Wall clock time and date at job start Tue Mar 31 2020 02:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47466 * 2 1 4 4 C 1.52995 * 109.47158 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47224 * 180.02562 * 4 3 2 6 6 C 1.37090 * 120.00225 * 95.38966 * 5 4 3 7 7 H 1.08006 * 119.99727 * 217.61052 * 6 5 4 8 8 C 1.38951 * 120.00250 * 37.61170 * 6 5 4 9 9 N 1.31407 * 119.99755 * 19.77308 * 8 6 5 10 10 Si 1.86801 * 120.00089 * 199.77845 * 8 6 5 11 11 H 1.48498 * 109.46980 * 179.97438 * 10 8 6 12 12 H 1.48494 * 109.47132 * 300.00232 * 10 8 6 13 13 H 1.48504 * 109.46820 * 59.99945 * 10 8 6 14 14 C 1.34783 * 119.99545 * 275.39280 * 5 4 3 15 15 O 1.21289 * 120.00077 * 359.97438 * 14 5 4 16 16 C 1.50697 * 119.99576 * 179.97438 * 14 5 4 17 17 H 1.09000 * 109.49007 * 57.35516 * 16 14 5 18 18 C 1.53145 * 109.49009 * 297.30670 * 16 14 5 19 19 C 1.53378 * 108.82692 * 240.03316 * 18 16 14 20 20 C 1.53389 * 108.59970 * 301.03756 * 19 18 16 21 21 C 1.53127 * 108.84237 * 59.00260 * 20 19 18 22 22 N 1.46910 * 109.48477 * 177.41387 * 16 14 5 23 23 C 1.46943 * 111.05747 * 57.97145 * 22 16 14 24 24 C 1.53132 * 109.35423 * 61.95759 * 23 22 16 25 25 H 1.09010 * 109.46702 * 299.99819 * 1 2 3 26 26 H 1.08992 * 109.47362 * 59.99636 * 1 2 3 27 27 H 1.09003 * 109.47640 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46794 * 239.99704 * 2 1 3 29 29 H 1.09002 * 109.47189 * 120.00351 * 2 1 3 30 30 H 1.09004 * 109.46634 * 60.00219 * 3 2 1 31 31 H 1.08993 * 109.46612 * 300.00409 * 3 2 1 32 32 H 1.08999 * 109.47408 * 59.99980 * 4 3 2 33 33 H 1.09002 * 109.47197 * 300.00168 * 4 3 2 34 34 H 0.97001 * 120.00044 * 179.97438 * 9 8 6 35 35 H 1.08999 * 109.57608 * 359.83697 * 18 16 14 36 36 H 1.08999 * 109.57421 * 120.09728 * 18 16 14 37 37 H 1.09008 * 110.11484 * 179.60265 * 19 18 16 38 38 H 1.09006 * 109.57662 * 178.81291 * 20 19 18 39 39 H 1.09006 * 109.57750 * 299.19700 * 20 19 18 40 40 H 1.09001 * 109.49266 * 239.97000 * 21 20 19 41 41 H 1.09001 * 109.48883 * 119.90100 * 21 20 19 42 42 H 1.09005 * 109.49027 * 301.99531 * 23 22 16 43 43 H 1.08995 * 109.51472 * 181.93200 * 23 22 16 44 44 H 1.08994 * 109.57575 * 240.25611 * 24 23 22 45 45 H 1.08998 * 109.57563 * 119.86310 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0585 2.8236 0.0000 6 6 4.3926 3.4320 1.1821 7 1 4.1694 4.4779 1.3332 8 6 5.0185 2.7031 2.1861 9 7 5.6351 1.5797 1.8954 10 14 4.9832 3.3202 3.9489 11 1 5.7167 2.3683 4.8212 12 1 5.6292 4.6554 4.0189 13 1 3.5748 3.4270 4.4077 14 6 4.1792 3.4961 -1.1618 15 8 3.8839 2.9577 -2.2078 16 6 4.6811 4.9171 -1.1611 17 1 5.6636 4.9555 -0.6908 18 6 3.7058 5.8030 -0.3805 19 6 3.1694 6.8931 -1.3168 20 6 4.3547 7.7104 -1.8458 21 6 5.3114 6.7718 -2.5863 22 7 4.7800 5.4025 -2.5442 23 6 3.4811 5.3212 -3.2265 24 6 2.4716 6.2180 -2.5044 25 1 -0.3633 0.5139 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9563 0.8901 31 1 1.6767 1.9562 -0.8899 32 1 3.9330 0.9287 -0.8908 33 1 3.9337 0.9284 0.8891 34 1 6.0723 1.0710 2.5961 35 1 2.8775 5.1979 -0.0120 36 1 4.2241 6.2637 0.4605 37 1 2.4663 7.5328 -0.7832 38 1 3.9928 8.4776 -2.5304 39 1 4.8763 8.1795 -1.0114 40 1 6.2899 6.7972 -2.1066 41 1 5.4061 7.0934 -3.6235 42 1 3.1269 4.2904 -3.2127 43 1 3.5905 5.6544 -4.2585 44 1 1.6391 5.6140 -2.1436 45 1 2.1022 6.9792 -3.1916 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001142628967.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:09:24 Heat of formation + Delta-G solvation = -48.284063 kcal Electronic energy + Delta-G solvation = -24057.162379 eV Core-core repulsion = 20880.545988 eV Total energy + Delta-G solvation = -3176.616391 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.04422 -39.70471 -37.05707 -35.61584 -33.52243 -33.03047 -32.28282 -31.71604 -29.72056 -26.87971 -25.35309 -23.99312 -23.73176 -23.48795 -21.97011 -20.97578 -19.13730 -18.30943 -17.87157 -17.02546 -16.84687 -16.55209 -16.37628 -16.04596 -15.51924 -15.35405 -14.45122 -14.08493 -13.85847 -13.81361 -13.78037 -13.70499 -13.45771 -13.34241 -13.06586 -12.94955 -12.81506 -12.73432 -12.44303 -12.35041 -12.16947 -12.02423 -11.95424 -11.77709 -11.59438 -11.43242 -11.25419 -10.96349 -10.85489 -9.95397 -9.39251 -8.95683 -8.26377 -6.02205 1.43231 1.48633 1.56321 2.07909 2.32563 2.80012 3.09793 3.32572 3.73290 3.81452 3.95472 4.06459 4.13254 4.24911 4.29453 4.34463 4.39655 4.42811 4.45341 4.52286 4.58907 4.72863 4.79282 4.83312 4.87858 4.91883 4.99444 5.01750 5.04893 5.10790 5.15350 5.17119 5.28320 5.32334 5.35992 5.37477 5.41859 5.42662 5.51207 5.58329 6.09594 6.20683 6.41285 6.48755 7.18151 7.67082 8.10587 8.76621 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.013542 B = 0.007586 C = 0.005668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.181827 B = 3689.898861 C = 4938.612546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.116 4.116 3 C -0.112 4.112 4 C 0.122 3.878 5 N -0.449 5.449 6 C -0.356 4.356 7 H 0.107 0.893 8 C 0.003 3.997 9 N -0.894 5.894 10 Si 0.976 3.024 11 H -0.286 1.286 12 H -0.261 1.261 13 H -0.267 1.267 14 C 0.467 3.533 15 O -0.615 6.615 16 C 0.095 3.905 17 H 0.083 0.917 18 C -0.124 4.124 19 C -0.089 4.089 20 C -0.138 4.138 21 C 0.050 3.950 22 N -0.533 5.533 23 C 0.035 3.965 24 C -0.141 4.141 25 H 0.055 0.945 26 H 0.051 0.949 27 H 0.071 0.929 28 H 0.055 0.945 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.038 0.962 32 H 0.025 0.975 33 H 0.087 0.913 34 H 0.270 0.730 35 H 0.050 0.950 36 H 0.076 0.924 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.088 0.912 42 H 0.080 0.920 43 H 0.076 0.924 44 H 0.044 0.956 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.889 8.664 -1.909 10.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.154 4.154 3 C -0.151 4.151 4 C -0.002 4.002 5 N -0.167 5.167 6 C -0.483 4.483 7 H 0.124 0.876 8 C -0.200 4.200 9 N -0.531 5.531 10 Si 0.799 3.201 11 H -0.212 1.212 12 H -0.186 1.186 13 H -0.192 1.192 14 C 0.257 3.743 15 O -0.503 6.503 16 C -0.017 4.017 17 H 0.101 0.899 18 C -0.163 4.163 19 C -0.108 4.108 20 C -0.177 4.177 21 C -0.078 4.078 22 N -0.254 5.254 23 C -0.092 4.092 24 C -0.180 4.180 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.090 0.910 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.057 0.943 32 H 0.043 0.957 33 H 0.105 0.895 34 H 0.080 0.920 35 H 0.069 0.931 36 H 0.095 0.905 37 H 0.110 0.890 38 H 0.103 0.897 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.107 0.893 42 H 0.098 0.902 43 H 0.095 0.905 44 H 0.062 0.938 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.553 7.898 -2.573 9.991 hybrid contribution -0.147 0.146 1.319 1.335 sum -5.700 8.044 -1.254 9.938 Atomic orbital electron populations 1.21703 0.94071 1.02360 1.01744 