Wall clock time and date at job start Tue Mar 31 2020 02:32:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.50701 * 119.99883 * 2 1 4 4 C 1.32988 * 120.00099 * 180.02562 * 2 1 3 5 5 C 1.47098 * 120.00203 * 173.87004 * 4 2 1 6 6 O 1.21617 * 120.00002 * 359.16079 * 5 4 2 7 7 N 1.34781 * 120.00543 * 179.16459 * 5 4 2 8 8 C 1.46930 * 120.62485 * 354.98632 * 7 5 4 9 9 C 1.52766 * 109.00668 * 233.58513 * 8 7 5 10 10 C 1.53043 * 109.38385 * 305.58919 * 9 8 7 11 11 C 1.53044 * 109.53600 * 61.23835 * 10 9 8 12 12 C 1.46920 * 120.63545 * 175.26926 * 7 5 4 13 13 H 1.09003 * 109.58547 * 246.29827 * 12 7 5 14 14 C 1.53002 * 109.58665 * 6.57651 * 12 7 5 15 15 N 1.46499 * 109.47168 * 179.90837 * 14 12 7 16 16 C 1.46501 * 120.00080 * 272.40719 * 15 14 12 17 17 C 1.36931 * 119.99971 * 92.40659 * 15 14 12 18 18 H 1.08004 * 120.00063 * 31.73751 * 17 15 14 19 19 C 1.38817 * 120.00072 * 211.73859 * 17 15 14 20 20 N 1.31620 * 119.99964 * 6.38750 * 19 17 15 21 21 Si 1.86802 * 119.99741 * 186.39027 * 19 17 15 22 22 H 1.48505 * 109.47096 * 94.99659 * 21 19 17 23 23 H 1.48506 * 109.47080 * 214.99489 * 21 19 17 24 24 H 1.48496 * 109.47421 * 334.99511 * 21 19 17 25 25 H 1.08998 * 109.46965 * 239.99890 * 1 2 3 26 26 H 1.08998 * 109.46543 * 359.97438 * 1 2 3 27 27 H 1.08996 * 109.47167 * 120.00209 * 1 2 3 28 28 H 1.09003 * 109.47297 * 263.63572 * 3 2 1 29 29 H 1.09001 * 109.47483 * 23.64034 * 3 2 1 30 30 H 1.09000 * 109.47056 * 143.64459 * 3 2 1 31 31 H 1.07998 * 120.00339 * 353.59096 * 4 2 1 32 32 H 1.09000 * 109.58893 * 353.41519 * 8 7 5 33 33 H 1.08998 * 109.58780 * 113.84351 * 8 7 5 34 34 H 1.08999 * 109.56468 * 185.55031 * 9 8 7 35 35 H 1.08996 * 109.38731 * 65.51626 * 9 8 7 36 36 H 1.08998 * 109.45511 * 301.21845 * 10 9 8 37 37 H 1.08997 * 109.45470 * 181.26066 * 10 9 8 38 38 H 1.08994 * 109.49210 * 178.68079 * 11 10 9 39 39 H 1.09005 * 109.51986 * 58.60800 * 11 10 9 40 40 H 1.08992 * 109.47136 * 299.91106 * 14 12 7 41 41 H 1.09000 * 109.47062 * 59.91409 * 14 12 7 42 42 H 1.09008 * 109.46863 * 95.22455 * 16 15 14 43 43 H 1.08998 * 109.47136 * 215.22097 * 16 15 14 44 44 H 1.08995 * 109.47200 * 335.22926 * 16 15 14 45 45 H 0.97003 * 119.99654 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1720 -1.1517 -0.0005 5 6 3.6366 -1.1553 -0.1365 6 8 4.2381 -0.1060 -0.2639 7 7 4.3122 -2.3215 -0.1202 8 6 3.6139 -3.5874 0.1421 9 6 4.3126 -4.3122 1.2911 10 6 5.7991 -4.4701 0.9630 11 6 6.4372 -3.0884 0.8020 12 6 5.7617 -2.3504 -0.3580 13 1 5.9682 -2.8696 -1.2939 14 6 6.2972 -0.9193 -0.4367 15 7 7.7429 -0.9510 -0.6717 16 6 8.6678 -1.0275 0.4619 17 6 8.2297 -0.9093 -1.9509 18 1 7.6928 -0.3676 -2.7156 19 6 9.4132 -1.5633 -2.2648 20 7 10.0015 -2.3261 -1.3680 21 14 10.1710 -1.3605 -3.9602 22 1 11.1914 -0.2823 -3.9205 23 1 10.8132 -2.6349 -4.3710 24 1 9.1109 -1.0031 -4.9367 25 1 -0.3633 -0.5138 0.8900 26 1 -0.3632 1.0277 0.0005 27 1 -0.3633 -0.5138 -0.8899 28 1 2.5408 1.5629 -1.0213 29 1 1.6269 2.0905 0.4121 30 1 3.1589 1.2060 0.6092 31 1 1.6371 -2.0842 0.1035 32 1 2.5788 -3.3838 0.4160 33 1 3.6418 -4.2118 -0.7509 34 1 3.8638 -5.2959 1.4286 35 1 4.2018 -3.7307 2.2063 36 1 5.9084 -5.0310 0.0348 37 1 6.2944 -5.0069 1.7720 38 1 7.5007 -3.2012 0.5915 39 1 6.3069 -2.5176 1.7215 40 1 5.8075 -0.3926 -1.2556 41 1 6.0929 -0.4028 0.5012 42 1 8.9400 -2.0680 0.6392 43 1 9.5650 -0.4503 0.2383 44 1 8.1866 -0.6212 1.3515 45 1 10.8283 -2.7834 -1.5875 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157487279.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:32:09 Heat of formation + Delta-G solvation = -2.360259 kcal Electronic energy + Delta-G solvation = -23510.103010 eV Core-core repulsion = 20335.478025 eV Total energy + Delta-G solvation = -3174.624985 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.51826 -38.75895 -37.26867 -36.24939 -33.92238 -33.67199 -31.78785 -29.17003 -28.55549 -28.13626 -27.48499 -25.56150 -23.98405 -22.66172 -21.88714 -20.54233 -18.88972 -18.79826 -17.83028 -16.88593 -16.57826 -16.27703 -15.57803 -15.39580 -15.34829 -15.25834 -14.80560 -14.65622 -14.41680 -14.23997 -14.00910 -13.73603 -13.29519 -13.24243 -13.14355 -12.83294 -12.73304 -12.60909 -12.47924 -12.45794 -12.18702 -12.11186 -11.96922 -11.78676 -11.70862 -11.45981 -11.30977 -10.66366 -10.03369 -9.86375 -9.31846 -8.63498 -7.80899 -5.39719 0.50496 1.43229 1.43984 1.54054 2.15410 2.41358 2.50791 3.29587 3.69563 3.83439 3.89536 3.97017 4.01810 4.09567 4.18773 4.27285 4.42897 4.57540 4.63422 4.66645 4.70248 4.75547 4.80961 4.83167 4.91086 4.96062 5.03390 5.03738 5.13772 5.14773 5.22554 5.24364 5.27201 5.30591 5.37640 5.48816 5.60004 5.62881 5.71054 5.75270 5.86001 6.38117 6.69477 7.17337 7.39682 7.88554 8.37418 9.19150 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.018147 B = 0.005387 C = 0.004607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.608043 B = 5196.026897 C = 6075.983705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.028 4.028 3 C -0.129 4.129 4 C -0.246 4.246 5 C 0.525 3.475 6 O -0.569 6.569 7 N -0.606 5.606 8 C 0.101 3.899 9 C -0.124 4.124 10 C -0.116 4.116 11 C -0.115 4.115 12 C 0.138 3.862 13 H 0.038 0.962 14 C 0.183 3.817 15 N -0.616 5.616 16 C 0.176 3.824 17 C -0.270 4.270 18 H 0.051 0.949 19 C -0.037 4.037 20 N -0.928 5.928 21 Si 0.965 3.035 22 H -0.285 1.285 23 H -0.287 1.287 24 H -0.273 1.273 25 H 0.093 0.907 26 H 0.078 0.922 27 H 0.088 0.912 28 H 0.060 0.940 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.157 0.843 32 H 0.116 0.884 33 H 0.070 0.930 34 H 0.105 0.895 35 H 0.064 0.936 36 H 0.054 0.946 37 H 0.071 0.929 38 H 0.056 0.944 39 H 0.048 0.952 40 H 0.043 0.957 41 H 0.037 0.963 42 H 0.023 0.977 43 H 0.006 0.994 44 H 0.015 0.985 45 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.878 -3.405 6.279 22.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.030 4.030 3 C -0.185 4.185 4 C -0.267 4.267 5 C 0.318 3.682 6 O -0.452 6.452 7 N -0.339 5.339 8 C -0.021 4.021 9 C -0.162 4.162 10 C -0.153 4.153 11 C -0.153 4.153 12 C 0.032 3.968 13 H 0.056 0.944 14 C 0.058 3.942 15 N -0.341 5.341 16 C 0.031 3.969 17 C -0.400 4.400 18 H 0.069 0.931 19 C -0.234 4.234 20 N -0.573 5.573 21 Si 0.793 3.207 22 H -0.212 1.212 23 H -0.213 1.213 24 H -0.198 1.198 25 H 0.111 0.889 26 H 0.097 0.903 27 H 0.106 0.894 28 H 0.078 0.922 29 H 0.094 0.906 30 H 0.085 0.915 31 H 0.175 0.825 32 H 0.134 0.866 33 H 0.088 0.912 34 H 0.123 0.877 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.089 0.911 38 H 0.074 0.926 39 H 0.066 0.934 40 H 0.062 0.938 41 H 0.056 0.944 42 H 0.042 0.958 43 H 0.025 0.975 44 H 0.034 0.966 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -20.421 -2.958 6.214 21.549 hybrid contribution 1.359 0.029 -0.999 1.687 sum -19.062 -2.929 5.214 19.978 Atomic orbital electron populations 1.21050 0.88134 1.04396 1.04084 1.22876 0.97727 0.94350 0.88090 1.21180 1.00212 0.94716 1.02362 1.22529 0.91212 1.00527 1.12387 1.19324 0.89454 0.82912 0.76469 1.90804 1.70293 1.32497 1.51583 1.48341 1.07799 1.07761 1.69966 1.21989 0.97480 0.83844 0.98796 1.21813 0.94449 1.01909 0.98002 1.21507 0.96788 0.95431 1.01621 1.21804 0.99914 0.96755 0.96834 1.21827 0.78858 0.99502 0.96569 0.94424 1.21291 0.81821 0.92298 0.98838 1.44362 1.01202 1.85873 1.02639 1.20630 0.91092 0.98205 0.86966 1.19339 1.07076 1.25851 0.87761 0.93093 1.25909 0.99974 0.96649 1.00836 1.70144 1.19369 1.32971 1.34865 0.85296 0.78231 0.76860 0.80306 1.21221 1.21285 1.19839 0.88882 0.90348 0.89385 0.92156 0.90635 0.91533 0.82526 0.86610 0.91215 0.87670 0.91755 0.92703 0.91058 0.92582 0.93361 0.93836 0.94425 0.95844 0.97530 0.96614 0.94090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.40 10.06 71.24 0.72 -0.69 16 2 C -0.03 -0.59 6.11 -17.62 -0.11 -0.70 16 3 C -0.13 -3.27 8.49 71.24 0.60 -2.67 16 4 C -0.25 -5.71 8.94 23.43 0.21 -5.50 16 5 C 0.52 17.72 7.48 86.57 0.65 18.37 16 6 O -0.57 -23.72 8.53 -4.08 -0.03 -23.76 16 7 N -0.61 -19.95 2.98 -800.08 -2.38 -22.33 16 8 C 0.10 2.23 6.29 86.22 0.54 2.77 16 9 C -0.12 -2.59 6.06 30.53 0.19 -2.40 16 10 C -0.12 -3.33 5.89 30.62 0.18 -3.15 16 11 C -0.11 -4.45 4.55 30.67 0.14 -4.31 16 12 C 0.14 5.83 3.20 44.97 0.14 5.97 16 13 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 14 C 0.18 9.08 3.65 86.38 0.32 9.39 16 15 N -0.62 -34.50 2.70 -726.94 -1.96 -36.46 16 16 C 0.18 9.47 7.81 127.77 1.00 10.47 16 17 C -0.27 -16.19 9.57 84.04 0.80 -15.38 16 18 H 0.05 3.11 7.84 -2.91 -0.02 3.08 16 19 C -0.04 -2.20 5.24 84.86 0.44 -1.75 16 20 N -0.93 -56.12 10.92 21.65 0.24 -55.88 16 21 Si 0.97 47.11 29.56 68.60 2.03 49.14 16 22 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 23 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 24 H -0.27 -12.97 7.11 99.48 0.71 -12.27 16 25 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.08 0.78 7.86 -2.39 -0.02 0.76 16 27 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.06 1.73 8.09 -2.39 -0.02 1.71 16 29 H 0.07 1.47 7.93 -2.39 -0.02 1.45 16 30 H 0.07 2.15 5.95 -2.39 -0.01 2.14 16 31 H 0.16 2.45 5.97 -2.91 -0.02 2.44 16 32 H 0.12 1.75 5.39 -2.39 -0.01 1.74 16 33 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.06 2.64 5.74 -2.39 -0.01 2.63 16 39 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 40 H 0.04 2.35 6.31 -2.39 -0.02 2.34 16 41 H 0.04 1.89 6.80 -2.39 -0.02 1.88 16 42 H 0.02 1.32 5.58 -2.38 -0.01 1.31 16 43 H 0.01 0.34 7.75 -2.39 -0.02 0.33 16 44 H 0.02 0.75 7.86 -2.39 -0.02 0.73 16 45 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 Total: -1.00 -72.53 339.99 4.66 -67.87 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: 0.96 Total: 11.02 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: 5.82 Total: 10.41 kcal Atomic # 7 Polarization: -110.57 SS G_CDS: -4.11 Total: -114.68 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: -0.03 Total: -23.76 kcal Atomic # 14 Polarization: 47.11 SS G_CDS: 2.03 Total: 49.14 kcal Total: -72.53 4.66 -67.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157487279.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.509 kcal (2) G-P(sol) polarization free energy of solvation -72.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds