Wall clock time and date at job start Tue Mar 31 2020 01:48:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47094 * 2 1 4 4 C 1.52996 * 109.47459 * 180.02562 * 3 2 1 5 5 H 1.09009 * 109.46841 * 304.99656 * 4 3 2 6 6 C 1.53004 * 109.47383 * 64.99329 * 4 3 2 7 7 C 1.53002 * 109.46885 * 65.40091 * 6 4 3 8 8 C 1.50697 * 109.47579 * 184.99819 * 4 3 2 9 9 O 1.21287 * 119.99734 * 347.25204 * 8 4 3 10 10 N 1.34775 * 120.00476 * 167.24995 * 8 4 3 11 11 C 1.46492 * 120.00311 * 184.85113 * 10 8 4 12 12 H 1.09006 * 115.49602 * 350.38163 * 11 10 8 13 13 C 1.52996 * 117.44475 * 205.00248 * 11 10 8 14 14 H 1.09004 * 119.54308 * 4.11760 * 13 11 10 15 15 C 1.54394 * 118.12335 * 159.21401 * 13 11 10 16 16 N 1.51830 * 102.86528 * 88.02128 * 15 13 11 17 17 C 1.36941 * 127.61043 * 140.54741 * 16 15 13 18 18 H 1.08001 * 119.99790 * 191.09063 * 17 16 15 19 19 C 1.38807 * 120.00070 * 11.09346 * 17 16 15 20 20 N 1.31619 * 120.00183 * 10.22783 * 19 17 16 21 21 Si 1.86801 * 120.00076 * 190.22936 * 19 17 16 22 22 H 1.48499 * 109.46990 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47313 * 119.99807 * 21 19 17 24 24 H 1.48500 * 109.47193 * 239.99760 * 21 19 17 25 25 C 1.48147 * 104.55156 * 320.27062 * 16 15 13 26 26 C 1.53005 * 117.44558 * 135.76043 * 11 10 8 27 27 H 1.09001 * 119.53450 * 355.88620 * 26 11 10 28 28 H 1.09000 * 109.47035 * 60.00424 * 1 2 3 29 29 H 1.09002 * 109.46758 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47654 * 300.00268 * 1 2 3 31 31 H 1.08999 * 109.47654 * 239.99732 * 2 1 3 32 32 H 1.09000 * 109.47035 * 119.99576 * 2 1 3 33 33 H 1.08999 * 109.47088 * 59.99386 * 3 2 1 34 34 H 1.09000 * 109.46833 * 299.99699 * 3 2 1 35 35 H 1.09001 * 109.47067 * 185.40167 * 6 4 3 36 36 H 1.09000 * 109.47171 * 305.40373 * 6 4 3 37 37 H 1.08994 * 109.47075 * 183.13119 * 7 6 4 38 38 H 1.08995 * 109.47144 * 303.13363 * 7 6 4 39 39 H 1.09000 * 109.46986 * 63.13630 * 7 6 4 40 40 H 0.97006 * 119.99642 * 4.85939 * 10 8 4 41 41 H 1.08996 * 110.40703 * 205.97372 * 15 13 11 42 42 H 1.08997 * 110.40472 * 328.40401 * 15 13 11 43 43 H 0.96994 * 120.00441 * 180.02562 * 20 19 17 44 44 H 1.09004 * 110.40448 * 281.07567 * 25 16 15 45 45 H 1.08997 * 110.40982 * 158.65057 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9336 0.8531 0.8410 6 6 4.0795 0.8330 -1.3082 7 6 3.6828 1.7340 -2.4795 8 6 4.0723 2.8580 0.1231 9 8 3.3085 3.7879 -0.0277 10 7 5.3704 3.0905 0.4015 11 6 5.8372 4.4606 0.6269 12 1 5.1180 5.2457 0.3933 13 6 7.3144 4.7552 0.3591 14 1 7.9532 3.9722 -0.0496 15 6 7.7306 6.2210 0.1098 16 7 7.9998 6.7390 1.5114 17 6 9.0042 7.5784 1.9136 18 1 9.1928 7.7293 2.9662 19 6 9.7800 8.2353 0.9683 20 7 9.4297 8.2144 -0.3002 21 14 11.3213 9.1490 1.4966 22 1 11.4928 9.0219 2.9662 23 1 12.5017 8.5680 0.8080 24 1 11.1943 10.5838 1.1358 25 6 6.9298 6.1389 2.3419 26 6 6.7825 4.6985 1.8062 27 1 7.0249 3.8731 2.4756 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6765 1.9564 0.8899 34 1 1.6766 1.9563 -0.8900 35 1 5.1652 0.7448 -1.2691 36 1 3.6393 -0.1548 -1.4444 37 1 3.9970 1.2724 -3.4156 38 1 2.6011 1.8673 -2.4852 39 1 4.1679 2.7042 -2.3721 40 1 5.9955 2.3505 0.4525 41 1 8.6377 6.2612 -0.4933 42 1 6.9238 6.7673 -0.3787 43 1 9.9719 8.6730 -0.9608 44 1 5.9971 6.6887 2.2154 45 1 7.2250 6.1260 3.3910 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115035543.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:48:47 Heat of formation + Delta-G solvation = -19.934491 kcal Electronic energy + Delta-G solvation = -22126.874537 eV Core-core repulsion = 18951.487476 eV Total energy + Delta-G solvation = -3175.387061 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.33619 -39.95825 -37.28362 -35.96726 -34.41246 -33.63158 -31.97597 -29.79514 -28.91603 -27.68071 -25.97879 -24.20218 -23.30112 -21.99195 -21.86345 -20.82341 -20.15285 -18.86729 -17.80097 -17.66027 -16.87179 -16.72594 -16.15956 -15.65745 -15.27515 -14.99876 -14.77736 -14.64490 -14.33494 -14.09676 -13.73818 -13.53492 -13.33195 -13.20411 -12.93128 -12.91876 -12.74995 -12.72369 -12.16539 -12.12883 -12.00567 -11.88865 -11.82761 -11.78557 -11.63514 -11.50653 -11.24057 -10.91506 -10.77551 -10.61747 -9.68186 -8.97159 -7.90296 -5.25405 1.46844 1.47490 1.58539 1.59724 2.01906 2.48577 2.85397 3.28969 3.50146 3.65299 3.78470 3.82207 3.91223 3.94649 4.12266 4.24322 4.29935 4.34811 4.39635 4.43196 4.51224 4.69217 4.72665 4.78753 4.84532 4.91372 4.94796 4.96635 5.01657 5.12760 5.17841 5.21453 5.26232 5.28660 5.39877 5.41768 5.43611 5.46273 5.55238 5.60820 5.65530 6.11527 6.57527 6.95006 7.28271 7.64805 8.43488 9.23477 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.044459 B = 0.002999 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.642477 B = 9335.060311 C = 9599.133618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.119 4.119 3 C -0.102 4.102 4 C -0.099 4.099 5 H 0.123 0.877 6 C -0.110 4.110 7 C -0.160 4.160 8 C 0.518 3.482 9 O -0.585 6.585 10 N -0.686 5.686 11 C 0.115 3.885 12 H 0.100 0.900 13 C -0.177 4.177 14 H 0.125 0.875 15 C 0.183 3.817 16 N -0.623 5.623 17 C -0.236 4.236 18 H 0.084 0.916 19 C -0.068 4.068 20 N -0.951 5.951 21 Si 0.982 3.018 22 H -0.264 1.264 23 H -0.289 1.289 24 H -0.294 1.294 25 C 0.151 3.849 26 C -0.165 4.165 27 H 0.137 0.863 28 H 0.048 0.952 29 H 0.066 0.934 30 H 0.047 0.953 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.049 0.951 34 H 0.056 0.944 35 H 0.080 0.920 36 H 0.103 0.897 37 H 0.069 0.931 38 H 0.055 0.945 39 H 0.025 0.975 40 H 0.417 0.583 41 H 0.068 0.932 42 H 0.001 0.999 43 H 0.249 0.751 44 H 0.015 0.985 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.022 -21.992 0.036 25.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.156 4.156 3 C -0.140 4.140 4 C -0.120 4.120 5 H 0.141 0.859 6 C -0.147 4.147 7 C -0.217 4.217 8 C 0.307 3.693 9 O -0.465 6.465 10 N -0.335 5.335 11 C 0.008 3.992 12 H 0.118 0.882 13 C -0.198 4.198 14 H 0.143 0.857 15 C 0.058 3.942 16 N -0.348 5.348 17 C -0.364 4.364 18 H 0.102 0.898 19 C -0.261 4.261 20 N -0.599 5.599 21 Si 0.810 3.190 22 H -0.189 1.189 23 H -0.216 1.216 24 H -0.221 1.221 25 C 0.025 3.975 26 C -0.186 4.186 27 H 0.154 0.846 28 H 0.067 0.933 29 H 0.085 0.915 30 H 0.067 0.933 31 H 0.097 0.903 32 H 0.092 0.908 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.099 0.901 36 H 0.122 0.878 37 H 0.088 0.912 38 H 0.074 0.926 39 H 0.044 0.956 40 H 0.254 0.746 41 H 0.086 0.914 42 H 0.019 0.981 43 H 0.058 0.942 44 H 0.033 0.967 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -12.390 -21.178 -0.096 24.536 hybrid contribution 1.042 1.063 -0.037 1.489 sum -11.348 -20.115 -0.133 23.095 Atomic orbital electron populations 1.21785 0.95937 1.02071 1.01470 1.21570 0.95870 0.94892 1.03254 1.21451 0.92454 0.98086 1.01985 1.21489 0.97691 0.90671 1.02149 0.85885 1.21584 1.01993 0.99990 0.91152 1.21880 1.01562 0.98931 0.99351 1.21444 0.81158 0.92750 0.73989 1.90688 1.56841 1.47552 1.51372 1.45266 1.09952 1.07273 1.71052 1.21362 0.91371 0.85858 1.00625 0.88213 1.24255 0.95544 0.99346 1.00627 0.85705 1.21530 0.97860 0.87818 0.86962 1.46435 1.29619 1.54291 1.04494 1.19479 1.06442 1.17817 0.92682 0.89821 1.25692 1.03325 1.01237 0.95800 1.70083 1.40026 1.48359 1.01453 0.84964 0.78854 0.77219 0.77978 1.18859 1.21606 1.22146 1.21193 0.90453 0.90633 0.95207 1.24287 1.03838 0.99081 0.91399 0.84570 0.93280 0.91543 0.93350 0.90341 0.90759 0.93252 0.92491 0.90146 0.87837 0.91164 0.92635 0.95588 0.74583 0.91382 0.98114 0.94160 0.96722 0.91744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.88 9.91 71.98 0.71 -1.17 16 2 C -0.12 -1.36 5.70 30.59 0.17 -1.19 16 3 C -0.10 -1.80 3.87 30.59 0.12 -1.68 16 4 C -0.10 -1.61 2.50 -11.54 -0.03 -1.64 16 5 H 0.12 1.33 8.14 -2.38 -0.02 1.31 16 6 C -0.11 -1.41 5.58 30.60 0.17 -1.24 16 7 C -0.16 -2.94 9.35 71.98 0.67 -2.26 16 8 C 0.52 13.57 5.58 87.66 0.49 14.06 16 9 O -0.59 -21.27 15.63 -3.05 -0.05 -21.32 16 10 N -0.69 -16.92 5.56 -442.54 -2.46 -19.38 16 11 C 0.12 3.86 5.98 44.99 0.27 4.13 16 12 H 0.10 4.04 7.39 -2.38 -0.02 4.03 16 13 C -0.18 -6.59 6.96 -9.89 -0.07 -6.66 16 14 H 0.13 4.07 8.14 -2.39 -0.02 4.05 16 15 C 0.18 9.19 6.00 85.80 0.52 9.71 16 16 N -0.62 -32.83 3.46 -678.17 -2.35 -35.18 16 17 C -0.24 -13.36 10.37 84.03 0.87 -12.49 16 18 H 0.08 4.52 7.85 -2.91 -0.02 4.50 16 19 C -0.07 -3.87 5.42 84.86 0.46 -3.41 16 20 N -0.95 -57.79 10.68 21.65 0.23 -57.56 16 21 Si 0.98 45.85 29.57 68.60 2.03 47.88 16 22 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 23 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 24 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 25 C 0.15 6.44 7.05 86.53 0.61 7.05 16 26 C -0.16 -5.64 7.06 -9.89 -0.07 -5.71 16 27 H 0.14 3.81 8.14 -2.39 -0.02 3.79 16 28 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.08 0.71 6.45 -2.39 -0.02 0.69 16 32 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.05 1.05 8.13 -2.39 -0.02 1.03 16 34 H 0.06 1.22 6.26 -2.39 -0.01 1.20 16 35 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.10 0.85 6.33 -2.39 -0.02 0.83 16 37 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.05 1.07 6.34 -2.39 -0.02 1.05 16 39 H 0.02 0.63 7.19 -2.39 -0.02 0.61 16 40 H 0.42 7.22 8.83 -92.70 -0.82 6.41 16 41 H 0.07 3.82 6.35 -2.39 -0.02 3.80 16 42 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 43 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 44 H 0.01 0.66 8.14 -2.38 -0.02 0.64 16 45 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 Total: -1.00 -72.38 354.68 2.45 -69.93 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: 0.15 Total: 18.15 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: 4.90 Total: -2.52 kcal Atomic # 7 Polarization: -107.54 SS G_CDS: -4.57 Total: -112.12 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: -0.05 Total: -21.32 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.88 kcal Total: -72.38 2.45 -69.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115035543.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.991 kcal (2) G-P(sol) polarization free energy of solvation -72.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds