Wall clock time and date at job start Tue Mar 31 2020 01:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 109.47181 * 2 1 4 4 C 1.53007 * 109.47234 * 240.00373 * 2 1 3 5 5 H 1.08995 * 109.87057 * 298.07994 * 4 2 1 6 6 C 1.54329 * 109.88016 * 59.09150 * 4 2 1 7 7 C 1.55156 * 102.93813 * 141.61236 * 6 4 2 8 8 H 1.08998 * 111.00121 * 82.57498 * 7 6 4 9 9 N 1.46903 * 110.99880 * 206.42261 * 7 6 4 10 10 C 1.48532 * 110.99654 * 173.90473 * 9 7 6 11 11 C 1.54937 * 103.22999 * 159.72148 * 10 9 7 12 12 C 1.54599 * 102.91873 * 322.58331 * 11 10 9 13 13 C 1.47903 * 111.00050 * 291.29795 * 9 7 6 14 14 C 1.54900 * 101.58493 * 324.49652 * 7 6 4 15 15 N 1.47023 * 109.88209 * 176.89832 * 4 2 1 16 16 C 1.34779 * 125.64427 * 61.62606 * 15 4 2 17 17 O 1.21681 * 120.00373 * 4.79268 * 16 15 4 18 18 C 1.46375 * 119.99254 * 184.79390 * 16 15 4 19 19 H 1.08001 * 120.00592 * 359.97438 * 18 16 15 20 20 C 1.40058 * 119.99769 * 180.02562 * 18 16 15 21 21 N 1.30669 * 119.99564 * 359.97438 * 20 18 16 22 22 Si 1.86791 * 119.99961 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47430 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47204 * 119.99925 * 22 20 18 25 25 H 1.48503 * 109.46932 * 239.99718 * 22 20 18 26 26 H 1.09002 * 109.47101 * 174.93229 * 1 2 3 27 27 H 1.09009 * 109.47014 * 294.92835 * 1 2 3 28 28 H 1.08996 * 109.47543 * 54.92954 * 1 2 3 29 29 H 1.09003 * 109.47727 * 120.00134 * 2 1 3 30 30 H 1.09008 * 109.46952 * 65.97226 * 3 2 1 31 31 H 1.09003 * 109.47507 * 185.96639 * 3 2 1 32 32 H 1.08995 * 109.47697 * 305.97179 * 3 2 1 33 33 H 1.08999 * 110.71885 * 259.97432 * 6 4 2 34 34 H 1.09001 * 110.71780 * 23.24805 * 6 4 2 35 35 H 1.09003 * 110.66925 * 278.15421 * 10 9 7 36 36 H 1.08997 * 110.66989 * 41.28456 * 10 9 7 37 37 H 1.09004 * 110.72961 * 204.22887 * 11 10 9 38 38 H 1.09006 * 110.87676 * 81.00869 * 11 10 9 39 39 H 1.08995 * 110.31119 * 263.04263 * 12 11 10 40 40 H 1.09002 * 110.39021 * 140.91323 * 12 11 10 41 41 H 1.08995 * 109.91787 * 333.50991 * 13 9 7 42 42 H 1.08997 * 109.92081 * 94.60902 * 13 9 7 43 43 H 1.08995 * 110.37157 * 155.84984 * 14 7 6 44 44 H 1.09004 * 110.36985 * 278.06511 * 14 7 6 45 45 H 0.96997 * 119.99777 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 1 1.7086 -1.7595 -1.2390 6 6 1.5121 -0.0144 -2.5156 7 6 2.7196 -0.0936 -3.4867 8 1 2.7531 -1.0597 -3.9903 9 7 2.6843 1.0050 -4.4613 10 6 3.9129 1.0155 -5.2960 11 6 3.4881 1.8327 -6.5419 12 6 2.0259 1.3841 -6.7673 13 6 1.5573 0.8406 -5.4048 14 6 3.9132 0.0664 -2.5125 15 7 3.5083 -0.6620 -1.2964 16 6 4.3453 -1.1866 -0.3795 17 8 3.9020 -1.8443 0.5432 18 6 5.7876 -0.9650 -0.4939 19 1 6.1812 -0.3816 -1.3131 20 6 6.6576 -1.5106 0.4586 21 7 6.1815 -2.2169 1.4495 22 14 8.4983 -1.2285 0.3123 23 1 8.7785 -0.4025 -0.8895 24 1 8.9888 -0.5233 1.5236 25 1 9.1909 -2.5360 0.1862 26 1 -0.3633 -1.0237 -0.0908 27 1 -0.3633 0.4332 0.9320 28 1 -0.3634 0.5904 -0.8410 29 1 1.8934 -0.5138 0.8900 30 1 1.7665 1.9245 0.9387 31 1 3.1247 1.4444 -0.1068 32 1 1.5920 1.9863 -0.8316 33 1 0.6529 -0.5463 -2.9243 34 1 1.2578 1.0234 -2.3003 35 1 4.7301 1.5107 -4.7715 36 1 4.1946 0.0013 -5.5788 37 1 4.1072 1.5756 -7.4014 38 1 3.5364 2.9027 -6.3397 39 1 1.9830 0.5994 -7.5226 40 1 1.4106 2.2320 -7.0682 41 1 1.2992 -0.2146 -5.4948 42 1 0.6936 1.4052 -5.0536 43 1 4.8129 -0.3774 -2.9386 44 1 4.0807 1.1198 -2.2875 45 1 6.7839 -2.5945 2.1093 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001159151056.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:44 Heat of formation + Delta-G solvation = -38.419197 kcal Electronic energy + Delta-G solvation = -23524.929094 eV Core-core repulsion = 20348.740476 eV Total energy + Delta-G solvation = -3176.188618 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 3.31 seconds Orbital eigenvalues (eV) -39.69427 -38.07617 -35.77509 -33.90996 -32.48584 -31.57511 -29.27197 -28.63226 -26.84407 -26.62344 -25.99417 -22.91831 -22.04759 -20.74517 -20.17833 -19.82313 -17.93912 -16.59135 -16.22419 -15.93741 -15.54339 -14.76200 -14.56444 -14.03075 -13.88390 -13.66580 -13.26357 -12.81487 -12.65609 -12.50361 -12.41147 -12.13173 -11.88637 -11.57517 -11.48689 -11.39817 -11.21017 -11.11514 -11.07465 -10.96511 -10.76828 -10.64209 -10.48985 -10.36125 -10.19992 -10.06373 -10.03341 -9.68908 -8.84055 -8.33723 -7.56697 -7.11602 -6.17807 -4.61884 3.13064 3.21457 3.25645 3.94144 4.12121 4.56207 4.60708 4.61562 4.71828 4.91487 5.06108 5.23893 5.27883 5.37760 5.48483 5.51608 5.66100 5.67167 5.70649 5.73659 5.77756 5.83654 5.91298 5.92413 5.99318 6.07532 6.08446 6.11277 6.16313 6.26387 6.35004 6.42855 6.49999 6.53943 6.69051 6.81268 6.96112 6.99635 7.06910 7.23661 7.45394 7.50433 8.15136 8.46458 9.04242 9.54891 10.60453 10.80152 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.014891 B = 0.006065 C = 0.004585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.831777 B = 4615.253177 C = 6105.815208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.106 4.106 3 C -0.136 4.136 4 C 0.153 3.847 5 H 0.054 0.946 6 C -0.117 4.117 7 C 0.056 3.944 8 H 0.051 0.949 9 N -0.505 5.505 10 C 0.033 3.967 11 C -0.123 4.123 12 C -0.131 4.131 13 C 0.037 3.963 14 C 0.134 3.866 15 N -0.637 5.637 16 C 0.575 3.425 17 O -0.573 6.573 18 C -0.539 4.539 19 H 0.068 0.932 20 C 0.088 3.912 21 N -0.768 5.768 22 Si 0.905 3.095 23 H -0.264 1.264 24 H -0.276 1.276 25 H -0.277 1.277 26 H 0.049 0.951 27 H 0.048 0.952 28 H 0.049 0.951 29 H 0.084 0.916 30 H 0.040 0.960 31 H 0.063 0.937 32 H 0.047 0.953 33 H 0.062 0.938 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.045 0.955 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.063 0.937 40 H 0.069 0.931 41 H 0.042 0.958 42 H 0.076 0.924 43 H 0.063 0.937 44 H 0.056 0.944 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.498 7.435 -13.409 17.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.125 4.125 3 C -0.193 4.193 4 C 0.048 3.952 5 H 0.072 0.928 6 C -0.155 4.155 7 C -0.053 4.053 8 H 0.069 0.931 9 N -0.230 5.230 10 C -0.095 4.095 11 C -0.161 4.161 12 C -0.169 4.169 13 C -0.091 4.091 14 C 0.009 3.991 15 N -0.376 5.376 16 C 0.381 3.619 17 O -0.455 6.455 18 C -0.576 4.576 19 H 0.086 0.914 20 C -0.132 4.132 21 N -0.397 5.397 22 Si 0.729 3.271 23 H -0.188 1.188 24 H -0.201 1.201 25 H -0.202 1.202 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.102 0.898 30 H 0.059 0.941 31 H 0.082 0.918 32 H 0.066 0.934 33 H 0.081 0.919 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.063 0.937 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.060 0.940 42 H 0.095 0.905 43 H 0.081 0.919 44 H 0.075 0.925 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.688 7.376 -12.337 16.301 hybrid contribution 0.977 -0.689 -0.581 1.330 sum -6.711 6.687 -12.918 16.020 Atomic orbital electron populations 1.21803 0.96154 1.01011 1.00852 1.21403 0.94143 0.96806 1.00163 1.21747 1.02286 0.95534 0.99780 1.21155 0.83647 0.97439 0.92945 0.92808 1.22760 0.96221 1.01956 0.94527 1.23092 0.97693 0.91640 0.92890 0.93097 1.64770 1.02219 1.42609 1.13353 1.23239 0.93872 0.99011 0.93351 1.22472 0.95606 1.00636 0.97392 1.22395 0.96891 1.00745 0.96868 1.22815 0.95249 0.99496 0.91525 1.21760 0.94977 0.96842 0.85555 1.48682 1.03696 1.60638 1.24626 1.17957 0.86061 0.78211 0.79625 1.90599 1.77817 1.42977 1.34064 1.20941 0.89615 1.35160 1.11849 0.91382 1.25706 1.00121 0.93191 0.94142 1.70028 1.35568 1.24616 1.09459 0.86359 0.83126 0.78626 0.78940 1.18772 1.20138 1.20207 0.93195 0.93306 0.93168 0.89752 0.94072 0.91802 0.93407 0.91941 0.89567 0.89626 0.93691 0.91347 0.90809 0.91831 0.91250 0.93990 0.90525 0.91872 0.92543 0.92208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 8.84 37.15 0.33 -1.76 16 2 C -0.11 -1.99 2.64 -90.62 -0.24 -2.23 16 3 C -0.14 -2.44 8.75 37.16 0.33 -2.11 16 4 C 0.15 3.00 2.67 -66.95 -0.18 2.82 16 5 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 6 C -0.12 -1.79 4.44 -24.89 -0.11 -1.90 16 7 C 0.06 0.87 2.39 -65.57 -0.16 0.71 16 8 H 0.05 0.82 8.01 -51.93 -0.42 0.40 16 9 N -0.50 -6.69 5.15 -219.95 -1.13 -7.83 16 10 C 0.03 0.40 5.89 -1.90 -0.01 0.38 16 11 C -0.12 -1.17 7.06 -24.87 -0.18 -1.35 16 12 C -0.13 -1.19 6.93 -25.37 -0.18 -1.37 16 13 C 0.04 0.41 6.23 -2.75 -0.02 0.39 16 14 C 0.13 2.54 5.25 -2.53 -0.01 2.52 16 15 N -0.64 -14.54 2.09 -164.66 -0.34 -14.89 16 16 C 0.57 16.36 7.53 -12.99 -0.10 16.27 16 17 O -0.57 -18.43 14.26 5.21 0.07 -18.36 16 18 C -0.54 -15.22 8.97 -35.63 -0.32 -15.54 16 19 H 0.07 1.79 6.77 -52.49 -0.36 1.43 16 20 C 0.09 2.45 5.50 -17.36 -0.10 2.36 16 21 N -0.77 -23.03 11.83 55.55 0.66 -22.37 16 22 Si 0.90 20.24 29.56 -169.99 -5.02 15.21 16 23 H -0.26 -5.69 7.11 56.52 0.40 -5.29 16 24 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 25 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.05 0.68 8.14 -51.92 -0.42 0.26 16 28 H 0.05 0.66 7.17 -51.93 -0.37 0.29 16 29 H 0.08 1.96 7.09 -51.93 -0.37 1.59 16 30 H 0.04 0.68 8.14 -51.92 -0.42 0.26 16 31 H 0.06 1.33 7.31 -51.93 -0.38 0.95 16 32 H 0.05 0.75 6.35 -51.93 -0.33 0.42 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.09 1.30 5.55 -51.93 -0.29 1.01 16 35 H 0.09 1.06 8.07 -51.93 -0.42 0.64 16 36 H 0.04 0.55 8.02 -51.93 -0.42 0.13 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.04 0.47 7.69 -51.93 -0.40 0.07 16 42 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.06 1.24 7.35 -51.93 -0.38 0.86 16 44 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.27 7.27 8.29 -40.82 -0.34 6.93 16 LS Contribution 344.54 15.07 5.19 5.19 Total: -1.00 -32.65 344.54 -9.43 -42.08 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -7.91 Total: 1.78 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: -0.94 Total: -0.81 kcal Atomic # 7 Polarization: -44.27 SS G_CDS: -0.82 Total: -45.09 kcal Atomic # 8 Polarization: -18.43 SS G_CDS: 0.07 Total: -18.36 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.65 -9.43 -42.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159151056.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.656 kcal (2) G-P(sol) polarization free energy of solvation -32.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.31 seconds