.50329 11.36442 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.060943 B = 0.002552 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.338760 B =10968.898729 C =11109.574482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C -0.115 4.115 4 C -0.076 4.076 5 H 0.078 0.922 6 C -0.155 4.155 7 C -0.137 4.137 8 C 0.513 3.487 9 O -0.536 6.536 10 N -0.700 5.700 11 C 0.095 3.905 12 H 0.131 0.869 13 C -0.179 4.179 14 H 0.101 0.899 15 C 0.185 3.815 16 N -0.599 5.599 17 C -0.223 4.223 18 H 0.078 0.922 19 C -0.008 4.008 20 N -0.917 5.917 21 Si 0.913 3.087 22 H -0.279 1.279 23 H -0.290 1.290 24 H -0.290 1.290 25 C 0.158 3.842 26 C -0.183 4.183 27 H 0.102 0.898 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.053 0.947 36 H 0.076 0.924 37 H 0.046 0.954 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.398 0.602 41 H 0.092 0.908 42 H 0.031 0.969 43 H 0.254 0.746 44 H 0.026 0.974 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.596 -6.321 -1.031 23.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.153 4.153 4 C -0.095 4.095 5 H 0.096 0.904 6 C -0.212 4.212 7 C -0.177 4.177 8 C 0.300 3.700 9 O -0.413 6.413 10 N -0.349 5.349 11 C -0.011 4.011 12 H 0.148 0.852 13 C -0.200 4.200 14 H 0.119 0.881 15 C 0.060 3.940 16 N -0.323 5.323 17 C -0.351 4.351 18 H 0.095 0.905 19 C -0.205 4.205 20 N -0.563 5.563 21 Si 0.743 3.257 22 H -0.204 1.204 23 H -0.217 1.217 24 H -0.217 1.217 25 C 0.031 3.969 26 C -0.205 4.205 27 H 0.120 0.880 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.095 0.905 37 H 0.065 0.935 38 H 0.110 0.890 39 H 0.109 0.891 40 H 0.231 0.769 41 H 0.110 0.890 42 H 0.049 0.951 43 H 0.064 0.936 44 H 0.044 0.956 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -21.921 -6.975 -0.925 23.023 hybrid contribution 0.404 1.231 -0.118 1.301 sum -21.517 -5.744 -1.043 22.295 Atomic orbital electron populations 1.21784 0.96107 1.01459 1.01646 1.21575 0.95489 0.97009 1.02350 1.21684 0.94756 0.96959 1.01874 1.20902 0.94320 0.94235 1.00003 0.90357 1.22005 1.03338 1.00103 0.95755 1.21770 0.92097 0.99786 1.04046 1.20671 0.89941 0.83614 0.75763 1.90673 1.70359 1.30782 1.49446 1.45464 1.06851 1.08715 1.73871 1.21861 0.78863 0.97336 1.03022 0.85167 1.24567 0.99954 0.97458 0.98010 0.88119 1.21649 0.82820 1.00330 0.89166 1.46010 1.25117 1.59283 1.01904 1.19062 0.95515 1.26775 0.93794 0.90474 1.24884 0.98453 1.01035 0.96153 1.69899 1.39688 1.46411 1.00346 0.86038 0.81977 0.80256 0.77435 1.20407 1.21684 1.21718 1.21061 0.86862 0.95137 0.93807 1.24350 0.99340 1.03988 0.92784 0.88010 0.92861 0.92879 0.92922 0.92016 0.91643 0.91975 0.92068 0.92803 0.90533 0.93476 0.89009 0.89083 0.76857 0.88985 0.95055 0.93630 0.95640 0.93034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.91 37.16 0.37 -0.57 16 2 C -0.13 -0.91 5.69 -26.73 -0.15 -1.06 16 3 C -0.12 -0.84 4.68 -26.73 -0.13 -0.96 16 4 C -0.08 -0.71 2.04 -90.62 -0.18 -0.90 16 5 H 0.08 0.86 7.95 -51.93 -0.41 0.45 16 6 C -0.15 -1.61 8.69 37.16 0.32 -1.29 16 7 C -0.14 -1.23 5.17 -27.88 -0.14 -1.38 16 8 C 0.51 6.85 7.55 -10.99 -0.08 6.77 16 9 O -0.54 -9.26 13.53 5.55 0.08 -9.19 16 10 N -0.70 -9.20 5.56 -53.81 -0.30 -9.50 16 11 C 0.10 1.61 5.97 -67.93 -0.41 1.20 16 12 H 0.13 2.52 7.40 -51.92 -0.38 2.14 16 13 C -0.18 -3.37 6.96 -89.29 -0.62 -3.99 16 14 H 0.10 1.73 8.14 -51.93 -0.42 1.30 16 15 C 0.19 4.46 5.91 -0.48 0.00 4.46 16 16 N -0.60 -15.48 3.44 -165.99 -0.57 -16.05 16 17 C -0.22 -6.26 10.36 -15.06 -0.16 -6.41 16 18 H 0.08 2.09 7.84 -52.49 -0.41 1.68 16 19 C -0.01 -0.24 5.42 -17.43 -0.09 -0.33 16 20 N -0.92 -26.96 10.82 55.49 0.60 -26.36 16 21 Si 0.91 22.02 29.56 -169.99 -5.03 17.00 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 25 C 0.16 3.39 7.05 -2.41 -0.02 3.37 16 26 C -0.18 -3.29 7.05 -89.29 -0.63 -3.92 16 27 H 0.10 1.63 8.14 -51.93 -0.42 1.21 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.05 0.31 8.14 -51.92 -0.42 -0.11 16 30 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.48 6.56 -51.93 -0.34 0.14 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.05 0.51 6.56 -51.92 -0.34 0.17 16 36 H 0.08 1.02 5.95 -51.93 -0.31 0.71 16 37 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.40 4.04 8.83 -40.82 -0.36 3.68 16 41 H 0.09 2.45 6.56 -51.93 -0.34 2.11 16 42 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 43 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 44 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 356.67 15.07 5.37 5.37 Total: -1.00 -31.62 356.67 -9.73 -41.35 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -7.95 Total: 2.39 kcal Atomic # 6 Polarization: -3.09 SS G_CDS: -1.93 Total: -5.01 kcal Atomic # 7 Polarization: -51.65 SS G_CDS: -0.27 Total: -51.92 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: 0.08 Total: -9.19 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.03 Total: 17.00 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.62 -9.73 -41.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114014406.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.079 kcal (2) G-P(sol) polarization free energy of solvation -31.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds