Wall clock time and date at job start Tue Mar 31 2020 02:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.50698 * 120.00295 * 2 1 4 4 C 1.32997 * 119.99556 * 180.02562 * 2 1 3 5 5 C 1.47097 * 120.00337 * 3.79407 * 4 2 1 6 6 O 1.21613 * 119.99944 * 3.90228 * 5 4 2 7 7 N 1.34775 * 119.99993 * 183.89881 * 5 4 2 8 8 C 1.46502 * 119.99888 * 179.97438 * 7 5 4 9 9 C 1.53004 * 109.47052 * 175.35355 * 8 7 5 10 10 N 1.46500 * 109.46881 * 55.17116 * 9 8 7 11 11 C 1.36929 * 120.00097 * 63.65421 * 10 9 8 12 12 H 1.07997 * 120.00356 * 354.89050 * 11 10 9 13 13 C 1.38818 * 120.00227 * 174.88781 * 11 10 9 14 14 N 1.31620 * 119.99776 * 359.97438 * 13 11 10 15 15 Si 1.86792 * 120.00097 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47340 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47096 * 119.99950 * 15 13 11 18 18 H 1.48499 * 109.47118 * 239.99875 * 15 13 11 19 19 C 1.52999 * 109.46986 * 175.17089 * 9 8 7 20 20 C 1.53004 * 109.46986 * 179.97438 * 19 9 8 21 21 C 1.53001 * 109.47104 * 300.00308 * 20 19 9 22 22 C 1.52996 * 109.47618 * 59.99462 * 21 20 19 23 23 C 1.52999 * 109.47639 * 300.00438 * 22 21 20 24 24 H 1.09001 * 109.46665 * 236.39732 * 1 2 3 25 25 H 1.09005 * 109.47113 * 356.39335 * 1 2 3 26 26 H 1.08997 * 109.47621 * 116.39467 * 1 2 3 27 27 H 1.09001 * 109.47216 * 270.00895 * 3 2 1 28 28 H 1.08999 * 109.46729 * 30.00623 * 3 2 1 29 29 H 1.08998 * 109.47439 * 150.00205 * 3 2 1 30 30 H 1.08002 * 119.99790 * 183.79981 * 4 2 1 31 31 H 0.97002 * 119.99923 * 359.97438 * 7 5 4 32 32 H 1.09002 * 109.46996 * 55.36170 * 8 7 5 33 33 H 1.08993 * 109.47492 * 295.35253 * 8 7 5 34 34 H 0.97009 * 119.99386 * 243.92495 * 10 9 8 35 35 H 0.97001 * 120.00339 * 180.02562 * 14 13 11 36 36 H 1.08992 * 109.47417 * 300.00137 * 19 9 8 37 37 H 1.08998 * 109.47371 * 60.00448 * 19 9 8 38 38 H 1.08994 * 109.47379 * 180.02562 * 20 19 9 39 39 H 1.09004 * 109.46874 * 59.99652 * 20 19 9 40 40 H 1.09004 * 109.46720 * 299.99439 * 21 20 19 41 41 H 1.09001 * 109.47226 * 180.02562 * 21 20 19 42 42 H 1.08995 * 109.47124 * 179.97438 * 22 21 20 43 43 H 1.09010 * 109.46428 * 60.00377 * 22 21 20 44 44 H 1.09004 * 109.46688 * 300.00016 * 23 22 21 45 45 H 1.08994 * 109.47696 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2606 1.3050 0.0000 4 6 2.1719 -1.1518 -0.0005 5 6 1.4388 -2.4243 -0.0854 6 8 0.2309 -2.4219 -0.2265 7 7 2.1058 -3.5928 -0.0068 8 6 1.3756 -4.8601 -0.0908 9 6 2.3702 -6.0227 -0.0917 10 7 3.2343 -5.9270 1.0875 11 6 2.6956 -6.0362 2.3417 12 1 1.6253 -6.1100 2.4652 13 6 3.5253 -6.0521 3.4545 14 7 4.8298 -5.9628 3.3041 15 14 2.7905 -6.2018 5.1653 16 1 1.3114 -6.2871 5.0631 17 1 3.3131 -7.4263 5.8231 18 1 3.1627 -5.0104 5.9698 19 6 1.6060 -7.3477 -0.0578 20 6 2.6006 -8.5103 -0.0594 21 6 3.4566 -8.4475 -1.3260 22 6 4.2208 -7.1224 -1.3599 23 6 3.2263 -5.9598 -1.3583 24 1 -0.3633 -0.5688 0.8560 25 1 -0.3633 1.0257 0.0646 26 1 -0.3634 -0.4568 -0.9205 27 1 2.4421 1.6198 -1.0277 28 1 1.6715 2.0646 0.5139 29 1 3.2130 1.1747 0.5138 30 1 3.2501 -1.1529 0.0615 31 1 3.0693 -3.5947 0.1054 32 1 0.7904 -4.8820 -1.0101 33 1 0.7091 -4.9529 0.7666 34 1 4.1874 -5.7824 0.9799 35 1 5.4097 -5.9743 4.0816 36 1 0.9958 -7.3923 0.8442 37 1 0.9631 -7.4189 -0.9352 38 1 2.0562 -9.4543 -0.0358 39 1 3.2439 -8.4393 0.8177 40 1 2.8134 -8.5185 -2.2031 41 1 4.1649 -9.2760 -1.3273 42 1 4.8309 -7.0779 -2.2620 43 1 4.8641 -7.0516 -0.4827 44 1 2.5830 -6.0308 -2.2355 45 1 3.7707 -5.0158 -1.3821 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115392489.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:35:42 Heat of formation + Delta-G solvation = -51.358013 kcal Electronic energy + Delta-G solvation = -23125.832346 eV Core-core repulsion = 19949.082659 eV Total energy + Delta-G solvation = -3176.749687 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.98705 -39.90120 -36.53647 -35.69030 -34.99877 -32.83790 -31.55999 -30.45265 -28.99082 -28.58600 -26.32945 -25.70908 -23.49443 -22.24293 -21.51830 -19.99453 -19.54846 -18.96151 -17.86568 -16.87543 -16.53277 -16.16509 -15.92356 -15.62308 -15.26496 -15.16272 -14.84529 -14.67321 -14.42425 -14.27022 -13.52331 -13.40627 -13.30577 -13.23377 -13.12551 -12.91434 -12.83913 -12.63397 -12.59442 -12.48467 -12.38310 -12.03716 -11.88451 -11.67724 -11.31971 -11.09089 -10.79065 -10.70156 -10.50833 -10.18557 -9.65014 -8.90805 -7.88261 -5.12261 0.48405 1.42563 1.46219 1.52268 2.38315 2.53420 2.60423 3.44853 3.81370 3.88863 3.93745 3.96425 4.03121 4.14225 4.34302 4.41003 4.48668 4.59894 4.67274 4.72135 4.75883 4.77002 4.81460 4.83206 4.91145 4.93638 4.97117 5.06897 5.07647 5.17959 5.19660 5.21788 5.47060 5.49819 5.51361 5.56468 5.60282 5.62571 5.66148 5.76424 5.81258 6.35000 6.78662 7.41513 7.43722 8.16579 8.42830 9.34522 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.012650 B = 0.006057 C = 0.004690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2212.878509 B = 4621.588787 C = 5968.776473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.032 4.032 3 C -0.121 4.121 4 C -0.250 4.250 5 C 0.530 3.470 6 O -0.590 6.590 7 N -0.698 5.698 8 C 0.124 3.876 9 C 0.189 3.811 10 N -0.708 5.708 11 C -0.204 4.204 12 H 0.060 0.940 13 C -0.065 4.065 14 N -0.961 5.961 15 Si 0.946 3.054 16 H -0.278 1.278 17 H -0.297 1.297 18 H -0.300 1.300 19 C -0.113 4.113 20 C -0.106 4.106 21 C -0.107 4.107 22 C -0.112 4.112 23 C -0.107 4.107 24 H 0.053 0.947 25 H 0.078 0.922 26 H 0.068 0.932 27 H 0.095 0.905 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.140 0.860 31 H 0.405 0.595 32 H 0.063 0.937 33 H 0.028 0.972 34 H 0.377 0.623 35 H 0.246 0.754 36 H 0.037 0.963 37 H 0.071 0.929 38 H 0.057 0.943 39 H 0.041 0.959 40 H 0.073 0.927 41 H 0.059 0.941 42 H 0.075 0.925 43 H 0.043 0.957 44 H 0.081 0.919 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.602 7.045 -12.148 14.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.034 4.034 3 C -0.177 4.177 4 C -0.270 4.270 5 C 0.321 3.679 6 O -0.475 6.475 7 N -0.347 5.347 8 C -0.003 4.003 9 C 0.098 3.902 10 N -0.349 5.349 11 C -0.336 4.336 12 H 0.078 0.922 13 C -0.257 4.257 14 N -0.612 5.612 15 Si 0.778 3.222 16 H -0.204 1.204 17 H -0.224 1.224 18 H -0.228 1.228 19 C -0.153 4.153 20 C -0.144 4.144 21 C -0.145 4.145 22 C -0.150 4.150 23 C -0.144 4.144 24 H 0.071 0.929 25 H 0.097 0.903 26 H 0.086 0.914 27 H 0.114 0.886 28 H 0.103 0.897 29 H 0.095 0.905 30 H 0.158 0.842 31 H 0.241 0.759 32 H 0.081 0.919 33 H 0.046 0.954 34 H 0.211 0.789 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.090 0.910 38 H 0.076 0.924 39 H 0.060 0.940 40 H 0.092 0.908 41 H 0.078 0.922 42 H 0.093 0.907 43 H 0.062 0.938 44 H 0.100 0.900 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.553 6.964 -12.108 14.413 hybrid contribution 0.436 -0.382 1.742 1.836 sum -3.118 6.582 -10.366 12.668 Atomic orbital electron populations 1.20945 0.91626 1.01752 1.02462 1.22881 0.96653 0.95574 0.88317 1.21065 1.00097 0.92466 1.04096 1.22497 1.00917 0.91294 1.12337 1.19099 0.87085 0.85474 0.76280 1.90694 1.15565 1.88439 1.52762 1.45712 1.11624 1.05160 1.72180 1.21686 0.94940 0.84395 0.99247 1.20034 0.90462 0.91732 0.87935 1.42459 1.06501 1.85785 1.00113 1.19222 0.91232 1.38441 0.84738 0.92171 1.25153 0.95686 1.04919 0.99957 1.69756 1.02447 1.60249 1.28783 0.85470 0.77606 0.76440 0.82683 1.20357 1.22428 1.22773 1.21764 0.97722 0.95323 1.00456 1.21302 0.97698 0.96945 0.98414 1.21447 0.98471 0.97092 0.97449 1.21434 0.97647 0.94587 1.01301 1.21646 0.97877 0.98670 0.96240 0.92873 0.90335 0.91380 0.88616 0.89669 0.90484 0.84199 0.75945 0.91895 0.95401 0.78944 0.94449 0.94386 0.90997 0.92423 0.94042 0.90795 0.92181 0.90686 0.93807 0.90035 0.92114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.90 8.33 71.24 0.59 -2.30 16 2 C -0.03 -0.78 6.11 -17.62 -0.11 -0.89 16 3 C -0.12 -1.88 9.99 71.24 0.71 -1.17 16 4 C -0.25 -7.15 9.63 23.43 0.23 -6.92 16 5 C 0.53 19.14 7.71 86.57 0.67 19.81 16 6 O -0.59 -24.29 13.13 -4.07 -0.05 -24.34 16 7 N -0.70 -24.98 5.08 -466.71 -2.37 -27.35 16 8 C 0.12 4.60 4.39 86.38 0.38 4.98 16 9 C 0.19 6.71 0.41 3.61 0.00 6.71 16 10 N -0.71 -31.36 3.40 -303.33 -1.03 -32.39 16 11 C -0.20 -10.57 8.70 84.04 0.73 -9.84 16 12 H 0.06 3.21 6.76 -2.91 -0.02 3.19 16 13 C -0.06 -3.57 5.50 84.86 0.47 -3.11 16 14 N -0.96 -55.84 13.06 21.65 0.28 -55.56 16 15 Si 0.95 46.40 29.55 68.60 2.03 48.43 16 16 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 17 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 18 H -0.30 -14.90 7.11 99.48 0.71 -14.20 16 19 C -0.11 -3.87 4.50 30.60 0.14 -3.73 16 20 C -0.11 -3.52 5.77 30.60 0.18 -3.34 16 21 C -0.11 -2.91 5.92 30.59 0.18 -2.73 16 22 C -0.11 -3.19 5.75 30.59 0.18 -3.01 16 23 C -0.11 -3.08 4.64 30.60 0.14 -2.93 16 24 H 0.05 1.67 7.34 -2.39 -0.02 1.65 16 25 H 0.08 1.50 7.92 -2.38 -0.02 1.48 16 26 H 0.07 1.98 7.12 -2.39 -0.02 1.97 16 27 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.08 1.08 8.02 -2.39 -0.02 1.06 16 29 H 0.08 1.14 8.06 -2.39 -0.02 1.12 16 30 H 0.14 3.44 8.05 -2.91 -0.02 3.41 16 31 H 0.40 14.09 7.38 -92.71 -0.68 13.41 16 32 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.03 1.21 7.54 -2.39 -0.02 1.19 16 34 H 0.38 18.00 6.67 -92.70 -0.62 17.38 16 35 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 36 H 0.04 1.48 7.18 -2.39 -0.02 1.46 16 37 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.04 1.73 7.60 -2.38 -0.02 1.71 16 40 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 41 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.04 1.53 6.95 -2.38 -0.02 1.51 16 44 H 0.08 2.03 8.14 -2.38 -0.02 2.01 16 45 H 0.06 1.73 7.27 -2.39 -0.02 1.71 16 Total: -1.00 -63.75 350.21 3.01 -60.74 By element: Atomic # 1 Polarization: 39.29 SS G_CDS: -0.33 Total: 38.96 kcal Atomic # 6 Polarization: -12.97 SS G_CDS: 4.48 Total: -8.48 kcal Atomic # 7 Polarization: -112.19 SS G_CDS: -3.12 Total: -115.30 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: -0.05 Total: -24.34 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.43 kcal Total: -63.75 3.01 -60.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115392489.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.380 kcal (2) G-P(sol) polarization free energy of solvation -63.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds