Wall clock time and date at job start Tue Mar 31 2020 01:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 109.47181 * 2 1 4 4 C 1.53007 * 109.47234 * 240.00373 * 2 1 3 5 5 H 1.08995 * 109.87057 * 298.07994 * 4 2 1 6 6 C 1.54329 * 109.88016 * 59.09150 * 4 2 1 7 7 C 1.55156 * 102.93813 * 141.61236 * 6 4 2 8 8 H 1.08998 * 111.00121 * 82.57498 * 7 6 4 9 9 N 1.46903 * 110.99880 * 206.42261 * 7 6 4 10 10 C 1.48532 * 110.99654 * 173.90473 * 9 7 6 11 11 C 1.54937 * 103.22999 * 159.72148 * 10 9 7 12 12 C 1.54599 * 102.91873 * 322.58331 * 11 10 9 13 13 C 1.47903 * 111.00050 * 291.29795 * 9 7 6 14 14 C 1.54900 * 101.58493 * 324.49652 * 7 6 4 15 15 N 1.47023 * 109.88209 * 176.89832 * 4 2 1 16 16 C 1.34779 * 125.64427 * 61.62606 * 15 4 2 17 17 O 1.21681 * 120.00373 * 4.79268 * 16 15 4 18 18 C 1.46375 * 119.99254 * 184.79390 * 16 15 4 19 19 H 1.08001 * 120.00592 * 359.97438 * 18 16 15 20 20 C 1.40058 * 119.99769 * 180.02562 * 18 16 15 21 21 N 1.30669 * 119.99564 * 359.97438 * 20 18 16 22 22 Si 1.86791 * 119.99961 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47430 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47204 * 119.99925 * 22 20 18 25 25 H 1.48503 * 109.46932 * 239.99718 * 22 20 18 26 26 H 1.09002 * 109.47101 * 174.93229 * 1 2 3 27 27 H 1.09009 * 109.47014 * 294.92835 * 1 2 3 28 28 H 1.08996 * 109.47543 * 54.92954 * 1 2 3 29 29 H 1.09003 * 109.47727 * 120.00134 * 2 1 3 30 30 H 1.09008 * 109.46952 * 65.97226 * 3 2 1 31 31 H 1.09003 * 109.47507 * 185.96639 * 3 2 1 32 32 H 1.08995 * 109.47697 * 305.97179 * 3 2 1 33 33 H 1.08999 * 110.71885 * 259.97432 * 6 4 2 34 34 H 1.09001 * 110.71780 * 23.24805 * 6 4 2 35 35 H 1.09003 * 110.66925 * 278.15421 * 10 9 7 36 36 H 1.08997 * 110.66989 * 41.28456 * 10 9 7 37 37 H 1.09004 * 110.72961 * 204.22887 * 11 10 9 38 38 H 1.09006 * 110.87676 * 81.00869 * 11 10 9 39 39 H 1.08995 * 110.31119 * 263.04263 * 12 11 10 40 40 H 1.09002 * 110.39021 * 140.91323 * 12 11 10 41 41 H 1.08995 * 109.91787 * 333.50991 * 13 9 7 42 42 H 1.08997 * 109.92081 * 94.60902 * 13 9 7 43 43 H 1.08995 * 110.37157 * 155.84984 * 14 7 6 44 44 H 1.09004 * 110.36985 * 278.06511 * 14 7 6 45 45 H 0.96997 * 119.99777 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 1 1.7086 -1.7595 -1.2390 6 6 1.5121 -0.0144 -2.5156 7 6 2.7196 -0.0936 -3.4867 8 1 2.7531 -1.0597 -3.9903 9 7 2.6843 1.0050 -4.4613 10 6 3.9129 1.0155 -5.2960 11 6 3.4881 1.8327 -6.5419 12 6 2.0259 1.3841 -6.7673 13 6 1.5573 0.8406 -5.4048 14 6 3.9132 0.0664 -2.5125 15 7 3.5083 -0.6620 -1.2964 16 6 4.3453 -1.1866 -0.3795 17 8 3.9020 -1.8443 0.5432 18 6 5.7876 -0.9650 -0.4939 19 1 6.1812 -0.3816 -1.3131 20 6 6.6576 -1.5106 0.4586 21 7 6.1815 -2.2169 1.4495 22 14 8.4983 -1.2285 0.3123 23 1 8.7785 -0.4025 -0.8895 24 1 8.9888 -0.5233 1.5236 25 1 9.1909 -2.5360 0.1862 26 1 -0.3633 -1.0237 -0.0908 27 1 -0.3633 0.4332 0.9320 28 1 -0.3634 0.5904 -0.8410 29 1 1.8934 -0.5138 0.8900 30 1 1.7665 1.9245 0.9387 31 1 3.1247 1.4444 -0.1068 32 1 1.5920 1.9863 -0.8316 33 1 0.6529 -0.5463 -2.9243 34 1 1.2578 1.0234 -2.3003 35 1 4.7301 1.5107 -4.7715 36 1 4.1946 0.0013 -5.5788 37 1 4.1072 1.5756 -7.4014 38 1 3.5364 2.9027 -6.3397 39 1 1.9830 0.5994 -7.5226 40 1 1.4106 2.2320 -7.0682 41 1 1.2992 -0.2146 -5.4948 42 1 0.6936 1.4052 -5.0536 43 1 4.8129 -0.3774 -2.9386 44 1 4.0807 1.1198 -2.2875 45 1 6.7839 -2.5945 2.1093 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001159151056.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:43 Heat of formation + Delta-G solvation = -59.894992 kcal Electronic energy + Delta-G solvation = -23525.860355 eV Core-core repulsion = 20348.740476 eV Total energy + Delta-G solvation = -3177.119878 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = -0.18 seconds Orbital eigenvalues (eV) -41.12819 -39.35625 -37.73336 -35.33477 -34.64429 -33.00851 -30.49761 -29.71964 -28.39296 -28.16031 -27.74380 -24.54062 -23.15774 -21.95085 -21.47686 -21.16721 -19.64200 -18.41894 -17.72168 -17.47376 -16.85013 -16.34445 -15.99744 -15.65034 -15.35404 -14.80569 -14.69305 -14.24008 -14.23158 -13.82309 -13.72845 -13.57309 -13.30471 -13.09270 -12.92032 -12.84674 -12.74406 -12.49586 -12.39941 -12.26703 -12.13825 -11.99905 -11.95696 -11.78450 -11.61239 -11.47129 -11.34731 -11.21124 -10.95311 -9.80224 -9.38121 -9.03802 -8.30261 -6.85244 1.36214 1.36476 1.54032 2.21003 2.45047 2.68998 3.16620 3.49329 3.60047 3.75643 3.82958 4.02777 4.04628 4.10516 4.18683 4.25623 4.30498 4.42737 4.57328 4.59083 4.68370 4.69472 4.79080 4.82058 4.87936 4.91128 4.97587 5.02371 5.05187 5.07201 5.14014 5.14254 5.22809 5.29216 5.29741 5.31151 5.39491 5.48009 5.52930 5.70379 5.99543 6.05106 6.13557 6.46578 6.86135 7.50978 8.48066 8.67522 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.014891 B = 0.006065 C = 0.004585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.831777 B = 4615.253177 C = 6105.815208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.105 4.105 3 C -0.126 4.126 4 C 0.145 3.855 5 H 0.030 0.970 6 C -0.097 4.097 7 C 0.072 3.928 8 H 0.046 0.954 9 N -0.510 5.510 10 C 0.026 3.974 11 C -0.117 4.117 12 C -0.126 4.126 13 C 0.033 3.967 14 C 0.134 3.866 15 N -0.642 5.642 16 C 0.560 3.440 17 O -0.625 6.625 18 C -0.566 4.566 19 H 0.081 0.919 20 C 0.031 3.969 21 N -0.821 5.821 22 Si 0.993 3.007 23 H -0.248 1.248 24 H -0.267 1.267 25 H -0.267 1.267 26 H 0.050 0.950 27 H 0.058 0.942 28 H 0.080 0.920 29 H 0.027 0.973 30 H 0.050 0.950 31 H 0.026 0.974 32 H 0.078 0.922 33 H 0.091 0.909 34 H 0.098 0.902 35 H 0.076 0.924 36 H 0.039 0.961 37 H 0.083 0.917 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.085 0.915 41 H 0.042 0.958 42 H 0.087 0.913 43 H 0.051 0.949 44 H 0.056 0.944 45 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.087 9.377 -16.132 20.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.125 4.125 3 C -0.183 4.183 4 C 0.040 3.960 5 H 0.048 0.952 6 C -0.135 4.135 7 C -0.037 4.037 8 H 0.064 0.936 9 N -0.234 5.234 10 C -0.102 4.102 11 C -0.155 4.155 12 C -0.164 4.164 13 C -0.094 4.094 14 C 0.010 3.990 15 N -0.379 5.379 16 C 0.366 3.634 17 O -0.512 6.512 18 C -0.602 4.602 19 H 0.099 0.901 20 C -0.184 4.184 21 N -0.451 5.451 22 Si 0.812 3.188 23 H -0.171 1.171 24 H -0.192 1.192 25 H -0.192 1.192 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.098 0.902 29 H 0.045 0.955 30 H 0.069 0.931 31 H 0.045 0.955 32 H 0.096 0.904 33 H 0.109 0.891 34 H 0.117 0.883 35 H 0.094 0.906 36 H 0.057 0.943 37 H 0.101 0.899 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.103 0.897 41 H 0.060 0.940 42 H 0.105 0.895 43 H 0.069 0.931 44 H 0.074 0.926 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.312 9.354 -15.121 19.627 hybrid contribution 1.115 -1.291 0.245 1.723 sum -7.198 8.063 -14.876 18.388 Atomic orbital electron populations 1.21721 0.92411 1.01882 1.02746 1.21328 0.97224 0.96594 0.97312 1.21653 0.99911 0.95208 1.01563 1.21391 0.81759 0.97024 0.95800 0.95185 1.22666 0.96732 1.02275 0.91854 1.22823 0.95624 0.92449 0.92842 0.93615 1.64771 1.03677 1.40951 1.14031 1.23312 0.93302 0.99190 0.94368 1.22454 0.96228 1.00295 0.96476 1.22396 0.96478 1.01587 0.95910 1.22939 0.94571 0.99910 0.92028 1.21840 0.96385 0.95923 0.84844 1.48436 1.05121 1.59613 1.24682 1.18243 0.87161 0.78089 0.79905 1.90544 1.78902 1.45305 1.36406 1.21402 0.90247 1.35836 1.12749 0.90136 1.26933 1.06293 0.92107 0.93094 1.70196 1.38195 1.25983 1.10720 0.85044 0.75041 0.79065 0.79632 1.17123 1.19207 1.19176 0.93101 0.92255 0.90155 0.95471 0.93131 0.95511 0.90365 0.89072 0.88336 0.90585 0.94253 0.89860 0.90509 0.90852 0.89681 0.94004 0.89477 0.93086 0.92611 0.91645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.67 8.84 71.98 0.64 -3.03 16 2 C -0.10 -4.06 2.64 -10.79 -0.03 -4.09 16 3 C -0.13 -4.50 8.75 71.98 0.63 -3.87 16 4 C 0.14 5.78 2.67 45.34 0.12 5.90 16 5 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 6 C -0.10 -2.78 4.44 31.78 0.14 -2.64 16 7 C 0.07 2.15 2.39 46.30 0.11 2.26 16 8 H 0.05 1.43 8.01 -2.39 -0.02 1.41 16 9 N -0.51 -12.30 5.15 -849.78 -4.37 -16.67 16 10 C 0.03 0.58 5.89 86.65 0.51 1.09 16 11 C -0.12 -1.87 7.06 31.80 0.22 -1.64 16 12 C -0.13 -1.81 6.93 31.48 0.22 -1.59 16 13 C 0.03 0.61 6.23 86.45 0.54 1.15 16 14 C 0.13 5.17 5.25 86.85 0.46 5.62 16 15 N -0.64 -30.61 2.09 -793.10 -1.66 -32.27 16 16 C 0.56 33.78 7.53 86.36 0.65 34.43 16 17 O -0.62 -43.18 14.26 -4.29 -0.06 -43.24 16 18 C -0.57 -33.27 8.97 24.83 0.22 -33.05 16 19 H 0.08 4.35 6.77 -2.91 -0.02 4.33 16 20 C 0.03 1.76 5.50 85.31 0.47 2.22 16 21 N -0.82 -51.54 11.83 21.84 0.26 -51.28 16 22 Si 0.99 42.20 29.56 68.60 2.03 44.23 16 23 H -0.25 -9.80 7.11 99.48 0.71 -9.09 16 24 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 25 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 26 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 28 H 0.08 1.80 7.17 -2.39 -0.02 1.78 16 29 H 0.03 1.35 7.09 -2.39 -0.02 1.33 16 30 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 31 H 0.03 1.12 7.31 -2.39 -0.02 1.11 16 32 H 0.08 2.28 6.35 -2.39 -0.02 2.27 16 33 H 0.09 2.15 8.14 -2.39 -0.02 2.14 16 34 H 0.10 2.61 5.55 -2.39 -0.01 2.60 16 35 H 0.08 1.81 8.07 -2.39 -0.02 1.79 16 36 H 0.04 0.92 8.02 -2.39 -0.02 0.90 16 37 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 39 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.04 0.79 7.69 -2.39 -0.02 0.77 16 42 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.05 2.06 7.35 -2.39 -0.02 2.04 16 44 H 0.06 2.15 8.14 -2.38 -0.02 2.13 16 45 H 0.27 15.51 8.29 -92.71 -0.77 14.75 16 Total: -1.00 -77.09 344.54 2.04 -75.05 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: 0.95 Total: 21.40 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: 4.90 Total: 2.78 kcal Atomic # 7 Polarization: -94.45 SS G_CDS: -5.78 Total: -100.22 kcal Atomic # 8 Polarization: -43.18 SS G_CDS: -0.06 Total: -43.24 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.23 kcal Total: -77.09 2.04 -75.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159151056.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.159 kcal (2) G-P(sol) polarization free energy of solvation -77.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.18 seconds