1.21413 0.97170 0.95201 1.01636 1.21745 0.95459 0.97702 1.00164 1.21275 0.93056 0.84782 1.01067 1.43634 1.55653 1.12020 1.05378 1.19973 1.38795 0.97925 0.91638 0.87610 1.26211 0.93460 0.96432 1.03918 1.70059 1.31086 1.17168 1.34814 0.85254 0.78710 0.78507 0.77584 1.21156 1.18567 1.19207 1.20872 0.80591 0.89710 0.83116 1.90358 1.56506 1.71174 1.32255 1.21127 0.99441 0.91554 0.89561 0.89889 1.22132 0.98780 0.97024 0.98401 1.21257 0.97739 0.96168 0.95599 1.22201 0.96228 0.98199 1.01070 1.22332 0.97908 0.85989 1.01574 1.62142 1.26881 1.22582 1.13775 1.22520 0.87846 1.01741 0.97137 1.22199 0.98298 0.99398 0.98086 0.92566 0.93017 0.91044 0.92593 0.92049 0.92822 0.94348 0.95673 0.89496 0.92043 0.93149 0.90531 0.88963 0.89709 0.90762 0.90943 0.89320 0.90203 0.90546 0.93760 0.89792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.82 9.91 71.98 0.71 -3.11 16 2 C -0.12 -3.93 5.93 30.59 0.18 -3.75 16 3 C -0.11 -4.68 5.50 30.59 0.17 -4.52 16 4 C 0.12 6.07 4.88 86.38 0.42 6.49 16 5 N -0.45 -23.01 2.51 -635.54 -1.59 -24.60 16 6 C -0.36 -17.73 8.13 84.04 0.68 -17.05 16 7 H 0.11 4.92 4.95 -2.91 -0.01 4.90 16 8 C 0.00 0.14 4.94 84.93 0.42 0.56 16 9 N -0.89 -47.83 11.45 21.66 0.25 -47.58 16 10 Si 0.98 38.90 29.60 68.60 2.03 40.93 16 11 H -0.29 -11.43 7.11 99.48 0.71 -10.73 16 12 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 13 H -0.27 -10.34 7.11 99.48 0.71 -9.64 16 14 C 0.47 23.48 6.47 87.66 0.57 24.04 16 15 O -0.62 -33.55 13.23 -3.06 -0.04 -33.59 16 16 C 0.09 3.97 2.14 44.21 0.09 4.06 16 17 H 0.08 3.69 8.03 -2.39 -0.02 3.67 16 18 C -0.12 -4.38 3.58 30.77 0.11 -4.27 16 19 C -0.09 -2.47 3.44 -10.40 -0.04 -2.51 16 20 C -0.14 -3.24 5.75 30.77 0.18 -3.06 16 21 C 0.05 1.39 6.09 86.34 0.53 1.92 16 22 N -0.53 -19.93 4.86 -874.32 -4.25 -24.19 16 23 C 0.04 1.26 5.65 86.34 0.49 1.75 16 24 C -0.14 -4.17 5.75 30.77 0.18 -3.99 16 25 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 26 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 29 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.04 1.68 8.14 -2.39 -0.02 1.67 16 32 H 0.02 1.33 7.59 -2.39 -0.02 1.31 16 33 H 0.09 4.57 5.54 -2.39 -0.01 4.56 16 34 H 0.27 13.67 8.31 -92.71 -0.77 12.90 16 35 H 0.05 2.00 6.85 -2.39 -0.02 1.99 16 36 H 0.08 2.54 7.62 -2.39 -0.02 2.53 16 37 H 0.09 2.23 8.14 -2.38 -0.02 2.21 16 38 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 39 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 40 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 42 H 0.08 3.53 5.05 -2.38 -0.01 3.52 16 43 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 44 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 45 H 0.08 2.00 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -61.24 337.22 2.03 -59.21 By element: Atomic # 1 Polarization: 32.30 SS G_CDS: 0.95 Total: 33.25 kcal Atomic # 6 Polarization: -8.12 SS G_CDS: 4.69 Total: -3.43 kcal Atomic # 7 Polarization: -90.77 SS G_CDS: -5.60 Total: -96.37 kcal Atomic # 8 Polarization: -33.55 SS G_CDS: -0.04 Total: -33.59 kcal Atomic # 14 Polarization: 38.90 SS G_CDS: 2.03 Total: 40.93 kcal Total: -61.24 2.03 -59.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142628967.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.925 kcal (2) G-P(sol) polarization free energy of solvation -61.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds