Wall clock time and date at job start Tue Mar 31 2020 02:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.50701 * 119.99883 * 2 1 4 4 C 1.32988 * 120.00099 * 180.02562 * 2 1 3 5 5 C 1.47098 * 120.00203 * 173.87004 * 4 2 1 6 6 O 1.21617 * 120.00002 * 359.16079 * 5 4 2 7 7 N 1.34781 * 120.00543 * 179.16459 * 5 4 2 8 8 C 1.46930 * 120.62485 * 354.98632 * 7 5 4 9 9 C 1.52766 * 109.00668 * 233.58513 * 8 7 5 10 10 C 1.53043 * 109.38385 * 305.58919 * 9 8 7 11 11 C 1.53044 * 109.53600 * 61.23835 * 10 9 8 12 12 C 1.46920 * 120.63545 * 175.26926 * 7 5 4 13 13 H 1.09003 * 109.58547 * 246.29827 * 12 7 5 14 14 C 1.53002 * 109.58665 * 6.57651 * 12 7 5 15 15 N 1.46499 * 109.47168 * 179.90837 * 14 12 7 16 16 C 1.46501 * 120.00080 * 272.40719 * 15 14 12 17 17 C 1.36931 * 119.99971 * 92.40659 * 15 14 12 18 18 H 1.08004 * 120.00063 * 31.73751 * 17 15 14 19 19 C 1.38817 * 120.00072 * 211.73859 * 17 15 14 20 20 N 1.31620 * 119.99964 * 6.38750 * 19 17 15 21 21 Si 1.86802 * 119.99741 * 186.39027 * 19 17 15 22 22 H 1.48505 * 109.47096 * 94.99659 * 21 19 17 23 23 H 1.48506 * 109.47080 * 214.99489 * 21 19 17 24 24 H 1.48496 * 109.47421 * 334.99511 * 21 19 17 25 25 H 1.08998 * 109.46965 * 239.99890 * 1 2 3 26 26 H 1.08998 * 109.46543 * 359.97438 * 1 2 3 27 27 H 1.08996 * 109.47167 * 120.00209 * 1 2 3 28 28 H 1.09003 * 109.47297 * 263.63572 * 3 2 1 29 29 H 1.09001 * 109.47483 * 23.64034 * 3 2 1 30 30 H 1.09000 * 109.47056 * 143.64459 * 3 2 1 31 31 H 1.07998 * 120.00339 * 353.59096 * 4 2 1 32 32 H 1.09000 * 109.58893 * 353.41519 * 8 7 5 33 33 H 1.08998 * 109.58780 * 113.84351 * 8 7 5 34 34 H 1.08999 * 109.56468 * 185.55031 * 9 8 7 35 35 H 1.08996 * 109.38731 * 65.51626 * 9 8 7 36 36 H 1.08998 * 109.45511 * 301.21845 * 10 9 8 37 37 H 1.08997 * 109.45470 * 181.26066 * 10 9 8 38 38 H 1.08994 * 109.49210 * 178.68079 * 11 10 9 39 39 H 1.09005 * 109.51986 * 58.60800 * 11 10 9 40 40 H 1.08992 * 109.47136 * 299.91106 * 14 12 7 41 41 H 1.09000 * 109.47062 * 59.91409 * 14 12 7 42 42 H 1.09008 * 109.46863 * 95.22455 * 16 15 14 43 43 H 1.08998 * 109.47136 * 215.22097 * 16 15 14 44 44 H 1.08995 * 109.47200 * 335.22926 * 16 15 14 45 45 H 0.97003 * 119.99654 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1720 -1.1517 -0.0005 5 6 3.6366 -1.1553 -0.1365 6 8 4.2381 -0.1060 -0.2639 7 7 4.3122 -2.3215 -0.1202 8 6 3.6139 -3.5874 0.1421 9 6 4.3126 -4.3122 1.2911 10 6 5.7991 -4.4701 0.9630 11 6 6.4372 -3.0884 0.8020 12 6 5.7617 -2.3504 -0.3580 13 1 5.9682 -2.8696 -1.2939 14 6 6.2972 -0.9193 -0.4367 15 7 7.7429 -0.9510 -0.6717 16 6 8.6678 -1.0275 0.4619 17 6 8.2297 -0.9093 -1.9509 18 1 7.6928 -0.3676 -2.7156 19 6 9.4132 -1.5633 -2.2648 20 7 10.0015 -2.3261 -1.3680 21 14 10.1710 -1.3605 -3.9602 22 1 11.1914 -0.2823 -3.9205 23 1 10.8132 -2.6349 -4.3710 24 1 9.1109 -1.0031 -4.9367 25 1 -0.3633 -0.5138 0.8900 26 1 -0.3632 1.0277 0.0005 27 1 -0.3633 -0.5138 -0.8899 28 1 2.5408 1.5629 -1.0213 29 1 1.6269 2.0905 0.4121 30 1 3.1589 1.2060 0.6092 31 1 1.6371 -2.0842 0.1035 32 1 2.5788 -3.3838 0.4160 33 1 3.6418 -4.2118 -0.7509 34 1 3.8638 -5.2959 1.4286 35 1 4.2018 -3.7307 2.2063 36 1 5.9084 -5.0310 0.0348 37 1 6.2944 -5.0069 1.7720 38 1 7.5007 -3.2012 0.5915 39 1 6.3069 -2.5176 1.7215 40 1 5.8075 -0.3926 -1.2556 41 1 6.0929 -0.4028 0.5012 42 1 8.9400 -2.0680 0.6392 43 1 9.5650 -0.4503 0.2383 44 1 8.1866 -0.6212 1.3515 45 1 10.8283 -2.7834 -1.5875 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157487279.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:32:10 Heat of formation + Delta-G solvation = 15.536794 kcal Electronic energy + Delta-G solvation = -23509.326936 eV Core-core repulsion = 20335.478025 eV Total energy + Delta-G solvation = -3173.848911 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.16615 -37.42862 -35.48873 -35.07413 -32.53154 -31.86870 -30.01227 -28.12414 -27.63146 -26.32258 -25.55387 -24.17126 -22.42185 -21.15747 -20.29164 -19.25134 -17.76995 -16.91680 -16.23203 -15.42445 -14.95374 -14.59567 -14.38843 -14.16025 -13.93720 -13.81364 -13.64488 -13.08798 -13.00666 -12.72578 -12.54049 -12.46219 -12.22118 -12.07261 -11.63691 -11.54935 -11.35499 -10.90299 -10.87083 -10.79634 -10.54958 -10.48487 -10.23776 -10.11495 -9.95940 -9.81637 -9.63513 -8.98146 -8.59737 -8.30858 -7.93523 -6.47315 -5.60426 -3.14483 1.52657 3.41509 3.46659 3.50434 3.52885 3.63329 4.60566 4.70748 4.81150 4.92615 5.13210 5.20323 5.23137 5.36337 5.46610 5.52754 5.58283 5.66194 5.68692 5.71719 5.74903 5.88015 5.97870 6.05460 6.10272 6.15313 6.18380 6.33182 6.37096 6.54795 6.62952 6.70540 6.72225 6.83832 6.91782 7.09906 7.17605 7.45082 7.51353 7.86249 7.93236 7.97103 8.57415 8.73132 9.39190 10.02075 10.56281 11.41940 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.018147 B = 0.005387 C = 0.004607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.608043 B = 5196.026897 C = 6075.983705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.041 4.041 3 C -0.127 4.127 4 C -0.235 4.235 5 C 0.539 3.461 6 O -0.527 6.527 7 N -0.603 5.603 8 C 0.107 3.893 9 C -0.133 4.133 10 C -0.119 4.119 11 C -0.125 4.125 12 C 0.125 3.875 13 H 0.069 0.931 14 C 0.169 3.831 15 N -0.601 5.601 16 C 0.158 3.842 17 C -0.250 4.250 18 H 0.062 0.938 19 C 0.007 3.993 20 N -0.907 5.907 21 Si 0.899 3.101 22 H -0.289 1.289 23 H -0.292 1.292 24 H -0.279 1.279 25 H 0.071 0.929 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.048 0.952 30 H 0.098 0.902 31 H 0.122 0.878 32 H 0.079 0.921 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.057 0.943 38 H 0.097 0.903 39 H 0.051 0.949 40 H 0.068 0.932 41 H 0.045 0.955 42 H 0.036 0.964 43 H 0.031 0.969 44 H -0.004 1.004 45 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.776 -2.138 5.898 18.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.043 4.043 3 C -0.183 4.183 4 C -0.256 4.256 5 C 0.330 3.670 6 O -0.406 6.406 7 N -0.336 5.336 8 C -0.017 4.017 9 C -0.171 4.171 10 C -0.157 4.157 11 C -0.163 4.163 12 C 0.020 3.980 13 H 0.087 0.913 14 C 0.042 3.958 15 N -0.324 5.324 16 C 0.013 3.987 17 C -0.380 4.380 18 H 0.080 0.920 19 C -0.192 4.192 20 N -0.552 5.552 21 Si 0.730 3.270 22 H -0.216 1.216 23 H -0.218 1.218 24 H -0.205 1.205 25 H 0.090 0.910 26 H 0.086 0.914 27 H 0.092 0.908 28 H 0.095 0.905 29 H 0.067 0.933 30 H 0.116 0.884 31 H 0.140 0.860 32 H 0.097 0.903 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.115 0.885 39 H 0.069 0.931 40 H 0.086 0.914 41 H 0.063 0.937 42 H 0.054 0.946 43 H 0.050 0.950 44 H 0.014 0.986 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -17.269 -1.670 5.819 18.299 hybrid contribution 0.445 -0.472 -0.905 1.113 sum -16.824 -2.142 4.914 17.657 Atomic orbital electron populations 1.20985 0.91657 1.03037 1.02490 1.22526 0.95493 0.95703 0.90599 1.21249 1.00620 0.92555 1.03860 1.22556 0.94179 0.98495 1.10360 1.18480 0.87492 0.83632 0.77391 1.90816 1.69030 1.31058 1.49706 1.48333 1.09498 1.05789 1.69976 1.21636 0.96061 0.85849 0.98134 1.21835 0.96985 0.99873 0.98388 1.21533 0.94443 0.98429 1.01286 1.22007 1.02162 0.94169 0.97971 1.22490 0.75769 1.02471 0.97252 0.91308 1.21515 0.83517 0.90381 1.00396 1.44182 0.99849 1.85363 1.03009 1.20878 0.91987 0.99348 0.86486 1.19195 1.06403 1.25381 0.87027 0.91992 1.25221 0.99760 0.96953 0.97221 1.69994 1.19303 1.32565 1.33315 0.86312 0.79188 0.76904 0.84616 1.21611 1.21807 1.20465 0.91007 0.91405 0.90841 0.90467 0.93265 0.88383 0.86021 0.90256 0.91891 0.91492 0.91917 0.92120 0.92395 0.88473 0.93055 0.91416 0.93670 0.94637 0.95011 0.98572 0.93946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.00 10.06 36.01 0.36 -0.64 16 2 C -0.04 -0.48 6.11 -101.17 -0.62 -1.10 16 3 C -0.13 -1.63 8.49 36.01 0.31 -1.33 16 4 C -0.24 -3.02 8.94 -37.81 -0.34 -3.36 16 5 C 0.54 9.11 7.48 -12.66 -0.09 9.01 16 6 O -0.53 -10.45 8.53 5.26 0.04 -10.40 16 7 N -0.60 -10.03 2.98 -166.86 -0.50 -10.53 16 8 C 0.11 1.34 6.29 -3.93 -0.02 1.32 16 9 C -0.13 -1.61 6.06 -26.83 -0.16 -1.77 16 10 C -0.12 -1.79 5.89 -26.69 -0.16 -1.94 16 11 C -0.13 -2.36 4.55 -26.61 -0.12 -2.48 16 12 C 0.12 2.52 3.20 -67.60 -0.22 2.31 16 13 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 14 C 0.17 3.94 3.65 -4.04 -0.01 3.93 16 15 N -0.60 -15.94 2.70 -181.12 -0.49 -16.43 16 16 C 0.16 4.04 7.81 59.85 0.47 4.51 16 17 C -0.25 -7.17 9.57 -15.06 -0.14 -7.31 16 18 H 0.06 1.80 7.84 -52.48 -0.41 1.38 16 19 C 0.01 0.19 5.24 -17.43 -0.09 0.10 16 20 N -0.91 -26.61 10.92 55.49 0.61 -26.00 16 21 Si 0.90 22.44 29.56 -169.99 -5.02 17.41 16 22 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 23 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 24 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 25 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.07 0.48 7.86 -51.93 -0.41 0.07 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.08 1.07 8.09 -51.93 -0.42 0.65 16 29 H 0.05 0.51 7.93 -51.93 -0.41 0.10 16 30 H 0.10 1.53 5.95 -51.93 -0.31 1.22 16 31 H 0.12 1.25 5.97 -52.49 -0.31 0.93 16 32 H 0.08 0.80 5.39 -51.93 -0.28 0.52 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.10 2.18 5.74 -51.93 -0.30 1.88 16 39 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.07 1.70 6.31 -51.93 -0.33 1.38 16 41 H 0.05 1.07 6.80 -51.93 -0.35 0.72 16 42 H 0.04 0.95 5.58 -51.92 -0.29 0.66 16 43 H 0.03 0.86 7.75 -51.93 -0.40 0.46 16 44 H 0.00 -0.10 7.86 -51.93 -0.41 -0.51 16 45 H 0.25 7.14 8.31 -40.82 -0.34 6.81 16 LS Contribution 339.99 15.07 5.12 5.12 Total: -1.00 -31.13 339.99 -8.66 -39.78 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -7.57 Total: -0.20 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: -0.85 Total: 1.24 kcal Atomic # 7 Polarization: -52.58 SS G_CDS: -0.38 Total: -52.96 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.04 Total: -10.40 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.13 -8.66 -39.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157487279.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.319 kcal (2) G-P(sol) polarization free energy of solvation -31.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds