Wall clock time and date at job start Tue Mar 31 2020 03:02:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47199 * 2 1 4 4 H 1.08999 * 109.47484 * 54.99947 * 3 2 1 5 5 C 1.53003 * 109.47116 * 295.00137 * 3 2 1 6 6 C 1.52993 * 109.47341 * 175.00172 * 3 2 1 7 7 C 1.53004 * 109.47217 * 185.00071 * 6 3 2 8 8 C 1.50705 * 109.46977 * 180.02562 * 7 6 3 9 9 O 1.21282 * 120.00272 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99960 * 179.97438 * 8 7 6 11 11 C 1.46496 * 119.99996 * 180.27166 * 10 8 7 12 12 H 1.08995 * 115.51435 * 9.30980 * 11 10 8 13 13 C 1.53003 * 117.44393 * 223.96540 * 11 10 8 14 14 H 1.08999 * 119.53848 * 4.11917 * 13 11 10 15 15 C 1.57694 * 116.11157 * 161.64086 * 13 11 10 16 16 N 1.48144 * 104.67231 * 87.31011 * 15 13 11 17 17 C 1.36939 * 127.83810 * 139.77870 * 16 15 13 18 18 H 1.08004 * 119.99403 * 344.33152 * 17 16 15 19 19 C 1.38805 * 120.00089 * 164.33274 * 17 16 15 20 20 N 1.31618 * 120.00316 * 350.56961 * 19 17 16 21 21 Si 1.86805 * 120.00036 * 170.56695 * 19 17 16 22 22 H 1.48508 * 109.46840 * 89.99920 * 21 19 17 23 23 H 1.48496 * 109.47370 * 209.99796 * 21 19 17 24 24 H 1.48500 * 109.46789 * 330.00455 * 21 19 17 25 25 C 1.48144 * 104.32315 * 319.76995 * 16 15 13 26 26 C 1.53001 * 117.44183 * 154.72578 * 11 10 8 27 27 H 1.09004 * 119.54159 * 355.88264 * 26 11 10 28 28 H 1.08998 * 109.47079 * 300.00025 * 1 2 3 29 29 H 1.08997 * 109.47412 * 59.99897 * 1 2 3 30 30 H 1.08998 * 109.47300 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47079 * 239.99975 * 2 1 3 32 32 H 1.09006 * 109.47295 * 119.99913 * 2 1 3 33 33 H 1.09003 * 109.47687 * 179.97438 * 5 3 2 34 34 H 1.09005 * 109.47195 * 300.00250 * 5 3 2 35 35 H 1.09007 * 109.47275 * 59.99895 * 5 3 2 36 36 H 1.08994 * 109.47304 * 64.99839 * 6 3 2 37 37 H 1.08999 * 109.47023 * 304.99794 * 6 3 2 38 38 H 1.08994 * 109.47173 * 59.99688 * 7 6 3 39 39 H 1.08999 * 109.46898 * 299.99799 * 7 6 3 40 40 H 0.97009 * 119.99864 * 359.97438 * 10 8 7 41 41 H 1.09001 * 110.91916 * 328.23106 * 15 13 11 42 42 H 1.08997 * 109.93061 * 205.89054 * 15 13 11 43 43 H 0.96995 * 119.99951 * 180.02562 * 20 19 17 44 44 H 1.09002 * 110.41299 * 280.80343 * 25 16 15 45 45 H 1.09002 * 110.40618 * 158.37140 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1265 -1.3074 6 6 3.5648 1.4443 0.1257 7 6 4.0644 2.8850 0.2511 8 6 5.5664 2.8868 0.3742 9 8 6.1771 1.8390 0.3633 10 7 6.2311 4.0529 0.4966 11 6 7.6917 4.0550 0.6103 12 1 8.1780 3.0963 0.4302 13 6 8.3157 4.9748 1.6617 14 1 7.6692 5.5414 2.3318 15 6 9.8010 4.6462 2.0775 16 7 10.6358 5.3766 1.0956 17 6 11.7972 6.0642 1.3271 18 1 12.0726 6.3347 2.3358 19 6 12.6204 6.4136 0.2655 20 7 12.3865 5.9291 -0.9358 21 14 14.0601 7.5714 0.5416 22 1 15.2681 6.7834 0.8954 23 1 14.3191 8.3440 -0.6998 24 1 13.7375 8.5070 1.6488 25 6 9.9294 5.1941 -0.1937 26 6 8.4320 5.3166 0.1617 27 1 7.8721 6.1379 -0.2856 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.9981 3.1544 -1.3073 34 1 2.0698 1.5874 -2.1492 35 1 0.5488 2.1252 -1.3969 36 1 4.0029 0.9836 -0.7596 37 1 3.8570 0.8800 1.0113 38 1 3.6263 3.3457 1.1364 39 1 3.7722 3.4493 -0.6345 40 1 5.7427 4.8910 0.5049 41 1 9.9938 3.5751 2.0183 42 1 9.9938 5.0112 3.0863 43 1 12.9620 6.1730 -1.6775 44 1 10.1423 4.2085 -0.6077 45 1 10.2177 5.9738 -0.8988 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115007995.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:48 Heat of formation + Delta-G solvation = -5.350207 kcal Electronic energy + Delta-G solvation = -21467.631861 eV Core-core repulsion = 18292.877222 eV Total energy + Delta-G solvation = -3174.754639 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.86246 -38.38552 -37.23732 -34.43217 -32.80515 -32.26456 -30.29312 -28.96769 -27.01677 -26.29288 -25.42325 -23.09452 -21.51968 -20.48285 -20.15068 -19.91988 -19.28296 -17.00657 -16.80176 -16.21048 -15.88884 -15.21828 -14.74496 -14.68177 -14.06217 -13.73643 -13.56517 -13.46430 -13.20564 -12.79059 -12.73026 -12.25748 -12.21373 -11.97996 -11.93279 -11.48771 -11.46168 -11.17458 -10.98357 -10.83450 -10.82872 -10.78006 -10.68083 -10.34942 -10.19445 -10.15905 -9.75835 -9.69368 -9.19260 -8.73638 -8.29529 -6.87131 -5.80241 -3.14372 2.69975 3.18553 3.38290 3.43390 3.45465 4.33937 4.43507 4.46979 4.54975 4.59862 4.85212 4.96993 5.08852 5.13638 5.19333 5.26181 5.27149 5.37627 5.40076 5.41681 5.50295 5.58459 5.65729 5.73487 5.74852 5.77737 5.81529 5.82473 5.87586 6.00381 6.15068 6.17186 6.21530 6.28385 6.52555 6.69452 6.84112 6.89536 7.35010 7.52647 7.62999 7.71061 8.19962 8.34667 9.10392 9.73282 10.50537 11.34283 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.059474 B = 0.002461 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.680741 B =11373.539786 C =11486.200714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.121 4.121 3 C -0.093 4.093 4 H 0.069 0.931 5 C -0.152 4.152 6 C -0.100 4.100 7 C -0.141 4.141 8 C 0.512 3.488 9 O -0.540 6.540 10 N -0.701 5.701 11 C 0.093 3.907 12 H 0.130 0.870 13 C -0.186 4.186 14 H 0.106 0.894 15 C 0.157 3.843 16 N -0.593 5.593 17 C -0.227 4.227 18 H 0.077 0.923 19 C -0.006 4.006 20 N -0.915 5.915 21 Si 0.913 3.087 22 H -0.287 1.287 23 H -0.289 1.289 24 H -0.280 1.280 25 C 0.186 3.814 26 C -0.181 4.181 27 H 0.100 0.900 28 H 0.052 0.948 29 H 0.056 0.944 30 H 0.051 0.949 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.398 0.602 41 H 0.030 0.970 42 H 0.050 0.950 43 H 0.255 0.745 44 H 0.026 0.974 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.226 -5.868 1.161 23.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.112 4.112 4 H 0.088 0.912 5 C -0.209 4.209 6 C -0.138 4.138 7 C -0.181 4.181 8 C 0.299 3.701 9 O -0.417 6.417 10 N -0.349 5.349 11 C -0.013 4.013 12 H 0.148 0.852 13 C -0.207 4.207 14 H 0.124 0.876 15 C 0.030 3.970 16 N -0.316 5.316 17 C -0.355 4.355 18 H 0.095 0.905 19 C -0.203 4.203 20 N -0.561 5.561 21 Si 0.743 3.257 22 H -0.214 1.214 23 H -0.216 1.216 24 H -0.206 1.206 25 C 0.060 3.940 26 C -0.202 4.202 27 H 0.118 0.882 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.109 0.891 39 H 0.112 0.888 40 H 0.231 0.769 41 H 0.048 0.952 42 H 0.068 0.932 43 H 0.065 0.935 44 H 0.044 0.956 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -22.540 -6.520 1.031 23.486 hybrid contribution 0.410 1.215 0.086 1.285 sum -22.130 -5.306 1.117 22.784 Atomic orbital electron populations 1.21825 0.96034 1.01443 1.01786 1.21568 0.95671 0.96340 1.02235 1.21202 0.95289 0.96297 0.98390 0.91219 1.21962 1.01174 1.00514 0.97284 1.21398 0.94040 0.94730 1.03585 1.21745 0.91919 1.00268 1.04137 1.20725 0.90057 0.83574 0.75786 1.90704 1.69976 1.31399 1.49622 1.45470 1.06898 1.08664 1.73901 1.21882 0.78869 0.97298 1.03217 0.85196 1.25083 0.99084 1.03824 0.92757 0.87630 1.21692 0.86446 0.95005 0.93819 1.45127 1.24282 1.58967 1.03265 1.18979 0.95394 1.27491 0.93642 0.90535 1.24909 0.98456 1.00901 0.96062 1.69900 1.40100 1.46159 0.99933 0.86111 0.82151 0.80424 0.76995 1.21418 1.21555 1.20574 1.21056 0.82850 1.00379 0.89761 1.24627 1.00116 0.97394 0.98073 0.88166 0.92877 0.92543 0.92966 0.91904 0.91918 0.92548 0.92583 0.92607 0.91080 0.91148 0.89095 0.88839 0.76858 0.95205 0.93155 0.93521 0.95602 0.89163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.67 37.16 0.36 -0.58 16 2 C -0.12 -0.86 5.40 -26.73 -0.14 -1.00 16 3 C -0.09 -0.67 2.39 -90.62 -0.22 -0.89 16 4 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 5 C -0.15 -1.01 8.70 37.16 0.32 -0.69 16 6 C -0.10 -0.94 3.97 -26.73 -0.11 -1.04 16 7 C -0.14 -1.27 5.46 -27.88 -0.15 -1.42 16 8 C 0.51 7.03 7.83 -10.98 -0.09 6.94 16 9 O -0.54 -9.79 15.55 5.56 0.09 -9.71 16 10 N -0.70 -9.38 5.56 -53.81 -0.30 -9.68 16 11 C 0.09 1.60 5.92 -67.93 -0.40 1.20 16 12 H 0.13 2.57 7.40 -51.93 -0.38 2.19 16 13 C -0.19 -3.35 7.34 -87.38 -0.64 -3.99 16 14 H 0.11 1.69 8.14 -51.93 -0.42 1.27 16 15 C 0.16 3.38 7.10 -0.57 0.00 3.38 16 16 N -0.59 -15.38 3.38 -166.74 -0.56 -15.94 16 17 C -0.23 -6.36 10.35 -15.06 -0.16 -6.51 16 18 H 0.08 2.06 7.85 -52.48 -0.41 1.65 16 19 C -0.01 -0.17 5.40 -17.43 -0.09 -0.27 16 20 N -0.91 -26.93 10.88 55.49 0.60 -26.33 16 21 Si 0.91 21.95 29.56 -169.99 -5.03 16.93 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 C 0.19 4.51 5.70 -2.41 -0.01 4.50 16 26 C -0.18 -3.44 6.98 -89.22 -0.62 -4.06 16 27 H 0.10 1.73 8.14 -51.93 -0.42 1.31 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.32 6.56 -51.93 -0.34 -0.02 16 30 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.35 6.57 -51.93 -0.34 0.01 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.05 0.33 6.57 -51.93 -0.34 -0.01 16 36 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 37 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16 38 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.09 0.69 6.57 -51.93 -0.34 0.35 16 40 H 0.40 4.09 8.83 -40.82 -0.36 3.72 16 41 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 43 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 44 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.09 2.43 6.53 -51.93 -0.34 2.09 16 LS Contribution 357.53 15.07 5.39 5.39 Total: -1.00 -32.02 357.53 -9.67 -41.69 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -7.91 Total: 2.07 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: -1.96 Total: -4.43 kcal Atomic # 7 Polarization: -51.69 SS G_CDS: -0.26 Total: -51.95 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.09 Total: -9.71 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.03 Total: 16.93 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.02 -9.67 -41.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115007995.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.343 kcal (2) G-P(sol) polarization free energy of solvation -32.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds