Wall clock time and date at job start Tue Mar 31 2020 03:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 H 1.08993 * 109.47768 * 305.00075 * 3 2 1 5 5 C 1.53002 * 109.47304 * 65.00546 * 3 2 1 6 6 C 1.50709 * 109.46788 * 184.99743 * 3 2 1 7 7 O 1.21278 * 120.00020 * 0.02562 * 6 3 2 8 8 N 1.34782 * 119.99779 * 180.02562 * 6 3 2 9 9 C 1.46494 * 119.99816 * 180.02562 * 8 6 3 10 10 C 1.53944 * 113.58150 * 252.72295 * 9 8 6 11 11 C 1.52909 * 86.78391 * 220.66286 * 10 9 8 12 12 C 1.52911 * 121.13681 * 150.60977 * 11 10 9 13 13 C 1.53955 * 86.77839 * 100.82439 * 12 11 10 14 14 N 1.46495 * 113.57979 * 139.33853 * 13 12 11 15 15 C 1.36934 * 120.00475 * 107.27730 * 14 13 12 16 16 H 1.08000 * 119.99990 * 359.97438 * 15 14 13 17 17 C 1.38813 * 120.00482 * 180.02562 * 15 14 13 18 18 N 1.31622 * 119.99485 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00220 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47216 * 0.02562 * 19 17 15 21 21 H 1.48511 * 109.46998 * 119.99794 * 19 17 15 22 22 H 1.48499 * 109.47149 * 239.99857 * 19 17 15 23 23 C 1.52902 * 121.13581 * 259.17644 * 11 10 9 24 24 C 1.52912 * 88.04111 * 24.89674 * 11 10 9 25 25 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 27 27 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 28 28 H 1.08993 * 109.46955 * 120.00472 * 2 1 3 29 29 H 1.09000 * 109.47050 * 240.00301 * 2 1 3 30 30 H 1.08998 * 109.47381 * 180.02562 * 5 3 2 31 31 H 1.09006 * 109.46455 * 299.99835 * 5 3 2 32 32 H 1.09001 * 109.47430 * 59.99088 * 5 3 2 33 33 H 0.97001 * 119.99797 * 359.97438 * 8 6 3 34 34 H 1.09006 * 112.82635 * 23.91136 * 9 8 6 35 35 H 1.09007 * 113.66040 * 335.13038 * 10 9 8 36 36 H 1.08991 * 113.66876 * 106.18709 * 10 9 8 37 37 H 1.08995 * 113.66427 * 215.29209 * 12 11 10 38 38 H 1.08995 * 113.66298 * 346.35460 * 12 11 10 39 39 H 1.09004 * 113.57818 * 270.12587 * 13 12 11 40 40 H 0.97006 * 119.99751 * 287.27885 * 14 13 12 41 41 H 0.97000 * 119.99445 * 180.02562 * 18 17 15 42 42 H 1.08994 * 113.66754 * 13.64926 * 23 11 10 43 43 H 1.09007 * 113.66299 * 144.61304 * 23 11 10 44 44 H 1.09006 * 113.65994 * 220.63391 * 24 11 10 45 45 H 1.09001 * 113.66518 * 89.57406 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 1.6352 2.1265 1.3074 6 6 3.5419 1.4444 -0.1238 7 8 4.1450 0.3953 -0.2045 8 7 4.2149 2.6120 -0.1447 9 6 5.6749 2.6138 -0.2656 10 6 6.4003 2.9934 1.0381 11 6 7.3577 3.8074 0.1670 12 6 8.0508 5.0579 0.7093 13 6 9.2985 4.1769 0.9023 14 7 10.5499 4.8451 0.5367 15 6 11.4207 5.2496 1.5130 16 1 11.1849 5.0763 2.5526 17 6 12.6063 5.8832 1.1666 18 7 12.8935 6.0948 -0.1003 19 14 13.7939 6.4355 2.4985 20 1 13.2421 6.0824 3.8312 21 1 15.1010 5.7566 2.3088 22 1 13.9830 7.9060 2.4143 23 6 8.7387 3.2680 -0.2070 24 6 6.2410 3.9104 -0.8725 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.9981 3.1544 1.3072 31 1 0.5489 2.1251 1.3970 32 1 2.0698 1.5875 2.1492 33 1 3.7325 3.4510 -0.0805 34 1 6.0616 1.7083 -0.7334 35 1 5.7980 3.6020 1.7126 36 1 6.8742 2.1482 1.5371 37 1 8.1808 5.8435 -0.0349 38 1 7.6248 5.4237 1.6436 39 1 9.3451 3.6949 1.8788 40 1 10.7616 5.0011 -0.3970 41 1 13.7221 6.5372 -0.3424 42 1 8.8624 2.2042 -0.0049 43 1 9.0615 3.5493 -1.2095 44 1 6.5877 3.7977 -1.8997 45 1 5.5938 4.7767 -0.7349 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001120651149.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:09:25 Heat of formation + Delta-G solvation = -5.384456 kcal Electronic energy + Delta-G solvation = -21716.247561 eV Core-core repulsion = 18541.491437 eV Total energy + Delta-G solvation = -3174.756124 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.64644 -39.47158 -36.09742 -35.49661 -33.64801 -32.20355 -30.05362 -29.35846 -25.79404 -25.71481 -25.22142 -24.17837 -22.99268 -21.38804 -20.24208 -19.80317 -17.86168 -17.20438 -16.97040 -16.38974 -15.72781 -15.19447 -14.88353 -14.72861 -14.30404 -14.06055 -13.80601 -13.47433 -13.08963 -12.77685 -12.58062 -12.52805 -12.30993 -12.15362 -11.99740 -11.88703 -11.64980 -11.30460 -11.16036 -11.00649 -10.98389 -10.87133 -10.69886 -10.33887 -10.04352 -9.82993 -9.76271 -9.71049 -9.32445 -9.03295 -8.84806 -6.93434 -5.76828 -3.05054 2.50876 3.06470 3.43386 3.49152 3.51359 4.37077 4.44400 4.56659 4.58528 4.60628 4.72563 4.80377 4.91793 4.97222 5.02929 5.14134 5.20485 5.41527 5.43585 5.47653 5.52400 5.59375 5.62158 5.73294 5.75259 5.81150 5.91264 5.93904 5.96393 6.00157 6.03776 6.14586 6.21668 6.25314 6.38596 6.44681 6.54328 6.65997 6.95341 7.15843 7.40290 7.71720 8.11650 8.42163 9.53120 10.12126 10.46493 11.45785 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.053707 B = 0.002559 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.223761 B =10940.543648 C =11044.984865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.106 4.106 3 C -0.112 4.112 4 H 0.095 0.905 5 C -0.146 4.146 6 C 0.514 3.486 7 O -0.541 6.541 8 N -0.719 5.719 9 C 0.122 3.878 10 C -0.124 4.124 11 C -0.102 4.102 12 C -0.148 4.148 13 C 0.168 3.832 14 N -0.714 5.714 15 C -0.240 4.240 16 H 0.071 0.929 17 C -0.015 4.015 18 N -0.933 5.933 19 Si 0.907 3.093 20 H -0.280 1.280 21 H -0.292 1.292 22 H -0.292 1.292 23 C -0.129 4.129 24 C -0.130 4.130 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.053 0.947 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.399 0.601 34 H 0.113 0.887 35 H 0.082 0.918 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.054 0.946 39 H 0.074 0.926 40 H 0.385 0.615 41 H 0.254 0.746 42 H 0.060 0.940 43 H 0.081 0.919 44 H 0.072 0.928 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.586 -7.314 -0.551 26.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.144 4.144 3 C -0.134 4.134 4 H 0.113 0.887 5 C -0.203 4.203 6 C 0.301 3.699 7 O -0.418 6.418 8 N -0.369 5.369 9 C 0.018 3.982 10 C -0.162 4.162 11 C -0.103 4.103 12 C -0.190 4.190 13 C 0.056 3.944 14 N -0.352 5.352 15 C -0.372 4.372 16 H 0.089 0.911 17 C -0.211 4.211 18 N -0.581 5.581 19 Si 0.738 3.262 20 H -0.205 1.205 21 H -0.219 1.219 22 H -0.219 1.219 23 C -0.168 4.168 24 C -0.168 4.168 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.233 0.767 34 H 0.131 0.869 35 H 0.101 0.899 36 H 0.090 0.910 37 H 0.097 0.903 38 H 0.072 0.928 39 H 0.092 0.908 40 H 0.219 0.781 41 H 0.064 0.936 42 H 0.079 0.921 43 H 0.100 0.900 44 H 0.091 0.909 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -25.003 -8.040 -0.446 26.268 hybrid contribution 0.517 0.944 0.351 1.132 sum -24.487 -7.096 -0.095 25.494 Atomic orbital electron populations 1.21849 0.95538 1.01901 1.01809 1.21341 0.95257 0.94229 1.03559 1.21375 0.92081 0.99434 1.00487 0.88651 1.21830 1.02291 1.00234 0.95954 1.20735 0.89898 0.83819 0.75476 1.90700 1.70379 1.31462 1.49239 1.46106 1.07851 1.08466 1.74501 1.22624 0.78231 0.99606 0.97786 1.23127 0.97097 0.99662 0.96350 1.22079 0.92707 0.99037 0.96504 1.23635 0.99294 0.96067 0.99955 1.21538 0.85460 0.91668 0.95685 1.42429 1.17911 1.68084 1.06742 1.19358 0.98286 1.30698 0.88835 0.91072 1.24769 0.98416 1.01772 0.96159 1.69675 1.25490 1.48168 1.14806 0.86117 0.81161 0.78033 0.80891 1.20544 1.21877 1.21892 1.23209 0.93037 0.99593 1.00938 1.23173 0.97773 0.96437 0.99467 0.92479 0.92444 0.92754 0.91295 0.91143 0.92165 0.91218 0.91969 0.76703 0.86947 0.89929 0.91030 0.90315 0.92756 0.90812 0.78126 0.93561 0.92091 0.90042 0.90907 0.89937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.67 37.16 0.36 -0.53 16 2 C -0.11 -0.85 4.75 -26.73 -0.13 -0.98 16 3 C -0.11 -0.84 2.73 -91.77 -0.25 -1.09 16 4 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 5 C -0.15 -0.86 8.84 37.16 0.33 -0.53 16 6 C 0.51 5.69 7.15 -10.98 -0.08 5.61 16 7 O -0.54 -8.31 15.52 5.56 0.09 -8.23 16 8 N -0.72 -6.95 5.25 -52.85 -0.28 -7.23 16 9 C 0.12 1.43 4.24 -66.96 -0.28 1.15 16 10 C -0.12 -1.56 7.64 -26.29 -0.20 -1.76 16 11 C -0.10 -1.44 1.11 -154.71 -0.17 -1.61 16 12 C -0.15 -2.53 7.64 -26.28 -0.20 -2.73 16 13 C 0.17 3.36 4.48 -66.95 -0.30 3.06 16 14 N -0.71 -18.04 5.40 -52.47 -0.28 -18.33 16 15 C -0.24 -6.73 9.97 -15.06 -0.15 -6.88 16 16 H 0.07 1.94 7.83 -52.49 -0.41 1.52 16 17 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 18 N -0.93 -28.33 13.06 55.49 0.72 -27.61 16 19 Si 0.91 22.50 29.55 -169.99 -5.02 17.48 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 21 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 22 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 23 C -0.13 -2.15 7.59 -26.29 -0.20 -2.35 16 24 C -0.13 -1.51 7.59 -26.28 -0.20 -1.71 16 25 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 26 H 0.06 0.29 6.56 -51.93 -0.34 -0.05 16 27 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.66 7.95 -51.93 -0.41 0.24 16 30 H 0.06 0.30 7.56 -51.93 -0.39 -0.09 16 31 H 0.07 0.32 6.56 -51.93 -0.34 -0.02 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.40 2.78 8.14 -40.82 -0.33 2.44 16 34 H 0.11 1.55 7.47 -51.93 -0.39 1.16 16 35 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 38 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.07 1.49 8.10 -51.93 -0.42 1.07 16 40 H 0.38 10.30 7.92 -40.82 -0.32 9.97 16 41 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 42 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.08 1.40 8.12 -51.93 -0.42 0.98 16 44 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 45 H 0.08 0.84 8.12 -51.93 -0.42 0.42 16 LS Contribution 361.22 15.07 5.44 5.44 Total: -1.00 -32.11 361.22 -8.89 -41.00 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -7.99 Total: 8.35 kcal Atomic # 6 Polarization: -9.32 SS G_CDS: -1.57 Total: -10.89 kcal Atomic # 7 Polarization: -53.32 SS G_CDS: 0.16 Total: -53.16 kcal Atomic # 8 Polarization: -8.31 SS G_CDS: 0.09 Total: -8.23 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.11 -8.89 -41.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120651149.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.616 kcal (2) G-P(sol) polarization free energy of solvation -32.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds