Wall clock time and date at job start Tue Mar 31 2020 03:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 H 1.08993 * 109.47768 * 305.00075 * 3 2 1 5 5 C 1.53002 * 109.47304 * 65.00546 * 3 2 1 6 6 C 1.50709 * 109.46788 * 184.99743 * 3 2 1 7 7 O 1.21278 * 120.00020 * 0.02562 * 6 3 2 8 8 N 1.34782 * 119.99779 * 180.02562 * 6 3 2 9 9 C 1.46494 * 119.99816 * 180.02562 * 8 6 3 10 10 C 1.53944 * 113.58150 * 252.72295 * 9 8 6 11 11 C 1.52909 * 86.78391 * 220.66286 * 10 9 8 12 12 C 1.52911 * 121.13681 * 150.60977 * 11 10 9 13 13 C 1.53955 * 86.77839 * 100.82439 * 12 11 10 14 14 N 1.46495 * 113.57979 * 139.33853 * 13 12 11 15 15 C 1.36934 * 120.00475 * 107.27730 * 14 13 12 16 16 H 1.08000 * 119.99990 * 359.97438 * 15 14 13 17 17 C 1.38813 * 120.00482 * 180.02562 * 15 14 13 18 18 N 1.31622 * 119.99485 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00220 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47216 * 0.02562 * 19 17 15 21 21 H 1.48511 * 109.46998 * 119.99794 * 19 17 15 22 22 H 1.48499 * 109.47149 * 239.99857 * 19 17 15 23 23 C 1.52902 * 121.13581 * 259.17644 * 11 10 9 24 24 C 1.52912 * 88.04111 * 24.89674 * 11 10 9 25 25 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 27 27 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 28 28 H 1.08993 * 109.46955 * 120.00472 * 2 1 3 29 29 H 1.09000 * 109.47050 * 240.00301 * 2 1 3 30 30 H 1.08998 * 109.47381 * 180.02562 * 5 3 2 31 31 H 1.09006 * 109.46455 * 299.99835 * 5 3 2 32 32 H 1.09001 * 109.47430 * 59.99088 * 5 3 2 33 33 H 0.97001 * 119.99797 * 359.97438 * 8 6 3 34 34 H 1.09006 * 112.82635 * 23.91136 * 9 8 6 35 35 H 1.09007 * 113.66040 * 335.13038 * 10 9 8 36 36 H 1.08991 * 113.66876 * 106.18709 * 10 9 8 37 37 H 1.08995 * 113.66427 * 215.29209 * 12 11 10 38 38 H 1.08995 * 113.66298 * 346.35460 * 12 11 10 39 39 H 1.09004 * 113.57818 * 270.12587 * 13 12 11 40 40 H 0.97006 * 119.99751 * 287.27885 * 14 13 12 41 41 H 0.97000 * 119.99445 * 180.02562 * 18 17 15 42 42 H 1.08994 * 113.66754 * 13.64926 * 23 11 10 43 43 H 1.09007 * 113.66299 * 144.61304 * 23 11 10 44 44 H 1.09006 * 113.65994 * 220.63391 * 24 11 10 45 45 H 1.09001 * 113.66518 * 89.57406 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 1.6352 2.1265 1.3074 6 6 3.5419 1.4444 -0.1238 7 8 4.1450 0.3953 -0.2045 8 7 4.2149 2.6120 -0.1447 9 6 5.6749 2.6138 -0.2656 10 6 6.4003 2.9934 1.0381 11 6 7.3577 3.8074 0.1670 12 6 8.0508 5.0579 0.7093 13 6 9.2985 4.1769 0.9023 14 7 10.5499 4.8451 0.5367 15 6 11.4207 5.2496 1.5130 16 1 11.1849 5.0763 2.5526 17 6 12.6063 5.8832 1.1666 18 7 12.8935 6.0948 -0.1003 19 14 13.7939 6.4355 2.4985 20 1 13.2421 6.0824 3.8312 21 1 15.1010 5.7566 2.3088 22 1 13.9830 7.9060 2.4143 23 6 8.7387 3.2680 -0.2070 24 6 6.2410 3.9104 -0.8725 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.9981 3.1544 1.3072 31 1 0.5489 2.1251 1.3970 32 1 2.0698 1.5875 2.1492 33 1 3.7325 3.4510 -0.0805 34 1 6.0616 1.7083 -0.7334 35 1 5.7980 3.6020 1.7126 36 1 6.8742 2.1482 1.5371 37 1 8.1808 5.8435 -0.0349 38 1 7.6248 5.4237 1.6436 39 1 9.3451 3.6949 1.8788 40 1 10.7616 5.0011 -0.3970 41 1 13.7221 6.5372 -0.3424 42 1 8.8624 2.2042 -0.0049 43 1 9.0615 3.5493 -1.2095 44 1 6.5877 3.7977 -1.8997 45 1 5.5938 4.7767 -0.7349 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120651149.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:09:25 Heat of formation + Delta-G solvation = -25.671947 kcal Electronic energy + Delta-G solvation = -21717.127293 eV Core-core repulsion = 18541.491437 eV Total energy + Delta-G solvation = -3175.635856 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.71721 -40.50229 -37.33876 -36.29451 -35.25853 -33.59191 -31.50045 -30.34819 -26.77886 -26.69026 -26.37077 -25.94566 -24.12285 -22.37995 -21.45747 -20.71882 -19.45172 -18.64721 -18.00541 -17.33680 -16.90091 -16.41719 -16.08533 -15.86677 -15.58768 -15.26890 -15.05778 -14.48854 -14.33763 -13.71225 -13.62868 -13.58759 -13.41530 -13.09527 -12.97581 -12.92389 -12.85261 -12.56183 -12.49636 -12.31579 -12.23308 -12.05162 -11.90941 -11.69087 -11.57694 -11.36755 -11.06606 -10.87259 -10.81777 -10.56047 -9.96834 -8.97496 -7.95159 -5.23196 1.46697 1.47509 1.57627 1.66039 2.25815 2.56033 3.36201 3.50310 3.53141 3.66174 3.74164 3.83942 3.90978 4.00233 4.02985 4.27648 4.33012 4.40245 4.50410 4.56649 4.60976 4.64263 4.76030 4.79695 4.82838 4.93103 4.99393 5.00007 5.05077 5.05790 5.08472 5.14494 5.14648 5.23122 5.28634 5.40169 5.44464 5.51509 5.56654 5.65576 5.70542 6.27626 6.62580 7.31497 7.33012 8.10811 8.33839 9.28467 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.053707 B = 0.002559 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.223761 B =10940.543648 C =11044.984865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.107 4.107 3 C -0.105 4.105 4 H 0.120 0.880 5 C -0.143 4.143 6 C 0.509 3.491 7 O -0.591 6.591 8 N -0.705 5.705 9 C 0.128 3.872 10 C -0.119 4.119 11 C -0.091 4.091 12 C -0.136 4.136 13 C 0.146 3.854 14 N -0.729 5.729 15 C -0.241 4.241 16 H 0.075 0.925 17 C -0.080 4.080 18 N -0.971 5.971 19 Si 0.973 3.027 20 H -0.266 1.266 21 H -0.294 1.294 22 H -0.293 1.293 23 C -0.124 4.124 24 C -0.116 4.116 25 H 0.056 0.944 26 H 0.069 0.931 27 H 0.064 0.936 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.047 0.953 33 H 0.416 0.584 34 H 0.090 0.910 35 H 0.101 0.899 36 H 0.059 0.941 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.068 0.932 40 H 0.373 0.627 41 H 0.251 0.749 42 H 0.063 0.937 43 H 0.074 0.926 44 H 0.073 0.927 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.252 -6.507 0.234 28.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.145 4.145 3 C -0.126 4.126 4 H 0.138 0.862 5 C -0.200 4.200 6 C 0.297 3.703 7 O -0.472 6.472 8 N -0.356 5.356 9 C 0.023 3.977 10 C -0.157 4.157 11 C -0.092 4.092 12 C -0.177 4.177 13 C 0.037 3.963 14 N -0.367 5.367 15 C -0.373 4.373 16 H 0.093 0.907 17 C -0.272 4.272 18 N -0.622 5.622 19 Si 0.802 3.198 20 H -0.190 1.190 21 H -0.222 1.222 22 H -0.220 1.220 23 C -0.163 4.163 24 C -0.154 4.154 25 H 0.075 0.925 26 H 0.088 0.912 27 H 0.083 0.917 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.093 0.907 31 H 0.107 0.893 32 H 0.066 0.934 33 H 0.254 0.746 34 H 0.108 0.892 35 H 0.120 0.880 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.205 0.795 41 H 0.059 0.941 42 H 0.082 0.918 43 H 0.093 0.907 44 H 0.092 0.908 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -27.743 -7.225 0.369 28.671 hybrid contribution 1.297 0.624 0.115 1.444 sum -26.446 -6.600 0.485 27.261 Atomic orbital electron populations 1.21812 0.93454 1.02339 1.02908 1.21327 0.96997 0.94440 1.01753 1.21408 0.89207 0.99492 1.02474 0.86187 1.21847 1.03497 1.00512 0.94156 1.21440 0.91413 0.83204 0.74215 1.90684 1.71636 1.33293 1.51541 1.45950 1.06927 1.09110 1.73642 1.22312 0.79547 0.98813 0.97073 1.23154 0.96688 0.99147 0.96727 1.21904 0.92306 0.96922 0.98079 1.23385 0.97660 0.96386 1.00271 1.21918 0.84611 0.93208 0.96578 1.42616 1.19480 1.68893 1.05693 1.19737 0.98589 1.29423 0.89567 0.90659 1.25590 1.00409 1.02898 0.98260 1.69828 1.25902 1.49703 1.16720 0.85070 0.78630 0.77147 0.78906 1.19026 1.22175 1.21976 1.23082 0.94711 0.99134 0.99351 1.23139 0.96508 0.97150 0.98626 0.92506 0.91213 0.91668 0.93081 0.93139 0.90678 0.89318 0.93376 0.74627 0.89174 0.88018 0.92170 0.91465 0.91796 0.91351 0.79486 0.94064 0.91838 0.90716 0.90812 0.87352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.67 71.98 0.70 -0.69 16 2 C -0.11 -1.62 4.75 30.60 0.15 -1.48 16 3 C -0.10 -1.33 2.73 -11.54 -0.03 -1.36 16 4 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 5 C -0.14 -1.25 8.84 71.98 0.64 -0.61 16 6 C 0.51 10.56 7.15 87.66 0.63 11.18 16 7 O -0.59 -18.30 15.52 -3.02 -0.05 -18.35 16 8 N -0.71 -11.84 5.25 -439.52 -2.31 -14.15 16 9 C 0.13 2.78 4.24 45.63 0.19 2.97 16 10 C -0.12 -2.74 7.64 30.88 0.24 -2.51 16 11 C -0.09 -2.42 1.11 -52.31 -0.06 -2.48 16 12 C -0.14 -4.49 7.64 30.89 0.24 -4.25 16 13 C 0.15 5.85 4.48 45.63 0.20 6.06 16 14 N -0.73 -37.54 5.40 -319.93 -1.73 -39.27 16 15 C -0.24 -13.62 9.97 84.03 0.84 -12.78 16 16 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 17 C -0.08 -4.64 5.50 84.86 0.47 -4.17 16 18 N -0.97 -60.19 13.06 21.65 0.28 -59.91 16 19 Si 0.97 46.69 29.55 68.60 2.03 48.72 16 20 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 21 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 22 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 23 C -0.12 -4.13 7.59 30.88 0.23 -3.90 16 24 C -0.12 -2.39 7.59 30.89 0.23 -2.16 16 25 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 26 H 0.07 0.49 6.56 -2.39 -0.02 0.48 16 27 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.05 0.93 8.14 -2.39 -0.02 0.92 16 29 H 0.05 0.95 7.95 -2.39 -0.02 0.93 16 30 H 0.07 0.45 7.56 -2.39 -0.02 0.43 16 31 H 0.09 0.47 6.56 -2.38 -0.02 0.46 16 32 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.42 4.15 8.14 -92.71 -0.75 3.39 16 34 H 0.09 2.44 7.47 -2.38 -0.02 2.42 16 35 H 0.10 2.01 8.14 -2.38 -0.02 1.99 16 36 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 38 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.07 2.78 8.10 -2.38 -0.02 2.76 16 40 H 0.37 20.59 7.92 -92.70 -0.73 19.85 16 41 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 42 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 43 H 0.07 2.59 8.12 -2.38 -0.02 2.57 16 44 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 45 H 0.11 1.74 8.12 -2.39 -0.02 1.72 16 Total: -1.00 -71.28 361.22 2.37 -68.91 By element: Atomic # 1 Polarization: 30.74 SS G_CDS: -0.52 Total: 30.22 kcal Atomic # 6 Polarization: -20.83 SS G_CDS: 4.66 Total: -16.17 kcal Atomic # 7 Polarization: -109.57 SS G_CDS: -3.75 Total: -113.32 kcal Atomic # 8 Polarization: -18.30 SS G_CDS: -0.05 Total: -18.35 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.72 kcal Total: -71.28 2.37 -68.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120651149.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.240 kcal (2) G-P(sol) polarization free energy of solvation -71.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds