Wall clock time and date at job start Tue Mar 31 2020 01:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47018 * 2 1 4 4 C 1.53003 * 109.46713 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.47567 * 54.99936 * 4 3 2 6 6 C 1.52999 * 109.47393 * 294.99629 * 4 3 2 7 7 C 1.53002 * 109.46930 * 174.99829 * 4 3 2 8 8 C 1.50697 * 109.47283 * 185.00018 * 7 4 3 9 9 O 1.21286 * 119.99736 * 359.97438 * 8 7 4 10 10 N 1.34777 * 120.00420 * 180.02562 * 8 7 4 11 11 C 1.46490 * 120.00403 * 179.97438 * 10 8 7 12 12 H 1.09008 * 115.51914 * 350.58644 * 11 10 8 13 13 C 1.52999 * 117.44571 * 205.16586 * 11 10 8 14 14 H 1.08999 * 119.54236 * 4.16426 * 13 11 10 15 15 C 1.54395 * 118.12519 * 159.25645 * 13 11 10 16 16 N 1.51510 * 102.93425 * 88.08153 * 15 13 11 17 17 C 1.36939 * 127.62823 * 140.53098 * 16 15 13 18 18 H 1.08001 * 120.00034 * 194.70548 * 17 16 15 19 19 C 1.38814 * 120.00406 * 14.71007 * 17 16 15 20 20 N 1.31627 * 119.99530 * 9.02260 * 19 17 16 21 21 Si 1.86797 * 120.00124 * 189.02536 * 19 17 16 22 22 H 1.48495 * 109.47279 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47056 * 119.99923 * 21 19 17 24 24 H 1.48501 * 109.46993 * 239.99525 * 21 19 17 25 25 C 1.48141 * 104.52982 * 320.25156 * 16 15 13 26 26 C 1.53005 * 117.44539 * 135.99507 * 11 10 8 27 27 H 1.09003 * 119.53488 * 355.84251 * 26 11 10 28 28 H 1.09006 * 109.47479 * 300.00377 * 1 2 3 29 29 H 1.09007 * 109.47028 * 60.00066 * 1 2 3 30 30 H 1.09002 * 109.47450 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.46971 * 239.99705 * 2 1 3 32 32 H 1.09000 * 109.46890 * 119.99618 * 2 1 3 33 33 H 1.09001 * 109.47478 * 60.00229 * 3 2 1 34 34 H 1.09000 * 109.46978 * 299.99564 * 3 2 1 35 35 H 1.09008 * 109.46669 * 60.00054 * 6 4 3 36 36 H 1.08997 * 109.47282 * 180.02562 * 6 4 3 37 37 H 1.09006 * 109.47226 * 300.00581 * 6 4 3 38 38 H 1.09001 * 109.47016 * 64.99762 * 7 4 3 39 39 H 1.08995 * 109.47376 * 305.00215 * 7 4 3 40 40 H 0.97003 * 119.99511 * 0.02562 * 10 8 7 41 41 H 1.08990 * 110.40685 * 205.97810 * 15 13 11 42 42 H 1.08997 * 110.40493 * 328.41073 * 15 13 11 43 43 H 0.96996 * 119.99361 * 180.02562 * 20 19 17 44 44 H 1.09006 * 110.40812 * 281.08317 * 25 16 15 45 45 H 1.08998 * 110.40625 * 158.65360 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9337 0.8529 -0.8409 6 6 4.0795 0.8331 1.3083 7 6 4.0801 2.8794 -0.1251 8 6 5.5820 2.8704 -0.2480 9 8 6.1851 1.8182 -0.2357 10 7 6.2552 4.0316 -0.3706 11 6 7.7152 4.0228 -0.4895 12 1 8.1952 3.0605 -0.3111 13 6 8.4665 5.2789 -0.0436 14 1 7.9145 6.1040 0.4063 15 6 9.9646 5.1454 0.3055 16 7 10.6445 5.3551 -1.0321 17 6 11.7988 6.0476 -1.2838 18 1 12.0525 6.3244 -2.2964 19 6 12.6428 6.3937 -0.2375 20 7 12.4305 5.9082 0.9674 21 14 14.0797 7.5485 -0.5394 22 1 14.0989 7.9516 -1.9685 23 1 13.9321 8.7556 0.3129 24 1 15.3498 6.8569 -0.2024 25 6 9.7850 4.6380 -2.0024 26 6 8.3425 4.9391 -1.5421 27 1 7.6978 5.5109 -2.2096 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 3.7160 -0.1907 1.3979 36 1 5.1694 0.8334 1.3089 37 1 3.7157 1.4227 2.1499 38 1 3.7913 3.4462 0.7600 39 1 3.6458 3.3429 -1.0109 40 1 5.7728 4.8732 -0.3793 41 1 10.2614 5.9227 1.0095 42 1 10.1721 4.1581 0.7182 43 1 13.0200 6.1504 1.6986 44 1 9.9804 3.5662 -1.9638 45 1 9.9497 5.0191 -3.0102 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001114014406.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:48:40 Heat of formation + Delta-G solvation = -22.341120 kcal Electronic energy + Delta-G solvation = -21626.022937 eV Core-core repulsion = 18450.531517 eV Total energy + Delta-G solvation = -3175.491420 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.16739 -39.88485 -37.58979 -35.94797 -34.32201 -33.51961 -32.06671 -29.04316 -28.87662 -27.50005 -27.31695 -23.93241 -22.80803 -21.94482 -21.40570 -20.82745 -20.63557 -18.86502 -17.96455 -17.59531 -16.71946 -16.56173 -16.11107 -15.66994 -15.36716 -14.87954 -14.81227 -14.63446 -14.44489 -14.17788 -13.73323 -13.33648 -13.31986 -13.14373 -12.90888 -12.83628 -12.74569 -12.56925 -12.32679 -12.12471 -12.00277 -11.84829 -11.77757 -11.66340 -11.58311 -11.45021 -11.23788 -10.91066 -10.76750 -10.61267 -9.65877 -8.94649 -7.92035 -5.27900 1.46498 1.47153 1.58389 1.62957 2.05256 2.48275 2.86767 3.28825 3.52184 3.73923 3.82092 3.83544 3.94146 4.01595 4.13016 4.25397 4.32417 4.37174 4.45803 4.51489 4.60934 4.74369 4.77722 4.82609 4.85140 4.91303 4.97173 4.97388 5.01806 5.09861 5.22876 5.26859 5.28957 5.34577 5.40169 5.44457 5.46925 5.54509 5.60302 5.62901 5.64834 6.11657 6.60790 6.94853 7.32866 7.64128 8.43968 9.22652 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.060943 B = 0.002552 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.338760 B =10968.898729 C =11109.574482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.130 4.130 3 C -0.107 4.107 4 C -0.075 4.075 5 H 0.056 0.944 6 C -0.153 4.153 7 C -0.127 4.127 8 C 0.508 3.492 9 O -0.581 6.581 10 N -0.687 5.687 11 C 0.117 3.883 12 H 0.101 0.899 13 C -0.178 4.178 14 H 0.126 0.874 15 C 0.187 3.813 16 N -0.623 5.623 17 C -0.237 4.237 18 H 0.083 0.917 19 C -0.067 4.067 20 N -0.950 5.950 21 Si 0.982 3.018 22 H -0.264 1.264 23 H -0.289 1.289 24 H -0.294 1.294 25 C 0.150 3.850 26 C -0.166 4.166 27 H 0.136 0.864 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.056 0.944 36 H 0.041 0.959 37 H 0.059 0.941 38 H 0.118 0.882 39 H 0.122 0.878 40 H 0.418 0.582 41 H 0.061 0.939 42 H 0.002 0.998 43 H 0.250 0.750 44 H 0.015 0.985 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.312 -4.914 -2.033 25.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.167 4.167 3 C -0.144 4.144 4 C -0.094 4.094 5 H 0.075 0.925 6 C -0.211 4.211 7 C -0.166 4.166 8 C 0.298 3.702 9 O -0.460 6.460 10 N -0.337 5.337 11 C 0.009 3.991 12 H 0.119 0.881 13 C -0.199 4.199 14 H 0.144 0.856 15 C 0.062 3.938 16 N -0.348 5.348 17 C -0.366 4.366 18 H 0.101 0.899 19 C -0.260 4.260 20 N -0.598 5.598 21 Si 0.810 3.190 22 H -0.188 1.188 23 H -0.216 1.216 24 H -0.221 1.221 25 C 0.025 3.975 26 C -0.187 4.187 27 H 0.154 0.846 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.075 0.925 36 H 0.060 0.940 37 H 0.078 0.922 38 H 0.136 0.864 39 H 0.140 0.860 40 H 0.255 0.745 41 H 0.079 0.921 42 H 0.020 0.980 43 H 0.059 0.941 44 H 0.032 0.968 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -24.691 -5.556 -1.953 25.384 hybrid contribution 1.252 0.667 0.190 1.431 sum -23.439 -4.889 -1.763 24.008 Atomic orbital electron populations 1.21765 0.95160 1.01752 1.02120 1.21589 0.96314 0.97073 1.01747 1.21621 0.92674 0.97098 1.03043 1.20882 0.95931 0.94222 0.98356 0.92497 1.21965 1.01036 1.00921 0.97129 1.21825 0.88154 0.99990 1.06636 1.21565 0.91757 0.82651 0.74255 1.90677 1.71633 1.32490 1.51231 1.45302 1.04834 1.10000 1.73613 1.21352 0.81138 0.95105 1.01514 0.88122 1.24249 0.97066 0.99584 0.98983 0.85598 1.21386 0.86545 0.97533 0.88333 1.46341 1.25415 1.59707 1.03338 1.19458 0.96394 1.26617 0.94129 0.89945 1.25762 1.01359 1.02888 0.95988 1.70100 1.40726 1.47878 1.01104 0.84958 0.78229 0.77853 0.77936 1.18803 1.21606 1.22071 1.21199 0.88488 0.94129 0.93733 1.24256 0.97793 1.04207 0.92465 0.84630 0.92362 0.92380 0.92822 0.92758 0.92252 0.90821 0.90753 0.92489 0.93968 0.92189 0.86402 0.86033 0.74462 0.92055 0.97983 0.94133 0.96761 0.91854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.91 71.98 0.71 -0.82 16 2 C -0.13 -1.63 5.69 30.59 0.17 -1.46 16 3 C -0.11 -1.24 4.68 30.59 0.14 -1.09 16 4 C -0.07 -1.26 2.04 -10.79 -0.02 -1.29 16 5 H 0.06 1.21 7.95 -2.39 -0.02 1.19 16 6 C -0.15 -3.08 8.69 71.98 0.63 -2.46 16 7 C -0.13 -1.85 5.17 29.85 0.15 -1.69 16 8 C 0.51 12.66 7.55 87.66 0.66 13.32 16 9 O -0.58 -20.22 13.53 -3.05 -0.04 -20.27 16 10 N -0.69 -16.26 5.56 -442.53 -2.46 -18.72 16 11 C 0.12 3.83 5.97 44.99 0.27 4.10 16 12 H 0.10 4.01 7.40 -2.38 -0.02 4.00 16 13 C -0.18 -6.55 6.96 -9.93 -0.07 -6.62 16 14 H 0.13 4.02 8.14 -2.39 -0.02 4.00 16 15 C 0.19 9.34 5.91 85.86 0.51 9.85 16 16 N -0.62 -32.83 3.44 -679.08 -2.34 -35.17 16 17 C -0.24 -13.46 10.36 84.03 0.87 -12.59 16 18 H 0.08 4.46 7.84 -2.91 -0.02 4.44 16 19 C -0.07 -3.83 5.42 84.86 0.46 -3.37 16 20 N -0.95 -57.81 10.82 21.65 0.23 -57.58 16 21 Si 0.98 45.84 29.56 68.60 2.03 47.87 16 22 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 23 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 24 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 25 C 0.15 6.42 7.05 86.53 0.61 7.03 16 26 C -0.17 -5.65 7.05 -9.93 -0.07 -5.72 16 27 H 0.14 3.78 8.14 -2.39 -0.02 3.76 16 28 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 29 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 30 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.06 0.81 6.56 -2.39 -0.02 0.79 16 33 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.06 1.07 6.56 -2.38 -0.02 1.05 16 36 H 0.04 1.15 5.95 -2.39 -0.01 1.13 16 37 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 38 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.42 6.72 8.83 -92.71 -0.82 5.90 16 41 H 0.06 3.42 6.56 -2.39 -0.02 3.40 16 42 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 43 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 44 H 0.01 0.65 8.14 -2.38 -0.02 0.63 16 45 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 Total: -1.00 -72.06 356.67 2.59 -69.47 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: 0.14 Total: 17.21 kcal Atomic # 6 Polarization: -7.85 SS G_CDS: 5.03 Total: -2.82 kcal Atomic # 7 Polarization: -106.90 SS G_CDS: -4.57 Total: -111.47 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: -0.04 Total: -20.27 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -72.06 2.59 -69.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114014406.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.131 kcal (2) G-P(sol) polarization free energy of solvation -72.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds