Wall clock time and date at job start Tue Mar 31 2020 02:35:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.50698 * 120.00295 * 2 1 4 4 C 1.32997 * 119.99556 * 180.02562 * 2 1 3 5 5 C 1.47097 * 120.00337 * 3.79407 * 4 2 1 6 6 O 1.21613 * 119.99944 * 3.90228 * 5 4 2 7 7 N 1.34775 * 119.99993 * 183.89881 * 5 4 2 8 8 C 1.46502 * 119.99888 * 179.97438 * 7 5 4 9 9 C 1.53004 * 109.47052 * 175.35355 * 8 7 5 10 10 N 1.46500 * 109.46881 * 55.17116 * 9 8 7 11 11 C 1.36929 * 120.00097 * 63.65421 * 10 9 8 12 12 H 1.07997 * 120.00356 * 354.89050 * 11 10 9 13 13 C 1.38818 * 120.00227 * 174.88781 * 11 10 9 14 14 N 1.31620 * 119.99776 * 359.97438 * 13 11 10 15 15 Si 1.86792 * 120.00097 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47340 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47096 * 119.99950 * 15 13 11 18 18 H 1.48499 * 109.47118 * 239.99875 * 15 13 11 19 19 C 1.52999 * 109.46986 * 175.17089 * 9 8 7 20 20 C 1.53004 * 109.46986 * 179.97438 * 19 9 8 21 21 C 1.53001 * 109.47104 * 300.00308 * 20 19 9 22 22 C 1.52996 * 109.47618 * 59.99462 * 21 20 19 23 23 C 1.52999 * 109.47639 * 300.00438 * 22 21 20 24 24 H 1.09001 * 109.46665 * 236.39732 * 1 2 3 25 25 H 1.09005 * 109.47113 * 356.39335 * 1 2 3 26 26 H 1.08997 * 109.47621 * 116.39467 * 1 2 3 27 27 H 1.09001 * 109.47216 * 270.00895 * 3 2 1 28 28 H 1.08999 * 109.46729 * 30.00623 * 3 2 1 29 29 H 1.08998 * 109.47439 * 150.00205 * 3 2 1 30 30 H 1.08002 * 119.99790 * 183.79981 * 4 2 1 31 31 H 0.97002 * 119.99923 * 359.97438 * 7 5 4 32 32 H 1.09002 * 109.46996 * 55.36170 * 8 7 5 33 33 H 1.08993 * 109.47492 * 295.35253 * 8 7 5 34 34 H 0.97009 * 119.99386 * 243.92495 * 10 9 8 35 35 H 0.97001 * 120.00339 * 180.02562 * 14 13 11 36 36 H 1.08992 * 109.47417 * 300.00137 * 19 9 8 37 37 H 1.08998 * 109.47371 * 60.00448 * 19 9 8 38 38 H 1.08994 * 109.47379 * 180.02562 * 20 19 9 39 39 H 1.09004 * 109.46874 * 59.99652 * 20 19 9 40 40 H 1.09004 * 109.46720 * 299.99439 * 21 20 19 41 41 H 1.09001 * 109.47226 * 180.02562 * 21 20 19 42 42 H 1.08995 * 109.47124 * 179.97438 * 22 21 20 43 43 H 1.09010 * 109.46428 * 60.00377 * 22 21 20 44 44 H 1.09004 * 109.46688 * 300.00016 * 23 22 21 45 45 H 1.08994 * 109.47696 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2606 1.3050 0.0000 4 6 2.1719 -1.1518 -0.0005 5 6 1.4388 -2.4243 -0.0854 6 8 0.2309 -2.4219 -0.2265 7 7 2.1058 -3.5928 -0.0068 8 6 1.3756 -4.8601 -0.0908 9 6 2.3702 -6.0227 -0.0917 10 7 3.2343 -5.9270 1.0875 11 6 2.6956 -6.0362 2.3417 12 1 1.6253 -6.1100 2.4652 13 6 3.5253 -6.0521 3.4545 14 7 4.8298 -5.9628 3.3041 15 14 2.7905 -6.2018 5.1653 16 1 1.3114 -6.2871 5.0631 17 1 3.3131 -7.4263 5.8231 18 1 3.1627 -5.0104 5.9698 19 6 1.6060 -7.3477 -0.0578 20 6 2.6006 -8.5103 -0.0594 21 6 3.4566 -8.4475 -1.3260 22 6 4.2208 -7.1224 -1.3599 23 6 3.2263 -5.9598 -1.3583 24 1 -0.3633 -0.5688 0.8560 25 1 -0.3633 1.0257 0.0646 26 1 -0.3634 -0.4568 -0.9205 27 1 2.4421 1.6198 -1.0277 28 1 1.6715 2.0646 0.5139 29 1 3.2130 1.1747 0.5138 30 1 3.2501 -1.1529 0.0615 31 1 3.0693 -3.5947 0.1054 32 1 0.7904 -4.8820 -1.0101 33 1 0.7091 -4.9529 0.7666 34 1 4.1874 -5.7824 0.9799 35 1 5.4097 -5.9743 4.0816 36 1 0.9958 -7.3923 0.8442 37 1 0.9631 -7.4189 -0.9352 38 1 2.0562 -9.4543 -0.0358 39 1 3.2439 -8.4393 0.8177 40 1 2.8134 -8.5185 -2.2031 41 1 4.1649 -9.2760 -1.3273 42 1 4.8309 -7.0779 -2.2620 43 1 4.8641 -7.0516 -0.4827 44 1 2.5830 -6.0308 -2.2355 45 1 3.7707 -5.0158 -1.3821 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115392489.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:35:43 Heat of formation + Delta-G solvation = -34.869089 kcal Electronic energy + Delta-G solvation = -23125.117332 eV Core-core repulsion = 19949.082659 eV Total energy + Delta-G solvation = -3176.034674 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.55655 -38.49095 -35.40277 -34.23503 -33.21356 -31.17885 -30.21550 -28.78242 -27.88597 -27.53314 -24.96904 -23.77490 -22.13389 -20.95064 -20.10180 -18.67452 -18.10632 -17.08809 -16.56105 -15.33846 -15.08802 -14.71863 -14.36939 -14.02040 -14.00632 -13.71328 -13.53780 -13.52663 -13.09358 -12.75185 -12.34560 -12.25697 -11.91684 -11.81909 -11.68017 -11.60678 -11.52273 -11.41513 -11.08638 -10.88193 -10.75199 -10.51695 -10.13100 -10.02242 -9.76987 -9.60933 -9.29387 -9.16147 -8.98385 -8.86063 -8.23995 -6.99139 -5.79511 -3.07821 1.63991 3.41631 3.49628 3.50012 3.74336 3.91064 4.57890 4.92165 4.98253 5.22661 5.28963 5.31421 5.39400 5.46476 5.57461 5.62494 5.63676 5.75830 5.77221 5.82624 5.86071 6.00767 6.01740 6.07399 6.14624 6.19247 6.21822 6.26660 6.33674 6.47800 6.53444 6.62556 6.64700 6.72131 6.82312 6.84621 6.86006 7.01876 7.18330 7.22903 7.73145 8.20498 8.38753 8.83005 9.51354 10.04622 10.41136 11.42703 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.012650 B = 0.006057 C = 0.004690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2212.878509 B = 4621.588787 C = 5968.776473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.050 4.050 3 C -0.123 4.123 4 C -0.222 4.222 5 C 0.538 3.462 6 O -0.560 6.560 7 N -0.697 5.697 8 C 0.116 3.884 9 C 0.191 3.809 10 N -0.709 5.709 11 C -0.226 4.226 12 H 0.069 0.931 13 C -0.010 4.010 14 N -0.932 5.932 15 Si 0.899 3.101 16 H -0.281 1.281 17 H -0.293 1.293 18 H -0.294 1.294 19 C -0.114 4.114 20 C -0.109 4.109 21 C -0.112 4.112 22 C -0.115 4.115 23 C -0.113 4.113 24 H 0.078 0.922 25 H 0.046 0.954 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.123 0.877 31 H 0.403 0.597 32 H 0.051 0.949 33 H 0.061 0.939 34 H 0.384 0.616 35 H 0.253 0.747 36 H 0.063 0.937 37 H 0.044 0.956 38 H 0.043 0.957 39 H 0.083 0.917 40 H 0.048 0.952 41 H 0.051 0.949 42 H 0.048 0.952 43 H 0.074 0.926 44 H 0.058 0.942 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.510 6.027 -10.194 12.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.052 4.052 3 C -0.180 4.180 4 C -0.243 4.243 5 C 0.327 3.673 6 O -0.442 6.442 7 N -0.346 5.346 8 C -0.011 4.011 9 C 0.099 3.901 10 N -0.351 5.351 11 C -0.358 4.358 12 H 0.087 0.913 13 C -0.206 4.206 14 N -0.581 5.581 15 Si 0.731 3.269 16 H -0.207 1.207 17 H -0.220 1.220 18 H -0.221 1.221 19 C -0.154 4.154 20 C -0.147 4.147 21 C -0.150 4.150 22 C -0.153 4.153 23 C -0.151 4.151 24 H 0.097 0.903 25 H 0.065 0.935 26 H 0.101 0.899 27 H 0.093 0.907 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.141 0.859 31 H 0.238 0.762 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.219 0.781 35 H 0.063 0.937 36 H 0.082 0.918 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.102 0.898 40 H 0.067 0.933 41 H 0.069 0.931 42 H 0.067 0.933 43 H 0.093 0.907 44 H 0.076 0.924 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.437 5.950 -10.131 12.241 hybrid contribution 0.530 -0.114 1.206 1.323 sum -2.906 5.836 -8.924 11.052 Atomic orbital electron populations 1.20977 0.91002 1.00404 1.04362 1.22459 0.96780 0.94333 0.91630 1.20975 1.00078 0.94450 1.02484 1.22485 1.00130 0.92393 1.09324 1.18487 0.87195 0.84492 0.77151 1.90713 1.14271 1.87957 1.51292 1.45697 1.11631 1.05242 1.72050 1.21838 0.95207 0.83762 1.00243 1.19827 0.90555 0.91739 0.88027 1.42442 1.06519 1.86210 0.99957 1.19121 0.91792 1.41557 0.83298 0.91292 1.24658 0.95273 1.03090 0.97534 1.69653 1.01768 1.57825 1.28809 0.86233 0.78184 0.77135 0.85370 1.20663 1.22010 1.22101 1.21778 0.97617 0.95547 1.00435 1.21374 0.98077 0.96513 0.98733 1.21468 0.98382 0.97045 0.98071 1.21472 0.97867 0.94492 1.01462 1.21681 0.97917 0.98207 0.97287 0.90328 0.93506 0.89941 0.90680 0.91354 0.91249 0.85932 0.76184 0.93028 0.92024 0.78096 0.93701 0.91793 0.93776 0.93823 0.89805 0.93282 0.93069 0.93350 0.90714 0.92354 0.92451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.50 8.33 36.01 0.30 -1.20 16 2 C -0.05 -0.65 6.11 -101.17 -0.62 -1.27 16 3 C -0.12 -1.17 9.99 36.00 0.36 -0.81 16 4 C -0.22 -3.29 9.63 -37.81 -0.36 -3.65 16 5 C 0.54 9.68 7.71 -12.67 -0.10 9.58 16 6 O -0.56 -11.34 13.13 5.27 0.07 -11.27 16 7 N -0.70 -12.44 5.08 -61.49 -0.31 -12.76 16 8 C 0.12 2.15 4.39 -4.04 -0.02 2.13 16 9 C 0.19 3.42 0.41 -131.81 -0.05 3.37 16 10 N -0.71 -15.44 3.40 -47.23 -0.16 -15.60 16 11 C -0.23 -5.73 8.70 -15.06 -0.13 -5.86 16 12 H 0.07 1.78 6.76 -52.49 -0.35 1.43 16 13 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 14 N -0.93 -26.42 13.06 55.49 0.73 -25.70 16 15 Si 0.90 22.04 29.55 -169.99 -5.02 17.01 16 16 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 17 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 18 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 19 C -0.11 -1.99 4.50 -26.73 -0.12 -2.11 16 20 C -0.11 -1.87 5.77 -26.73 -0.15 -2.02 16 21 C -0.11 -1.67 5.92 -26.73 -0.16 -1.82 16 22 C -0.12 -1.76 5.75 -26.73 -0.15 -1.92 16 23 C -0.11 -1.75 4.64 -26.73 -0.12 -1.87 16 24 H 0.08 1.22 7.34 -51.93 -0.38 0.84 16 25 H 0.05 0.50 7.92 -51.93 -0.41 0.09 16 26 H 0.08 1.22 7.12 -51.93 -0.37 0.85 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.07 0.57 8.02 -51.93 -0.42 0.15 16 29 H 0.07 0.63 8.06 -51.93 -0.42 0.21 16 30 H 0.12 1.59 8.05 -52.49 -0.42 1.17 16 31 H 0.40 7.01 7.38 -40.82 -0.30 6.71 16 32 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.06 1.30 7.54 -51.93 -0.39 0.91 16 34 H 0.38 8.99 6.67 -40.82 -0.27 8.72 16 35 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 36 H 0.06 1.23 7.18 -51.93 -0.37 0.86 16 37 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.08 1.72 7.60 -51.93 -0.39 1.33 16 40 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.07 1.33 6.95 -51.92 -0.36 0.96 16 44 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 45 H 0.06 0.87 7.27 -51.93 -0.38 0.49 16 LS Contribution 350.21 15.07 5.28 5.28 Total: -1.00 -28.60 350.21 -8.62 -37.21 By element: Atomic # 1 Polarization: 21.41 SS G_CDS: -7.76 Total: 13.65 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: -1.43 Total: -7.83 kcal Atomic # 7 Polarization: -54.31 SS G_CDS: 0.25 Total: -54.05 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.07 Total: -11.27 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -28.60 -8.62 -37.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115392489.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.343 kcal (2) G-P(sol) polarization free energy of solvation -28.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds