Wall clock time and date at job start Tue Mar 31 2020 01:48:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47094 * 2 1 4 4 C 1.52996 * 109.47459 * 180.02562 * 3 2 1 5 5 H 1.09009 * 109.46841 * 304.99656 * 4 3 2 6 6 C 1.53004 * 109.47383 * 64.99329 * 4 3 2 7 7 C 1.53002 * 109.46885 * 65.40091 * 6 4 3 8 8 C 1.50697 * 109.47579 * 184.99819 * 4 3 2 9 9 O 1.21287 * 119.99734 * 347.25204 * 8 4 3 10 10 N 1.34775 * 120.00476 * 167.24995 * 8 4 3 11 11 C 1.46492 * 120.00311 * 184.85113 * 10 8 4 12 12 H 1.09006 * 115.49602 * 350.38163 * 11 10 8 13 13 C 1.52996 * 117.44475 * 205.00248 * 11 10 8 14 14 H 1.09004 * 119.54308 * 4.11760 * 13 11 10 15 15 C 1.54394 * 118.12335 * 159.21401 * 13 11 10 16 16 N 1.51830 * 102.86528 * 88.02128 * 15 13 11 17 17 C 1.36941 * 127.61043 * 140.54741 * 16 15 13 18 18 H 1.08001 * 119.99790 * 191.09063 * 17 16 15 19 19 C 1.38807 * 120.00070 * 11.09346 * 17 16 15 20 20 N 1.31619 * 120.00183 * 10.22783 * 19 17 16 21 21 Si 1.86801 * 120.00076 * 190.22936 * 19 17 16 22 22 H 1.48499 * 109.46990 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47313 * 119.99807 * 21 19 17 24 24 H 1.48500 * 109.47193 * 239.99760 * 21 19 17 25 25 C 1.48147 * 104.55156 * 320.27062 * 16 15 13 26 26 C 1.53005 * 117.44558 * 135.76043 * 11 10 8 27 27 H 1.09001 * 119.53450 * 355.88620 * 26 11 10 28 28 H 1.09000 * 109.47035 * 60.00424 * 1 2 3 29 29 H 1.09002 * 109.46758 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47654 * 300.00268 * 1 2 3 31 31 H 1.08999 * 109.47654 * 239.99732 * 2 1 3 32 32 H 1.09000 * 109.47035 * 119.99576 * 2 1 3 33 33 H 1.08999 * 109.47088 * 59.99386 * 3 2 1 34 34 H 1.09000 * 109.46833 * 299.99699 * 3 2 1 35 35 H 1.09001 * 109.47067 * 185.40167 * 6 4 3 36 36 H 1.09000 * 109.47171 * 305.40373 * 6 4 3 37 37 H 1.08994 * 109.47075 * 183.13119 * 7 6 4 38 38 H 1.08995 * 109.47144 * 303.13363 * 7 6 4 39 39 H 1.09000 * 109.46986 * 63.13630 * 7 6 4 40 40 H 0.97006 * 119.99642 * 4.85939 * 10 8 4 41 41 H 1.08996 * 110.40703 * 205.97372 * 15 13 11 42 42 H 1.08997 * 110.40472 * 328.40401 * 15 13 11 43 43 H 0.96994 * 120.00441 * 180.02562 * 20 19 17 44 44 H 1.09004 * 110.40448 * 281.07567 * 25 16 15 45 45 H 1.08997 * 110.40982 * 158.65057 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9336 0.8531 0.8410 6 6 4.0795 0.8330 -1.3082 7 6 3.6828 1.7340 -2.4795 8 6 4.0723 2.8580 0.1231 9 8 3.3085 3.7879 -0.0277 10 7 5.3704 3.0905 0.4015 11 6 5.8372 4.4606 0.6269 12 1 5.1180 5.2457 0.3933 13 6 7.3144 4.7552 0.3591 14 1 7.9532 3.9722 -0.0496 15 6 7.7306 6.2210 0.1098 16 7 7.9998 6.7390 1.5114 17 6 9.0042 7.5784 1.9136 18 1 9.1928 7.7293 2.9662 19 6 9.7800 8.2353 0.9683 20 7 9.4297 8.2144 -0.3002 21 14 11.3213 9.1490 1.4966 22 1 11.4928 9.0219 2.9662 23 1 12.5017 8.5680 0.8080 24 1 11.1943 10.5838 1.1358 25 6 6.9298 6.1389 2.3419 26 6 6.7825 4.6985 1.8062 27 1 7.0249 3.8731 2.4756 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6765 1.9564 0.8899 34 1 1.6766 1.9563 -0.8900 35 1 5.1652 0.7448 -1.2691 36 1 3.6393 -0.1548 -1.4444 37 1 3.9970 1.2724 -3.4156 38 1 2.6011 1.8673 -2.4852 39 1 4.1679 2.7042 -2.3721 40 1 5.9955 2.3505 0.4525 41 1 8.6377 6.2612 -0.4933 42 1 6.9238 6.7673 -0.3787 43 1 9.9719 8.6730 -0.9608 44 1 5.9971 6.6887 2.2154 45 1 7.2250 6.1260 3.3910 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115035543.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:48:48 Heat of formation + Delta-G solvation = -0.500475 kcal Electronic energy + Delta-G solvation = -22126.031815 eV Core-core repulsion = 18951.487476 eV Total energy + Delta-G solvation = -3174.544339 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.17009 -38.47121 -36.39083 -34.35497 -33.23197 -32.41009 -30.17400 -29.01800 -27.11955 -25.92579 -24.98621 -23.26599 -21.93048 -20.82563 -20.39013 -19.26111 -19.13321 -16.90919 -16.73098 -16.35486 -16.03032 -15.26708 -14.69489 -14.45431 -14.07717 -13.70359 -13.59459 -13.31888 -13.07606 -12.82739 -12.72276 -12.24800 -12.16578 -12.02321 -11.53317 -11.49165 -11.43031 -11.21016 -11.12344 -11.01046 -10.83940 -10.80890 -10.56984 -10.40100 -10.17074 -10.10858 -9.68172 -9.59065 -9.16479 -8.74606 -8.29844 -6.89632 -5.76846 -3.09199 2.70293 3.17557 3.39192 3.44877 3.47388 4.32218 4.47179 4.47522 4.52055 4.66276 4.88690 4.92217 5.03098 5.13431 5.17968 5.35586 5.36612 5.40929 5.42609 5.44800 5.57061 5.58633 5.66347 5.71621 5.79773 5.82237 5.85076 5.90469 5.96822 6.05921 6.09133 6.17938 6.27652 6.30516 6.54348 6.69289 6.84414 6.89859 7.32149 7.53067 7.63777 7.72155 8.15941 8.35143 9.07804 9.74459 10.49913 11.37358 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.044459 B = 0.002999 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.642477 B = 9335.060311 C = 9599.133618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.103 4.103 4 C -0.108 4.108 5 H 0.092 0.908 6 C -0.114 4.114 7 C -0.159 4.159 8 C 0.521 3.479 9 O -0.538 6.538 10 N -0.699 5.699 11 C 0.095 3.905 12 H 0.130 0.870 13 C -0.177 4.177 14 H 0.101 0.899 15 C 0.182 3.818 16 N -0.599 5.599 17 C -0.221 4.221 18 H 0.079 0.921 19 C -0.010 4.010 20 N -0.918 5.918 21 Si 0.912 3.088 22 H -0.279 1.279 23 H -0.290 1.290 24 H -0.291 1.291 25 C 0.159 3.841 26 C -0.184 4.184 27 H 0.102 0.898 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.055 0.945 38 H 0.061 0.939 39 H 0.058 0.942 40 H 0.397 0.603 41 H 0.098 0.902 42 H 0.030 0.970 43 H 0.253 0.747 44 H 0.026 0.974 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.381 -18.766 -1.055 22.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.141 4.141 4 C -0.130 4.130 5 H 0.110 0.890 6 C -0.152 4.152 7 C -0.216 4.216 8 C 0.308 3.692 9 O -0.414 6.414 10 N -0.348 5.348 11 C -0.011 4.011 12 H 0.148 0.852 13 C -0.198 4.198 14 H 0.119 0.881 15 C 0.057 3.943 16 N -0.324 5.324 17 C -0.349 4.349 18 H 0.096 0.904 19 C -0.206 4.206 20 N -0.565 5.565 21 Si 0.743 3.257 22 H -0.205 1.205 23 H -0.217 1.217 24 H -0.218 1.218 25 C 0.032 3.968 26 C -0.205 4.205 27 H 0.120 0.880 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.094 0.906 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.231 0.769 41 H 0.116 0.884 42 H 0.048 0.952 43 H 0.064 0.936 44 H 0.043 0.957 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.741 -17.897 -1.210 22.003 hybrid contribution 1.269 0.004 0.319 1.309 sum -11.472 -17.894 -0.891 21.274 Atomic orbital electron populations 1.21760 0.95804 1.01387 1.02032 1.21601 0.95981 0.96746 1.01972 1.21474 0.92256 0.96600 1.03736 1.21424 0.97970 0.93580 1.00016 0.89000 1.21532 1.00926 0.99518 0.93235 1.21874 1.02208 1.00000 0.97506 1.20556 0.81786 0.91293 0.75592 1.90698 1.55659 1.45601 1.49461 1.45432 1.09413 1.08514 1.71407 1.21865 0.93165 0.84296 1.01766 0.85213 1.24573 0.93688 1.02220 0.99362 0.88129 1.21792 1.00193 0.84574 0.87735 1.46110 1.28909 1.54045 1.03354 1.19082 1.05929 1.17666 0.92267 0.90369 1.24818 1.00251 0.99840 0.95716 1.69876 1.38929 1.47274 1.00438 0.86041 0.82917 0.79101 0.77679 1.20453 1.21682 1.21766 1.21050 0.92046 0.88865 0.94831 1.24378 1.04186 1.00321 0.91627 0.88009 0.92676 0.92899 0.92696 0.91723 0.92120 0.91400 0.90617 0.91577 0.90610 0.92585 0.92029 0.92316 0.76895 0.88363 0.95201 0.93649 0.95676 0.93023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.91 37.16 0.37 -0.70 16 2 C -0.13 -0.91 5.70 -26.73 -0.15 -1.06 16 3 C -0.10 -0.99 3.87 -26.73 -0.10 -1.09 16 4 C -0.11 -1.04 2.50 -91.77 -0.23 -1.27 16 5 H 0.09 0.72 8.14 -51.92 -0.42 0.30 16 6 C -0.11 -0.93 5.58 -26.73 -0.15 -1.08 16 7 C -0.16 -1.56 9.35 37.16 0.35 -1.21 16 8 C 0.52 7.15 5.58 -10.99 -0.06 7.09 16 9 O -0.54 -9.59 15.63 5.55 0.09 -9.50 16 10 N -0.70 -9.38 5.56 -53.81 -0.30 -9.68 16 11 C 0.10 1.62 5.98 -67.93 -0.41 1.21 16 12 H 0.13 2.54 7.39 -51.93 -0.38 2.16 16 13 C -0.18 -3.36 6.96 -89.22 -0.62 -3.98 16 14 H 0.10 1.75 8.14 -51.93 -0.42 1.32 16 15 C 0.18 4.39 6.00 -0.29 0.00 4.39 16 16 N -0.60 -15.50 3.46 -165.71 -0.57 -16.08 16 17 C -0.22 -6.20 10.37 -15.06 -0.16 -6.36 16 18 H 0.08 2.12 7.85 -52.49 -0.41 1.71 16 19 C -0.01 -0.28 5.42 -17.43 -0.09 -0.37 16 20 N -0.92 -26.98 10.68 55.49 0.59 -26.38 16 21 Si 0.91 22.04 29.57 -169.99 -5.03 17.02 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 25 C 0.16 3.40 7.05 -2.41 -0.02 3.38 16 26 C -0.18 -3.31 7.06 -89.22 -0.63 -3.94 16 27 H 0.10 1.64 8.14 -51.93 -0.42 1.22 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.42 6.45 -51.93 -0.34 0.09 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.74 8.13 -51.93 -0.42 0.32 16 34 H 0.08 0.81 6.26 -51.93 -0.32 0.49 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.08 0.50 6.33 -51.93 -0.33 0.17 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.61 6.34 -51.93 -0.33 0.28 16 39 H 0.06 0.73 7.19 -51.93 -0.37 0.35 16 40 H 0.40 4.21 8.83 -40.82 -0.36 3.85 16 41 H 0.10 2.63 6.35 -51.93 -0.33 2.30 16 42 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 44 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 354.68 15.07 5.34 5.34 Total: -1.00 -31.69 354.68 -9.59 -41.28 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -7.81 Total: 2.98 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: -1.91 Total: -4.98 kcal Atomic # 7 Polarization: -51.86 SS G_CDS: -0.28 Total: -52.14 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.09 Total: -9.50 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.03 Total: 17.02 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.69 -9.59 -41.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115035543.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.775 kcal (2) G-P(sol) polarization free energy of solvation -31.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds