Wall clock time and date at job start Tue Mar 31 2020 01:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47080 * 2 1 4 4 C 1.52996 * 109.47305 * 183.62293 * 3 2 1 5 5 H 1.09000 * 109.47275 * 306.75778 * 4 3 2 6 6 C 1.53002 * 109.47349 * 186.75842 * 4 3 2 7 7 C 1.53005 * 109.46929 * 64.99008 * 6 4 3 8 8 C 1.50702 * 109.47282 * 66.75387 * 4 3 2 9 9 O 1.21282 * 119.99872 * 0.02562 * 8 4 3 10 10 N 1.34773 * 120.00231 * 179.97438 * 8 4 3 11 11 C 1.46500 * 120.00134 * 180.02562 * 10 8 4 12 12 H 1.09003 * 115.51402 * 350.41812 * 11 10 8 13 13 C 1.52997 * 117.44333 * 204.99957 * 11 10 8 14 14 H 1.08997 * 119.53916 * 4.16782 * 13 11 10 15 15 C 1.54393 * 118.12097 * 160.84981 * 13 11 10 16 16 N 1.48151 * 104.61212 * 87.19745 * 15 13 11 17 17 C 1.36934 * 127.83537 * 140.39560 * 16 15 13 18 18 H 1.08006 * 119.99894 * 195.54044 * 17 16 15 19 19 C 1.38808 * 120.00513 * 15.54290 * 17 16 15 20 20 N 1.31623 * 119.99964 * 8.97253 * 19 17 16 21 21 Si 1.86798 * 120.00443 * 188.97701 * 19 17 16 22 22 H 1.48503 * 109.47287 * 89.99643 * 21 19 17 23 23 H 1.48499 * 109.47019 * 209.99779 * 21 19 17 24 24 H 1.48506 * 109.46829 * 329.99520 * 21 19 17 25 25 C 1.48146 * 104.32497 * 320.41143 * 16 15 13 26 26 C 1.53005 * 117.40676 * 135.77481 * 11 10 8 27 27 H 1.08998 * 119.53473 * 355.89856 * 26 11 10 28 28 H 1.09003 * 109.46826 * 180.02562 * 1 2 3 29 29 H 1.08991 * 109.47477 * 300.00608 * 1 2 3 30 30 H 1.09003 * 109.46945 * 60.00639 * 1 2 3 31 31 H 1.08991 * 109.47477 * 239.99392 * 2 1 3 32 32 H 1.09003 * 109.46945 * 119.99361 * 2 1 3 33 33 H 1.09002 * 109.47451 * 63.61686 * 3 2 1 34 34 H 1.09005 * 109.47084 * 303.62069 * 3 2 1 35 35 H 1.09002 * 109.47245 * 184.99081 * 6 4 3 36 36 H 1.08992 * 109.46880 * 304.98781 * 6 4 3 37 37 H 1.09001 * 109.46565 * 174.32341 * 7 6 4 38 38 H 1.08998 * 109.46661 * 294.32320 * 7 6 4 39 39 H 1.09004 * 109.47092 * 54.32534 * 7 6 4 40 40 H 0.97001 * 119.99834 * 0.02562 * 10 8 4 41 41 H 1.09002 * 110.40900 * 205.97487 * 15 13 11 42 42 H 1.08994 * 110.40711 * 328.41538 * 15 13 11 43 43 H 0.96995 * 120.00480 * 180.02562 * 20 19 17 44 44 H 1.08997 * 110.40888 * 280.80615 * 25 16 15 45 45 H 1.09000 * 110.40564 * 158.37317 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5673 1.4435 -0.0911 5 1 3.9787 0.8115 0.6959 6 6 4.0874 2.8724 0.0781 7 6 3.7656 3.3685 1.4892 8 6 3.9907 0.9107 -1.4358 9 8 3.1532 0.5647 -2.2420 10 7 5.2998 0.8196 -1.7428 11 6 5.7113 0.3022 -3.0501 12 1 4.9164 -0.1376 -3.6524 13 6 7.1035 -0.3239 -3.1543 14 1 7.7135 -0.4299 -2.2572 15 6 7.3933 -1.2593 -4.3479 16 7 7.8448 -0.3546 -5.4307 17 6 8.8480 -0.5662 -6.3383 18 1 9.2429 0.2611 -6.9094 19 6 9.3576 -1.8438 -6.5245 20 7 8.7643 -2.8770 -5.9650 21 14 10.8854 -2.0971 -7.5690 22 1 12.0930 -2.0097 -6.7091 23 1 10.8303 -3.4354 -8.2103 24 1 10.9475 -1.0477 -8.6179 25 6 6.9649 0.8310 -5.3085 26 6 6.8210 1.0543 -3.7877 27 1 7.2206 1.9749 -3.3624 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8898 30 1 -0.3633 0.5137 -0.8901 31 1 1.8934 -0.5139 -0.8898 32 1 1.8934 -0.5137 0.8901 33 1 1.7306 1.9373 0.9206 34 1 1.6247 1.9747 -0.8558 35 1 5.1665 2.8868 -0.0749 36 1 3.6081 3.5225 -0.6538 37 1 4.2230 4.3458 1.6438 38 1 2.6852 3.4500 1.6080 39 1 4.1595 2.6631 2.2210 40 1 5.9695 1.0967 -1.0981 41 1 8.1804 -1.9687 -4.0924 42 1 6.4872 -1.7866 -4.6462 43 1 9.1205 -3.7698 -6.0947 44 1 5.9919 0.6300 -5.7569 45 1 7.4288 1.6985 -5.7779 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115035546.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:48:51 Heat of formation + Delta-G solvation = -22.621466 kcal Electronic energy + Delta-G solvation = -22132.823658 eV Core-core repulsion = 18957.320081 eV Total energy + Delta-G solvation = -3175.503577 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.34926 -40.06463 -37.01053 -36.09162 -34.62348 -33.81391 -32.06422 -29.68781 -28.94026 -27.71085 -26.10128 -23.78633 -22.61069 -22.33512 -21.92419 -20.93571 -20.66518 -18.88621 -18.30594 -17.64787 -16.75362 -16.07319 -16.03973 -15.71789 -15.40552 -15.10095 -14.81901 -14.66439 -14.37767 -14.01932 -13.74500 -13.41072 -13.25359 -13.21708 -12.95390 -12.86712 -12.83084 -12.71264 -12.24125 -12.13759 -12.06038 -12.03607 -11.88751 -11.69666 -11.59772 -11.47216 -11.27112 -10.89296 -10.73745 -10.57528 -9.68148 -8.94658 -7.93075 -5.30591 1.46339 1.48404 1.57485 1.58844 2.01904 2.47716 2.84019 3.27255 3.54989 3.65543 3.78938 3.85030 3.92248 3.93605 4.12711 4.25210 4.33438 4.37417 4.39576 4.48999 4.54754 4.62569 4.75228 4.82348 4.88420 4.88901 4.95676 4.96557 5.00324 5.13166 5.22373 5.23568 5.26618 5.34023 5.40246 5.43520 5.46836 5.49929 5.53659 5.59684 5.62661 6.14769 6.57054 6.98431 7.28858 7.65241 8.43844 9.20806 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.031873 B = 0.003179 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.278487 B = 8806.392533 C = 9292.447228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.134 4.134 3 C -0.096 4.096 4 C -0.098 4.098 5 H 0.119 0.881 6 C -0.113 4.113 7 C -0.149 4.149 8 C 0.513 3.487 9 O -0.577 6.577 10 N -0.685 5.685 11 C 0.118 3.882 12 H 0.101 0.899 13 C -0.179 4.179 14 H 0.127 0.873 15 C 0.189 3.811 16 N -0.617 5.617 17 C -0.243 4.243 18 H 0.083 0.917 19 C -0.063 4.063 20 N -0.949 5.949 21 Si 0.984 3.016 22 H -0.282 1.282 23 H -0.295 1.295 24 H -0.267 1.267 25 C 0.148 3.852 26 C -0.168 4.168 27 H 0.136 0.864 28 H 0.051 0.949 29 H 0.068 0.932 30 H 0.043 0.957 31 H 0.044 0.956 32 H 0.068 0.932 33 H 0.096 0.904 34 H 0.050 0.950 35 H 0.076 0.924 36 H 0.058 0.942 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.066 0.934 40 H 0.416 0.584 41 H 0.060 0.940 42 H -0.007 1.007 43 H 0.250 0.750 44 H 0.016 0.984 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.143 12.143 18.595 24.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.171 4.171 3 C -0.134 4.134 4 C -0.119 4.119 5 H 0.137 0.863 6 C -0.151 4.151 7 C -0.206 4.206 8 C 0.302 3.698 9 O -0.456 6.456 10 N -0.335 5.335 11 C 0.011 3.989 12 H 0.119 0.881 13 C -0.200 4.200 14 H 0.145 0.855 15 C 0.063 3.937 16 N -0.341 5.341 17 C -0.371 4.371 18 H 0.101 0.899 19 C -0.257 4.257 20 N -0.596 5.596 21 Si 0.811 3.189 22 H -0.209 1.209 23 H -0.221 1.221 24 H -0.192 1.192 25 C 0.023 3.977 26 C -0.189 4.189 27 H 0.153 0.847 28 H 0.070 0.930 29 H 0.087 0.913 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.086 0.914 33 H 0.114 0.886 34 H 0.069 0.931 35 H 0.095 0.905 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.253 0.747 41 H 0.078 0.922 42 H 0.011 0.989 43 H 0.059 0.941 44 H 0.034 0.966 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.596 11.742 17.898 23.885 hybrid contribution 1.022 -0.656 -0.818 1.464 sum -9.574 11.087 17.080 22.501 Atomic orbital electron populations 1.21708 0.95364 1.01567 1.01769 1.21642 0.96627 0.97289 1.01575 1.21480 0.92161 0.97085 1.02674 1.21512 0.98425 0.99229 0.92726 0.86324 1.21524 1.01526 0.92761 0.99320 1.21806 1.02282 1.01661 0.94853 1.21473 0.81446 0.76691 0.90187 1.90677 1.52123 1.50358 1.52457 1.45282 1.07934 1.64696 1.15594 1.21335 0.91137 0.99741 0.86701 0.88117 1.24358 0.98319 0.96842 1.00464 0.85514 1.20775 0.96162 0.91473 0.85260 1.45490 1.37257 1.17224 1.34123 1.19418 1.09287 0.93407 1.15034 0.89895 1.25790 1.03059 0.94923 1.01886 1.70102 1.41637 0.98257 1.49617 0.85009 0.78780 0.76892 0.78207 1.20900 1.22149 1.19170 1.21244 0.92910 0.90668 0.92928 1.24268 1.03161 0.96570 0.94897 0.84664 0.92987 0.91288 0.93826 0.93692 0.91351 0.88603 0.93138 0.90531 0.92302 0.91781 0.91983 0.91475 0.74650 0.92176 0.98875 0.94059 0.96645 0.91809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 9.91 71.98 0.71 -1.91 16 2 C -0.13 -2.71 5.72 30.59 0.18 -2.53 16 3 C -0.10 -1.68 4.22 30.59 0.13 -1.55 16 4 C -0.10 -1.61 2.18 -11.54 -0.03 -1.64 16 5 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 6 C -0.11 -1.42 5.35 30.60 0.16 -1.25 16 7 C -0.15 -1.28 9.53 71.98 0.69 -0.60 16 8 C 0.51 13.34 6.85 87.66 0.60 13.94 16 9 O -0.58 -20.51 13.66 -3.04 -0.04 -20.55 16 10 N -0.68 -16.83 5.42 -442.53 -2.40 -19.23 16 11 C 0.12 3.95 5.98 44.99 0.27 4.22 16 12 H 0.10 4.07 7.40 -2.39 -0.02 4.05 16 13 C -0.18 -6.65 7.06 -9.89 -0.07 -6.72 16 14 H 0.13 4.10 8.14 -2.39 -0.02 4.08 16 15 C 0.19 9.55 5.70 86.53 0.49 10.04 16 16 N -0.62 -32.59 3.38 -688.14 -2.33 -34.92 16 17 C -0.24 -13.79 10.35 84.03 0.87 -12.92 16 18 H 0.08 4.47 7.84 -2.91 -0.02 4.45 16 19 C -0.06 -3.61 5.40 84.86 0.46 -3.15 16 20 N -0.95 -57.74 10.86 21.65 0.24 -57.50 16 21 Si 0.98 45.67 29.56 68.60 2.03 47.69 16 22 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 23 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 24 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 25 C 0.15 6.36 7.04 86.53 0.61 6.97 16 26 C -0.17 -5.76 7.06 -9.89 -0.07 -5.83 16 27 H 0.14 3.81 8.14 -2.39 -0.02 3.79 16 28 H 0.05 0.90 8.14 -2.39 -0.02 0.89 16 29 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.04 1.24 6.06 -2.39 -0.01 1.23 16 32 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.10 1.15 6.40 -2.39 -0.02 1.14 16 34 H 0.05 1.09 7.89 -2.38 -0.02 1.08 16 35 H 0.08 0.83 7.43 -2.39 -0.02 0.81 16 36 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 38 H 0.06 0.51 6.70 -2.39 -0.02 0.49 16 39 H 0.07 0.47 8.14 -2.38 -0.02 0.45 16 40 H 0.42 7.27 8.18 -92.71 -0.76 6.51 16 41 H 0.06 3.38 6.51 -2.39 -0.02 3.37 16 42 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 43 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 44 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 45 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 Total: -1.00 -71.49 355.11 2.70 -68.79 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: 0.20 Total: 18.65 kcal Atomic # 6 Polarization: -7.94 SS G_CDS: 5.00 Total: -2.93 kcal Atomic # 7 Polarization: -107.16 SS G_CDS: -4.49 Total: -111.65 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: -0.04 Total: -20.55 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.69 kcal Total: -71.49 2.70 -68.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115035546.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.168 kcal (2) G-P(sol) polarization free energy of solvation -71.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds