Wall clock time and date at job start Tue Mar 31 2020 01:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47080 * 2 1 4 4 C 1.52996 * 109.47305 * 183.62293 * 3 2 1 5 5 H 1.09000 * 109.47275 * 306.75778 * 4 3 2 6 6 C 1.53002 * 109.47349 * 186.75842 * 4 3 2 7 7 C 1.53005 * 109.46929 * 64.99008 * 6 4 3 8 8 C 1.50702 * 109.47282 * 66.75387 * 4 3 2 9 9 O 1.21282 * 119.99872 * 0.02562 * 8 4 3 10 10 N 1.34773 * 120.00231 * 179.97438 * 8 4 3 11 11 C 1.46500 * 120.00134 * 180.02562 * 10 8 4 12 12 H 1.09003 * 115.51402 * 350.41812 * 11 10 8 13 13 C 1.52997 * 117.44333 * 204.99957 * 11 10 8 14 14 H 1.08997 * 119.53916 * 4.16782 * 13 11 10 15 15 C 1.54393 * 118.12097 * 160.84981 * 13 11 10 16 16 N 1.48151 * 104.61212 * 87.19745 * 15 13 11 17 17 C 1.36934 * 127.83537 * 140.39560 * 16 15 13 18 18 H 1.08006 * 119.99894 * 195.54044 * 17 16 15 19 19 C 1.38808 * 120.00513 * 15.54290 * 17 16 15 20 20 N 1.31623 * 119.99964 * 8.97253 * 19 17 16 21 21 Si 1.86798 * 120.00443 * 188.97701 * 19 17 16 22 22 H 1.48503 * 109.47287 * 89.99643 * 21 19 17 23 23 H 1.48499 * 109.47019 * 209.99779 * 21 19 17 24 24 H 1.48506 * 109.46829 * 329.99520 * 21 19 17 25 25 C 1.48146 * 104.32497 * 320.41143 * 16 15 13 26 26 C 1.53005 * 117.40676 * 135.77481 * 11 10 8 27 27 H 1.08998 * 119.53473 * 355.89856 * 26 11 10 28 28 H 1.09003 * 109.46826 * 180.02562 * 1 2 3 29 29 H 1.08991 * 109.47477 * 300.00608 * 1 2 3 30 30 H 1.09003 * 109.46945 * 60.00639 * 1 2 3 31 31 H 1.08991 * 109.47477 * 239.99392 * 2 1 3 32 32 H 1.09003 * 109.46945 * 119.99361 * 2 1 3 33 33 H 1.09002 * 109.47451 * 63.61686 * 3 2 1 34 34 H 1.09005 * 109.47084 * 303.62069 * 3 2 1 35 35 H 1.09002 * 109.47245 * 184.99081 * 6 4 3 36 36 H 1.08992 * 109.46880 * 304.98781 * 6 4 3 37 37 H 1.09001 * 109.46565 * 174.32341 * 7 6 4 38 38 H 1.08998 * 109.46661 * 294.32320 * 7 6 4 39 39 H 1.09004 * 109.47092 * 54.32534 * 7 6 4 40 40 H 0.97001 * 119.99834 * 0.02562 * 10 8 4 41 41 H 1.09002 * 110.40900 * 205.97487 * 15 13 11 42 42 H 1.08994 * 110.40711 * 328.41538 * 15 13 11 43 43 H 0.96995 * 120.00480 * 180.02562 * 20 19 17 44 44 H 1.08997 * 110.40888 * 280.80615 * 25 16 15 45 45 H 1.09000 * 110.40564 * 158.37317 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5673 1.4435 -0.0911 5 1 3.9787 0.8115 0.6959 6 6 4.0874 2.8724 0.0781 7 6 3.7656 3.3685 1.4892 8 6 3.9907 0.9107 -1.4358 9 8 3.1532 0.5647 -2.2420 10 7 5.2998 0.8196 -1.7428 11 6 5.7113 0.3022 -3.0501 12 1 4.9164 -0.1376 -3.6524 13 6 7.1035 -0.3239 -3.1543 14 1 7.7135 -0.4299 -2.2572 15 6 7.3933 -1.2593 -4.3479 16 7 7.8448 -0.3546 -5.4307 17 6 8.8480 -0.5662 -6.3383 18 1 9.2429 0.2611 -6.9094 19 6 9.3576 -1.8438 -6.5245 20 7 8.7643 -2.8770 -5.9650 21 14 10.8854 -2.0971 -7.5690 22 1 12.0930 -2.0097 -6.7091 23 1 10.8303 -3.4354 -8.2103 24 1 10.9475 -1.0477 -8.6179 25 6 6.9649 0.8310 -5.3085 26 6 6.8210 1.0543 -3.7877 27 1 7.2206 1.9749 -3.3624 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8898 30 1 -0.3633 0.5137 -0.8901 31 1 1.8934 -0.5139 -0.8898 32 1 1.8934 -0.5137 0.8901 33 1 1.7306 1.9373 0.9206 34 1 1.6247 1.9747 -0.8558 35 1 5.1665 2.8868 -0.0749 36 1 3.6081 3.5225 -0.6538 37 1 4.2230 4.3458 1.6438 38 1 2.6852 3.4500 1.6080 39 1 4.1595 2.6631 2.2210 40 1 5.9695 1.0967 -1.0981 41 1 8.1804 -1.9687 -4.0924 42 1 6.4872 -1.7866 -4.6462 43 1 9.1205 -3.7698 -6.0947 44 1 5.9919 0.6300 -5.7569 45 1 7.4288 1.6985 -5.7779 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115035546.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:48:52 Heat of formation + Delta-G solvation = -3.832466 kcal Electronic energy + Delta-G solvation = -22132.008906 eV Core-core repulsion = 18957.320081 eV Total energy + Delta-G solvation = -3174.688825 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.16453 -38.56577 -36.09859 -34.56243 -33.48320 -32.44468 -30.27946 -28.95064 -27.13822 -25.98037 -25.05970 -22.51551 -21.65943 -21.19169 -20.41480 -19.66012 -19.24584 -17.31746 -16.86670 -16.26864 -15.23281 -15.02281 -14.74859 -14.65184 -14.16652 -13.74859 -13.50376 -13.35849 -13.13730 -12.74428 -12.62160 -12.26993 -12.18399 -12.16549 -11.61008 -11.48451 -11.45136 -11.38404 -10.99107 -10.89615 -10.83856 -10.72098 -10.58564 -10.36386 -10.16873 -10.12988 -9.74463 -9.54400 -9.16666 -8.72836 -8.29996 -6.87017 -5.79724 -3.14196 2.68193 3.18091 3.38497 3.43448 3.45604 4.30603 4.43525 4.47344 4.57371 4.63958 4.96679 5.07147 5.10004 5.15151 5.19026 5.27022 5.38755 5.39030 5.46009 5.48990 5.56860 5.61373 5.70443 5.77779 5.81141 5.84196 5.88381 5.91763 5.99636 6.06776 6.15760 6.23355 6.26148 6.41684 6.54083 6.70123 6.84309 6.90786 7.35235 7.53035 7.63105 7.71329 8.20447 8.35038 9.10805 9.73471 10.50645 11.34612 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.031873 B = 0.003179 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.278487 B = 8806.392533 C = 9292.447228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.132 4.132 3 C -0.099 4.099 4 C -0.108 4.108 5 H 0.096 0.904 6 C -0.116 4.116 7 C -0.152 4.152 8 C 0.518 3.482 9 O -0.534 6.534 10 N -0.698 5.698 11 C 0.097 3.903 12 H 0.131 0.869 13 C -0.180 4.180 14 H 0.101 0.899 15 C 0.186 3.814 16 N -0.593 5.593 17 C -0.227 4.227 18 H 0.077 0.923 19 C -0.006 4.006 20 N -0.915 5.915 21 Si 0.914 3.086 22 H -0.288 1.288 23 H -0.290 1.290 24 H -0.280 1.280 25 C 0.156 3.844 26 C -0.186 4.186 27 H 0.101 0.899 28 H 0.051 0.949 29 H 0.048 0.952 30 H 0.054 0.946 31 H 0.081 0.919 32 H 0.053 0.947 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.056 0.944 38 H 0.058 0.942 39 H 0.056 0.944 40 H 0.397 0.603 41 H 0.091 0.909 42 H 0.026 0.974 43 H 0.255 0.745 44 H 0.027 0.973 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.683 10.050 16.269 21.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.170 4.170 3 C -0.137 4.137 4 C -0.130 4.130 5 H 0.114 0.886 6 C -0.154 4.154 7 C -0.209 4.209 8 C 0.304 3.696 9 O -0.410 6.410 10 N -0.347 5.347 11 C -0.008 4.008 12 H 0.148 0.852 13 C -0.201 4.201 14 H 0.119 0.881 15 C 0.060 3.940 16 N -0.317 5.317 17 C -0.355 4.355 18 H 0.095 0.905 19 C -0.203 4.203 20 N -0.561 5.561 21 Si 0.744 3.256 22 H -0.215 1.215 23 H -0.216 1.216 24 H -0.205 1.205 25 C 0.029 3.971 26 C -0.207 4.207 27 H 0.119 0.881 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.099 0.901 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.231 0.769 41 H 0.109 0.891 42 H 0.044 0.956 43 H 0.065 0.935 44 H 0.045 0.955 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.135 9.601 15.535 21.389 hybrid contribution 1.294 0.002 -0.062 1.296 sum -9.840 9.603 15.473 20.699 Atomic orbital electron populations 1.21714 0.96085 1.01363 1.01343 1.21657 0.95858 0.96769 1.02698 1.21472 0.92129 0.97854 1.02207 1.21469 0.98467 0.97838 0.95195 0.88632 1.21516 1.01138 0.94466 0.98315 1.21821 1.01928 1.01090 0.96066 1.20611 0.82129 0.77788 0.89056 1.90677 1.50982 1.48641 1.50723 1.45450 1.07241 1.65138 1.16857 1.21837 0.92891 1.00871 0.85245 0.85175 1.24683 0.96206 0.97841 1.01388 0.88062 1.21047 0.98773 0.90971 0.83240 1.45182 1.36885 1.15805 1.33793 1.19005 1.08817 0.93016 1.14701 0.90510 1.24905 0.99969 0.95194 1.00221 1.69896 1.40089 0.98114 1.48031 0.86098 0.82623 0.77219 0.79686 1.21522 1.21632 1.20531 1.21110 0.94118 0.91730 0.90137 1.24361 1.02958 0.95948 0.97449 0.88052 0.93004 0.93327 0.92696 0.90088 0.92827 0.91406 0.91118 0.91497 0.91227 0.92470 0.92256 0.92494 0.76893 0.89056 0.95639 0.93526 0.95501 0.93054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.91 37.16 0.37 -1.02 16 2 C -0.13 -1.40 5.72 -26.73 -0.15 -1.56 16 3 C -0.10 -0.96 4.22 -26.74 -0.11 -1.07 16 4 C -0.11 -1.03 2.18 -91.77 -0.20 -1.23 16 5 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 6 C -0.12 -0.92 5.35 -26.73 -0.14 -1.06 16 7 C -0.15 -0.95 9.53 37.16 0.35 -0.59 16 8 C 0.52 7.04 6.85 -10.99 -0.08 6.96 16 9 O -0.53 -9.32 13.66 5.56 0.08 -9.25 16 10 N -0.70 -9.30 5.42 -53.80 -0.29 -9.59 16 11 C 0.10 1.66 5.98 -67.93 -0.41 1.25 16 12 H 0.13 2.54 7.40 -51.93 -0.38 2.15 16 13 C -0.18 -3.41 7.06 -89.22 -0.63 -4.03 16 14 H 0.10 1.75 8.14 -51.93 -0.42 1.33 16 15 C 0.19 4.50 5.70 -2.40 -0.01 4.49 16 16 N -0.59 -15.35 3.38 -168.86 -0.57 -15.92 16 17 C -0.23 -6.36 10.35 -15.06 -0.16 -6.52 16 18 H 0.08 2.07 7.84 -52.48 -0.41 1.66 16 19 C -0.01 -0.16 5.40 -17.43 -0.09 -0.26 16 20 N -0.92 -26.89 10.86 55.49 0.60 -26.29 16 21 Si 0.91 21.96 29.56 -169.99 -5.03 16.93 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 C 0.16 3.34 7.04 -2.41 -0.02 3.32 16 26 C -0.19 -3.34 7.06 -89.22 -0.63 -3.97 16 27 H 0.10 1.63 8.14 -51.93 -0.42 1.21 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.08 1.10 6.06 -51.93 -0.31 0.78 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.52 6.40 -51.93 -0.33 0.19 16 34 H 0.07 0.79 7.89 -51.93 -0.41 0.38 16 35 H 0.07 0.49 7.43 -51.93 -0.39 0.11 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.06 0.36 6.70 -51.93 -0.35 0.01 16 39 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 40 H 0.40 4.19 8.18 -40.82 -0.33 3.85 16 41 H 0.09 2.45 6.51 -51.93 -0.34 2.11 16 42 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 44 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 355.11 15.07 5.35 5.35 Total: -1.00 -31.37 355.11 -9.65 -41.03 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -7.89 Total: 3.02 kcal Atomic # 6 Polarization: -3.38 SS G_CDS: -1.91 Total: -5.28 kcal Atomic # 7 Polarization: -51.54 SS G_CDS: -0.26 Total: -51.80 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: 0.08 Total: -9.25 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.03 Total: 16.93 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.37 -9.65 -41.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115035546.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.194 kcal (2) G-P(sol) polarization free energy of solvation -31.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds