Wall clock time and date at job start Tue Mar 31 2020 03:02:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47199 * 2 1 4 4 H 1.08999 * 109.47484 * 54.99947 * 3 2 1 5 5 C 1.53003 * 109.47116 * 295.00137 * 3 2 1 6 6 C 1.52993 * 109.47341 * 175.00172 * 3 2 1 7 7 C 1.53004 * 109.47217 * 185.00071 * 6 3 2 8 8 C 1.50705 * 109.46977 * 180.02562 * 7 6 3 9 9 O 1.21282 * 120.00272 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99960 * 179.97438 * 8 7 6 11 11 C 1.46496 * 119.99996 * 180.27166 * 10 8 7 12 12 H 1.08995 * 115.51435 * 9.30980 * 11 10 8 13 13 C 1.53003 * 117.44393 * 223.96540 * 11 10 8 14 14 H 1.08999 * 119.53848 * 4.11917 * 13 11 10 15 15 C 1.57694 * 116.11157 * 161.64086 * 13 11 10 16 16 N 1.48144 * 104.67231 * 87.31011 * 15 13 11 17 17 C 1.36939 * 127.83810 * 139.77870 * 16 15 13 18 18 H 1.08004 * 119.99403 * 344.33152 * 17 16 15 19 19 C 1.38805 * 120.00089 * 164.33274 * 17 16 15 20 20 N 1.31618 * 120.00316 * 350.56961 * 19 17 16 21 21 Si 1.86805 * 120.00036 * 170.56695 * 19 17 16 22 22 H 1.48508 * 109.46840 * 89.99920 * 21 19 17 23 23 H 1.48496 * 109.47370 * 209.99796 * 21 19 17 24 24 H 1.48500 * 109.46789 * 330.00455 * 21 19 17 25 25 C 1.48144 * 104.32315 * 319.76995 * 16 15 13 26 26 C 1.53001 * 117.44183 * 154.72578 * 11 10 8 27 27 H 1.09004 * 119.54159 * 355.88264 * 26 11 10 28 28 H 1.08998 * 109.47079 * 300.00025 * 1 2 3 29 29 H 1.08997 * 109.47412 * 59.99897 * 1 2 3 30 30 H 1.08998 * 109.47300 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47079 * 239.99975 * 2 1 3 32 32 H 1.09006 * 109.47295 * 119.99913 * 2 1 3 33 33 H 1.09003 * 109.47687 * 179.97438 * 5 3 2 34 34 H 1.09005 * 109.47195 * 300.00250 * 5 3 2 35 35 H 1.09007 * 109.47275 * 59.99895 * 5 3 2 36 36 H 1.08994 * 109.47304 * 64.99839 * 6 3 2 37 37 H 1.08999 * 109.47023 * 304.99794 * 6 3 2 38 38 H 1.08994 * 109.47173 * 59.99688 * 7 6 3 39 39 H 1.08999 * 109.46898 * 299.99799 * 7 6 3 40 40 H 0.97009 * 119.99864 * 359.97438 * 10 8 7 41 41 H 1.09001 * 110.91916 * 328.23106 * 15 13 11 42 42 H 1.08997 * 109.93061 * 205.89054 * 15 13 11 43 43 H 0.96995 * 119.99951 * 180.02562 * 20 19 17 44 44 H 1.09002 * 110.41299 * 280.80343 * 25 16 15 45 45 H 1.09002 * 110.40618 * 158.37140 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1265 -1.3074 6 6 3.5648 1.4443 0.1257 7 6 4.0644 2.8850 0.2511 8 6 5.5664 2.8868 0.3742 9 8 6.1771 1.8390 0.3633 10 7 6.2311 4.0529 0.4966 11 6 7.6917 4.0550 0.6103 12 1 8.1780 3.0963 0.4302 13 6 8.3157 4.9748 1.6617 14 1 7.6692 5.5414 2.3318 15 6 9.8010 4.6462 2.0775 16 7 10.6358 5.3766 1.0956 17 6 11.7972 6.0642 1.3271 18 1 12.0726 6.3347 2.3358 19 6 12.6204 6.4136 0.2655 20 7 12.3865 5.9291 -0.9358 21 14 14.0601 7.5714 0.5416 22 1 15.2681 6.7834 0.8954 23 1 14.3191 8.3440 -0.6998 24 1 13.7375 8.5070 1.6488 25 6 9.9294 5.1941 -0.1937 26 6 8.4320 5.3166 0.1617 27 1 7.8721 6.1379 -0.2856 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.9981 3.1544 -1.3073 34 1 2.0698 1.5874 -2.1492 35 1 0.5488 2.1252 -1.3969 36 1 4.0029 0.9836 -0.7596 37 1 3.8570 0.8800 1.0113 38 1 3.6263 3.3457 1.1364 39 1 3.7722 3.4493 -0.6345 40 1 5.7427 4.8910 0.5049 41 1 9.9938 3.5751 2.0183 42 1 9.9938 5.0112 3.0863 43 1 12.9620 6.1730 -1.6775 44 1 10.1423 4.2085 -0.6077 45 1 10.2177 5.9738 -0.8988 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115007995.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:48 Heat of formation + Delta-G solvation = -24.846239 kcal Electronic energy + Delta-G solvation = -21468.477272 eV Core-core repulsion = 18292.877222 eV Total energy + Delta-G solvation = -3175.600050 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.11640 -39.83148 -37.95882 -36.07217 -34.33782 -33.18741 -32.03943 -29.62830 -28.81502 -27.69139 -26.63564 -24.10826 -22.96026 -21.96370 -21.20687 -20.89433 -20.70014 -18.86606 -18.00141 -17.59081 -16.77890 -16.67277 -15.91966 -15.68935 -15.50923 -14.96129 -14.75462 -14.64965 -14.30589 -14.29971 -13.76131 -13.46400 -13.31928 -13.17672 -12.87311 -12.76804 -12.72417 -12.60386 -12.46371 -12.11544 -12.01305 -11.88436 -11.82283 -11.68491 -11.44506 -11.36288 -11.26818 -10.97241 -10.81666 -10.68223 -9.68395 -8.94618 -7.93489 -5.30621 1.46317 1.48077 1.57846 1.59829 2.03593 2.47813 2.86524 3.27249 3.57748 3.72857 3.82171 3.83894 3.95941 4.00193 4.07142 4.16842 4.29504 4.35135 4.45144 4.51385 4.59954 4.67489 4.75244 4.78786 4.83463 4.92266 4.95631 4.96076 5.12218 5.15089 5.22481 5.26065 5.26699 5.28806 5.36972 5.40573 5.44429 5.55612 5.61537 5.61857 5.62578 6.14512 6.58048 6.98200 7.29257 7.65208 8.43943 9.20658 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.059474 B = 0.002461 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.680741 B =11373.539786 C =11486.200714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C -0.086 4.086 4 H 0.083 0.917 5 C -0.152 4.152 6 C -0.098 4.098 7 C -0.128 4.128 8 C 0.508 3.492 9 O -0.591 6.591 10 N -0.686 5.686 11 C 0.112 3.888 12 H 0.099 0.901 13 C -0.165 4.165 14 H 0.142 0.858 15 C 0.148 3.852 16 N -0.617 5.617 17 C -0.242 4.242 18 H 0.083 0.917 19 C -0.065 4.065 20 N -0.949 5.949 21 Si 0.984 3.016 22 H -0.285 1.285 23 H -0.292 1.292 24 H -0.266 1.266 25 C 0.189 3.811 26 C -0.180 4.180 27 H 0.127 0.873 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.046 0.954 35 H 0.065 0.935 36 H 0.049 0.951 37 H 0.053 0.947 38 H 0.123 0.877 39 H 0.119 0.881 40 H 0.419 0.581 41 H 0.019 0.981 42 H 0.062 0.938 43 H 0.250 0.750 44 H -0.007 1.007 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.794 -4.290 2.309 26.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.104 4.104 4 H 0.101 0.899 5 C -0.209 4.209 6 C -0.136 4.136 7 C -0.168 4.168 8 C 0.297 3.703 9 O -0.471 6.471 10 N -0.336 5.336 11 C 0.004 3.996 12 H 0.117 0.883 13 C -0.186 4.186 14 H 0.160 0.840 15 C 0.022 3.978 16 N -0.341 5.341 17 C -0.370 4.370 18 H 0.101 0.899 19 C -0.258 4.258 20 N -0.596 5.596 21 Si 0.811 3.189 22 H -0.212 1.212 23 H -0.218 1.218 24 H -0.191 1.191 25 C 0.063 3.937 26 C -0.201 4.201 27 H 0.145 0.855 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.065 0.935 35 H 0.084 0.916 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.141 0.859 39 H 0.137 0.863 40 H 0.257 0.743 41 H 0.036 0.964 42 H 0.081 0.919 43 H 0.059 0.941 44 H 0.011 0.989 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -25.163 -4.925 2.205 25.735 hybrid contribution 1.210 0.602 -0.260 1.376 sum -23.953 -4.322 1.945 24.418 Atomic orbital electron populations 1.21804 0.94970 1.01762 1.02280 1.21588 0.96597 0.96383 1.01572 1.21148 0.93408 0.96492 0.99370 0.89852 1.21972 1.01819 1.00767 0.96389 1.21365 0.95651 0.94818 1.01810 1.21790 0.87814 1.00437 1.06728 1.21650 0.91929 0.82571 0.74144 1.90698 1.71359 1.33266 1.51746 1.45295 1.04904 1.09934 1.73489 1.21388 0.81137 0.95087 1.01955 0.88282 1.24995 0.97353 1.03804 0.92425 0.84042 1.21831 0.88294 0.93997 0.93695 1.45433 1.24608 1.59437 1.04619 1.19396 0.96274 1.27310 0.94037 0.89886 1.25806 1.01415 1.02746 0.95845 1.70106 1.41208 1.47648 1.00680 0.85016 0.78579 0.78317 0.76978 1.21231 1.21822 1.19050 1.20790 0.86572 0.97369 0.88977 1.24306 0.97167 0.99484 0.99180 0.85545 0.92309 0.92047 0.92837 0.92744 0.92547 0.91550 0.93501 0.91636 0.93222 0.92847 0.85922 0.86292 0.74348 0.96351 0.91912 0.94052 0.98901 0.92284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.67 71.98 0.70 -0.86 16 2 C -0.12 -1.62 5.40 30.59 0.17 -1.45 16 3 C -0.09 -1.05 2.39 -10.80 -0.03 -1.07 16 4 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 5 C -0.15 -1.62 8.70 71.98 0.63 -0.99 16 6 C -0.10 -1.72 3.97 30.59 0.12 -1.59 16 7 C -0.13 -1.91 5.46 29.85 0.16 -1.75 16 8 C 0.51 13.02 7.83 87.66 0.69 13.71 16 9 O -0.59 -21.51 15.55 -3.04 -0.05 -21.56 16 10 N -0.69 -16.49 5.56 -442.53 -2.46 -18.95 16 11 C 0.11 3.72 5.92 44.99 0.27 3.99 16 12 H 0.10 4.03 7.40 -2.39 -0.02 4.01 16 13 C -0.16 -5.59 7.34 -8.69 -0.06 -5.65 16 14 H 0.14 3.88 8.14 -2.39 -0.02 3.86 16 15 C 0.15 6.33 7.10 87.73 0.62 6.95 16 16 N -0.62 -32.59 3.38 -681.43 -2.30 -34.90 16 17 C -0.24 -13.70 10.35 84.03 0.87 -12.83 16 18 H 0.08 4.47 7.85 -2.91 -0.02 4.44 16 19 C -0.06 -3.70 5.40 84.86 0.46 -3.24 16 20 N -0.95 -57.82 10.88 21.65 0.24 -57.58 16 21 Si 0.98 45.64 29.56 68.60 2.03 47.67 16 22 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 23 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 24 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 25 C 0.19 9.53 5.70 86.53 0.49 10.02 16 26 C -0.18 -6.69 6.98 -9.89 -0.07 -6.76 16 27 H 0.13 4.05 8.14 -2.38 -0.02 4.03 16 28 H 0.06 0.54 8.14 -2.39 -0.02 0.53 16 29 H 0.06 0.57 6.56 -2.39 -0.02 0.56 16 30 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 33 H 0.07 0.57 6.57 -2.39 -0.02 0.56 16 34 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 35 H 0.06 0.58 6.57 -2.38 -0.02 0.57 16 36 H 0.05 1.07 8.10 -2.39 -0.02 1.05 16 37 H 0.05 1.11 8.10 -2.39 -0.02 1.09 16 38 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.12 1.25 6.57 -2.39 -0.02 1.23 16 40 H 0.42 6.75 8.83 -92.70 -0.82 5.93 16 41 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 43 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 44 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 45 H 0.06 3.32 6.53 -2.39 -0.02 3.30 16 Total: -1.00 -72.96 357.53 2.60 -70.36 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: 0.14 Total: 16.49 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: 5.01 Total: -1.53 kcal Atomic # 7 Polarization: -106.90 SS G_CDS: -4.53 Total: -111.43 kcal Atomic # 8 Polarization: -21.51 SS G_CDS: -0.05 Total: -21.56 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -72.96 2.60 -70.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115007995.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.511 kcal (2) G-P(sol) polarization free energy of solvation -72.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds