Wall clock time and date at job start Tue Mar 31 2020 02:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47466 * 2 1 4 4 C 1.52995 * 109.47158 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47224 * 180.02562 * 4 3 2 6 6 C 1.37090 * 120.00225 * 95.38966 * 5 4 3 7 7 H 1.08006 * 119.99727 * 217.61052 * 6 5 4 8 8 C 1.38951 * 120.00250 * 37.61170 * 6 5 4 9 9 N 1.31407 * 119.99755 * 19.77308 * 8 6 5 10 10 Si 1.86801 * 120.00089 * 199.77845 * 8 6 5 11 11 H 1.48498 * 109.46980 * 179.97438 * 10 8 6 12 12 H 1.48494 * 109.47132 * 300.00232 * 10 8 6 13 13 H 1.48504 * 109.46820 * 59.99945 * 10 8 6 14 14 C 1.34783 * 119.99545 * 275.39280 * 5 4 3 15 15 O 1.21289 * 120.00077 * 359.97438 * 14 5 4 16 16 C 1.50697 * 119.99576 * 179.97438 * 14 5 4 17 17 H 1.09000 * 109.49007 * 57.35516 * 16 14 5 18 18 C 1.53145 * 109.49009 * 297.30670 * 16 14 5 19 19 C 1.53378 * 108.82692 * 240.03316 * 18 16 14 20 20 C 1.53389 * 108.59970 * 301.03756 * 19 18 16 21 21 C 1.53127 * 108.84237 * 59.00260 * 20 19 18 22 22 N 1.46910 * 109.48477 * 177.41387 * 16 14 5 23 23 C 1.46943 * 111.05747 * 57.97145 * 22 16 14 24 24 C 1.53132 * 109.35423 * 61.95759 * 23 22 16 25 25 H 1.09010 * 109.46702 * 299.99819 * 1 2 3 26 26 H 1.08992 * 109.47362 * 59.99636 * 1 2 3 27 27 H 1.09003 * 109.47640 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46794 * 239.99704 * 2 1 3 29 29 H 1.09002 * 109.47189 * 120.00351 * 2 1 3 30 30 H 1.09004 * 109.46634 * 60.00219 * 3 2 1 31 31 H 1.08993 * 109.46612 * 300.00409 * 3 2 1 32 32 H 1.08999 * 109.47408 * 59.99980 * 4 3 2 33 33 H 1.09002 * 109.47197 * 300.00168 * 4 3 2 34 34 H 0.97001 * 120.00044 * 179.97438 * 9 8 6 35 35 H 1.08999 * 109.57608 * 359.83697 * 18 16 14 36 36 H 1.08999 * 109.57421 * 120.09728 * 18 16 14 37 37 H 1.09008 * 110.11484 * 179.60265 * 19 18 16 38 38 H 1.09006 * 109.57662 * 178.81291 * 20 19 18 39 39 H 1.09006 * 109.57750 * 299.19700 * 20 19 18 40 40 H 1.09001 * 109.49266 * 239.97000 * 21 20 19 41 41 H 1.09001 * 109.48883 * 119.90100 * 21 20 19 42 42 H 1.09005 * 109.49027 * 301.99531 * 23 22 16 43 43 H 1.08995 * 109.51472 * 181.93200 * 23 22 16 44 44 H 1.08994 * 109.57575 * 240.25611 * 24 23 22 45 45 H 1.08998 * 109.57563 * 119.86310 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0585 2.8236 0.0000 6 6 4.3926 3.4320 1.1821 7 1 4.1694 4.4779 1.3332 8 6 5.0185 2.7031 2.1861 9 7 5.6351 1.5797 1.8954 10 14 4.9832 3.3202 3.9489 11 1 5.7167 2.3683 4.8212 12 1 5.6292 4.6554 4.0189 13 1 3.5748 3.4270 4.4077 14 6 4.1792 3.4961 -1.1618 15 8 3.8839 2.9577 -2.2078 16 6 4.6811 4.9171 -1.1611 17 1 5.6636 4.9555 -0.6908 18 6 3.7058 5.8030 -0.3805 19 6 3.1694 6.8931 -1.3168 20 6 4.3547 7.7104 -1.8458 21 6 5.3114 6.7718 -2.5863 22 7 4.7800 5.4025 -2.5442 23 6 3.4811 5.3212 -3.2265 24 6 2.4716 6.2180 -2.5044 25 1 -0.3633 0.5139 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9563 0.8901 31 1 1.6767 1.9562 -0.8899 32 1 3.9330 0.9287 -0.8908 33 1 3.9337 0.9284 0.8891 34 1 6.0723 1.0710 2.5961 35 1 2.8775 5.1979 -0.0120 36 1 4.2241 6.2637 0.4605 37 1 2.4663 7.5328 -0.7832 38 1 3.9928 8.4776 -2.5304 39 1 4.8763 8.1795 -1.0114 40 1 6.2899 6.7972 -2.1066 41 1 5.4061 7.0934 -3.6235 42 1 3.1269 4.2904 -3.2127 43 1 3.5905 5.6544 -4.2585 44 1 1.6391 5.6140 -2.1436 45 1 2.1022 6.9792 -3.1916 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001142628967.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:09:25 Heat of formation + Delta-G solvation = -33.125664 kcal Electronic energy + Delta-G solvation = -24056.505061 eV Core-core repulsion = 20880.545988 eV Total energy + Delta-G solvation = -3175.959073 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.56028 -37.95486 -35.24675 -33.99564 -31.78476 -31.54067 -30.77696 -30.45098 -28.14472 -24.98132 -23.82203 -22.61720 -22.44635 -21.97947 -20.40779 -19.11961 -17.53160 -16.72451 -16.26779 -15.71430 -15.25605 -14.93683 -14.73125 -14.37387 -13.82318 -13.75225 -13.01198 -12.54948 -12.54157 -12.35105 -12.24886 -12.18116 -11.96963 -11.82510 -11.73992 -11.45493 -11.27288 -11.16087 -11.06346 -10.75728 -10.56695 -10.48877 -10.37497 -10.33078 -10.07443 -9.88128 -9.70478 -9.62741 -8.99002 -8.16448 -7.55101 -7.43481 -6.36545 -4.06490 3.10689 3.19558 3.20849 3.93266 4.09088 4.38499 4.85914 4.94402 4.98128 5.15122 5.21154 5.49256 5.51821 5.56296 5.57886 5.67054 5.71095 5.81184 5.82549 5.96968 6.00553 6.03684 6.08935 6.22332 6.25010 6.25603 6.37585 6.41502 6.49564 6.52205 6.53973 6.58852 6.66342 6.71141 6.76186 6.85309 6.90962 7.14563 7.39090 7.49303 7.67139 7.75739 8.00283 8.40163 9.10272 9.57401 10.00500 10.65357 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.013542 B = 0.007586 C = 0.005668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.181827 B = 3689.898861 C = 4938.612546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.127 4.127 4 C 0.120 3.880 5 N -0.437 5.437 6 C -0.346 4.346 7 H 0.095 0.905 8 C 0.046 3.954 9 N -0.858 5.858 10 Si 0.909 3.091 11 H -0.284 1.284 12 H -0.272 1.272 13 H -0.273 1.273 14 C 0.482 3.518 15 O -0.589 6.589 16 C 0.087 3.913 17 H 0.100 0.900 18 C -0.130 4.130 19 C -0.092 4.092 20 C -0.147 4.147 21 C 0.054 3.946 22 N -0.511 5.511 23 C 0.034 3.966 24 C -0.146 4.146 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.046 0.954 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.101 0.899 34 H 0.269 0.731 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.058 0.942 39 H 0.062 0.938 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.121 0.879 43 H 0.058 0.942 44 H 0.059 0.941 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.945 6.281 -2.511 8.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.157 4.157 3 C -0.166 4.166 4 C -0.004 4.004 5 N -0.155 5.155 6 C -0.474 4.474 7 H 0.112 0.888 8 C -0.161 4.161 9 N -0.494 5.494 10 Si 0.736 3.264 11 H -0.209 1.209 12 H -0.197 1.197 13 H -0.198 1.198 14 C 0.270 3.730 15 O -0.475 6.475 16 C -0.024 4.024 17 H 0.118 0.882 18 C -0.170 4.170 19 C -0.111 4.111 20 C -0.186 4.186 21 C -0.075 4.075 22 N -0.231 5.231 23 C -0.094 4.094 24 C -0.186 4.186 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.119 0.881 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.090 0.910 41 H 0.088 0.912 42 H 0.138 0.862 43 H 0.077 0.923 44 H 0.078 0.922 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.604 5.496 -3.169 7.839 hybrid contribution -0.495 0.950 1.601 1.926 sum -5.098 6.446 -1.568 8.367 Atomic orbital electron populations 1.21756 0.96700 1.00645 1.01419 1.21429 0.94909 0.97819 1.01587 1.21908 0.98090 0.95421 1.01191 1.21338 0.90823 0.84997 1.03229 1.43366 1.55467 1.11832 1.04811 1.19610 1.38898 0.97240 0.91638 0.88752 1.25371 0.94108 0.96370 1.00236 1.69939 1.30008 1.15769 1.33649 0.86288 0.78595 0.78820 0.82741 1.20917 1.19744 1.19838 1.20136 0.81027 0.88140 0.83674 1.90367 1.55505 1.70119 1.31460 1.21325 1.00063 0.93222 0.87814 0.88237 1.22223 1.00191 0.96790 0.97764 1.21213 0.96668 0.96836 0.96413 1.22255 0.97507 0.98498 1.00348 1.22197 0.97606 0.87759 0.99976 1.62200 1.26135 1.19760 1.14967 1.22681 0.87486 1.03381 0.95852 1.22262 0.99511 0.99317 0.97483 0.93108 0.93107 0.93448 0.92392 0.92307 0.92513 0.92921 0.93088 0.88065 0.92045 0.90816 0.91364 0.91181 0.92360 0.91969 0.91039 0.91180 0.86168 0.92319 0.92192 0.92779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.91 37.16 0.37 -1.73 16 2 C -0.12 -2.01 5.93 -26.73 -0.16 -2.17 16 3 C -0.13 -2.57 5.50 -26.73 -0.15 -2.72 16 4 C 0.12 2.83 4.88 -4.04 -0.02 2.81 16 5 N -0.44 -10.73 2.51 -114.81 -0.29 -11.02 16 6 C -0.35 -8.46 8.13 -14.94 -0.12 -8.58 16 7 H 0.10 2.19 4.95 -52.48 -0.26 1.93 16 8 C 0.05 1.12 4.94 -17.47 -0.09 1.03 16 9 N -0.86 -22.33 11.45 55.50 0.64 -21.69 16 10 Si 0.91 19.08 29.60 -169.99 -5.03 14.05 16 11 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 12 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 13 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 14 C 0.48 11.58 6.47 -10.98 -0.07 11.51 16 15 O -0.59 -15.20 13.23 5.55 0.07 -15.12 16 16 C 0.09 1.80 2.14 -68.79 -0.15 1.65 16 17 H 0.10 2.16 8.03 -51.93 -0.42 1.74 16 18 C -0.13 -2.36 3.58 -26.46 -0.09 -2.45 16 19 C -0.09 -1.41 3.44 -90.02 -0.31 -1.72 16 20 C -0.15 -2.01 5.75 -26.46 -0.15 -2.17 16 21 C 0.05 0.81 6.09 -3.74 -0.02 0.79 16 22 N -0.51 -9.66 4.86 -227.70 -1.11 -10.76 16 23 C 0.03 0.61 5.65 -3.73 -0.02 0.59 16 24 C -0.15 -2.31 5.75 -26.46 -0.15 -2.46 16 25 H 0.05 0.70 8.14 -51.92 -0.42 0.27 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 30 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.05 1.27 7.59 -51.93 -0.39 0.87 16 33 H 0.10 2.53 5.54 -51.93 -0.29 2.25 16 34 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 35 H 0.07 1.46 6.85 -51.93 -0.36 1.11 16 36 H 0.07 1.18 7.62 -51.93 -0.40 0.79 16 37 H 0.07 0.99 8.14 -51.92 -0.42 0.56 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.12 2.56 5.05 -51.93 -0.26 2.30 16 43 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 337.22 15.07 5.08 5.08 Total: -1.00 -27.19 337.22 -9.62 -36.82 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -7.85 Total: 8.26 kcal Atomic # 6 Polarization: -4.48 SS G_CDS: -1.14 Total: -5.61 kcal Atomic # 7 Polarization: -42.71 SS G_CDS: -0.76 Total: -43.47 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: 0.07 Total: -15.12 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.03 Total: 14.05 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -27.19 -9.62 -36.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142628967.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.690 kcal (2) G-P(sol) polarization free energy of solvation -27.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds