Wall clock time and date at job start Tue Mar 31 2020 02:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47117 * 2 1 4 4 C 1.52998 * 109.46776 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47274 * 180.02562 * 4 3 2 6 6 C 1.36940 * 119.99843 * 264.55915 * 5 4 3 7 7 H 1.08004 * 119.99880 * 143.31213 * 6 5 4 8 8 C 1.38809 * 119.99839 * 323.30120 * 6 5 4 9 9 N 1.31616 * 120.00401 * 337.40291 * 8 6 5 10 10 Si 1.86806 * 119.99614 * 157.39898 * 8 6 5 11 11 H 1.48499 * 109.47211 * 0.02562 * 10 8 6 12 12 H 1.48498 * 109.47109 * 120.00349 * 10 8 6 13 13 H 1.48501 * 109.46880 * 240.00198 * 10 8 6 14 14 C 1.46500 * 119.99995 * 84.55033 * 5 4 3 15 15 H 1.08991 * 109.67317 * 359.50805 * 14 5 4 16 16 C 1.53346 * 109.70566 * 238.98639 * 14 5 4 17 17 C 1.53105 * 108.52857 * 172.55994 * 16 14 5 18 18 N 1.45751 * 110.38329 * 51.11584 * 17 16 14 19 19 C 1.46502 * 117.94537 * 160.74205 * 18 17 16 20 20 C 1.53006 * 117.49633 * 65.63785 * 19 18 17 21 21 C 1.53003 * 60.03183 * 252.52132 * 20 19 18 22 22 C 1.33354 * 124.11201 * 340.46817 * 18 17 16 23 23 O 1.21281 * 118.24956 * 182.48196 * 22 18 17 24 24 C 1.50172 * 123.50544 * 2.49684 * 22 18 17 25 25 H 1.08990 * 109.47476 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46992 * 299.99994 * 1 2 3 27 27 H 1.09006 * 109.47356 * 59.99222 * 1 2 3 28 28 H 1.09003 * 109.46425 * 240.00503 * 2 1 3 29 29 H 1.08993 * 109.47072 * 120.00801 * 2 1 3 30 30 H 1.09003 * 109.47062 * 60.00893 * 3 2 1 31 31 H 1.08992 * 109.47325 * 300.00125 * 3 2 1 32 32 H 1.09006 * 109.47217 * 60.00480 * 4 3 2 33 33 H 1.09005 * 109.47447 * 300.00039 * 4 3 2 34 34 H 0.96997 * 119.99861 * 179.97438 * 9 8 6 35 35 H 1.08998 * 109.60556 * 292.48168 * 16 14 5 36 36 H 1.08999 * 109.59772 * 52.80281 * 16 14 5 37 37 H 1.09000 * 109.49489 * 290.74313 * 17 16 14 38 38 H 1.08996 * 109.20217 * 171.30331 * 17 16 14 39 39 H 1.08998 * 115.56540 * 211.32448 * 19 18 17 40 40 H 1.08995 * 117.49751 * 145.02792 * 20 19 18 41 41 H 1.08998 * 117.49591 * 0.02562 * 20 19 18 42 42 H 1.09001 * 117.49922 * 107.47624 * 21 20 19 43 43 H 1.08996 * 117.50411 * 252.47736 * 21 20 19 44 44 H 1.08997 * 109.40186 * 102.54731 * 24 22 18 45 45 H 1.09004 * 109.40484 * 222.29225 * 24 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0584 2.8236 0.0000 6 6 4.3922 3.4323 -1.1804 7 1 4.1825 4.4819 -1.3249 8 6 5.0002 2.7003 -2.1911 9 7 5.6519 1.5941 -1.9018 10 14 4.8933 3.2855 -3.9619 11 1 4.1112 4.5465 -4.0202 12 1 6.2613 3.5273 -4.4867 13 1 4.2230 2.2481 -4.7864 14 6 4.1896 3.5536 1.2633 15 1 3.8721 2.9174 2.0894 16 6 3.3225 4.8177 1.2225 17 6 3.3312 5.4588 2.6128 18 7 4.6994 5.6218 3.0881 19 6 4.9411 6.5809 4.1689 20 6 4.3283 6.2730 5.5367 21 6 3.7457 7.3935 4.6730 22 6 5.7442 4.9489 2.6046 23 8 6.8307 5.1349 3.1104 24 6 5.6475 3.9733 1.4670 25 1 -0.3634 -1.0275 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5140 -0.8899 28 1 1.8932 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 1.6768 1.9563 0.8901 31 1 1.6767 1.9563 -0.8899 32 1 3.9329 0.9287 -0.8909 33 1 3.9337 0.9284 0.8891 34 1 6.0765 1.0825 -2.6081 35 1 3.7287 5.5163 0.4910 36 1 2.3019 4.5523 0.9471 37 1 2.7810 4.8256 3.3088 38 1 2.8493 6.4350 2.5605 39 1 5.9135 7.0730 4.1523 40 1 4.8976 6.5627 6.4199 41 1 3.7458 5.3567 5.6325 42 1 2.7801 7.2143 4.2002 43 1 3.9315 8.4203 4.9881 44 1 6.0201 4.4414 0.5559 45 1 6.2496 3.0931 1.6926 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172027601.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:08:42 Heat of formation + Delta-G solvation = -1.293518 kcal Electronic energy + Delta-G solvation = -23111.627887 eV Core-core repulsion = 19937.049160 eV Total energy + Delta-G solvation = -3174.578728 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.22748 -37.10594 -36.86638 -34.94479 -33.61985 -31.83375 -30.14049 -29.12270 -27.61559 -24.77296 -23.93354 -22.71273 -22.11688 -21.59835 -20.45930 -19.97061 -18.12303 -16.94433 -16.20293 -16.02549 -15.39011 -14.87150 -14.54068 -14.51789 -14.05916 -13.79625 -13.61056 -13.32453 -13.17014 -12.67363 -12.32256 -12.15248 -11.91709 -11.71727 -11.35333 -11.31373 -11.20142 -11.05942 -10.90725 -10.77794 -10.56325 -10.49155 -10.38406 -10.29273 -10.14776 -9.99863 -9.72808 -9.49475 -9.15278 -8.49444 -8.29048 -6.63445 -5.85282 -3.40534 3.06873 3.20354 3.32544 3.42438 3.43684 3.86630 4.41885 4.72651 4.88731 4.91573 5.06228 5.15468 5.24684 5.29790 5.47222 5.48476 5.51553 5.57421 5.67528 5.73517 5.81600 5.94074 5.98434 5.99518 6.04810 6.08567 6.13975 6.24215 6.39920 6.44045 6.50159 6.53008 6.59359 6.76457 6.81665 6.85112 6.94321 6.99492 7.23599 7.68293 7.78468 7.83127 8.45704 8.61343 9.13812 9.75962 10.34219 11.15905 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.014389 B = 0.005650 C = 0.004563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.444763 B = 4954.965583 C = 6135.508933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.122 4.122 3 C -0.134 4.134 4 C 0.150 3.850 5 N -0.576 5.576 6 C -0.262 4.262 7 H 0.062 0.938 8 C 0.017 3.983 9 N -0.882 5.882 10 Si 0.892 3.108 11 H -0.276 1.276 12 H -0.290 1.290 13 H -0.288 1.288 14 C 0.175 3.825 15 H 0.054 0.946 16 C -0.142 4.142 17 C 0.114 3.886 18 N -0.580 5.580 19 C 0.079 3.921 20 C -0.193 4.193 21 C -0.189 4.189 22 C 0.524 3.476 23 O -0.566 6.566 24 C -0.136 4.136 25 H 0.044 0.956 26 H 0.048 0.952 27 H 0.050 0.950 28 H 0.058 0.942 29 H 0.052 0.948 30 H 0.041 0.959 31 H 0.057 0.943 32 H 0.093 0.907 33 H 0.020 0.980 34 H 0.255 0.745 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.057 0.943 38 H 0.070 0.930 39 H 0.128 0.872 40 H 0.097 0.903 41 H 0.094 0.906 42 H 0.101 0.899 43 H 0.100 0.900 44 H 0.111 0.889 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.440 4.799 9.156 13.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.161 4.161 3 C -0.174 4.174 4 C 0.024 3.976 5 N -0.295 5.295 6 C -0.392 4.392 7 H 0.080 0.920 8 C -0.184 4.184 9 N -0.523 5.523 10 Si 0.721 3.279 11 H -0.201 1.201 12 H -0.217 1.217 13 H -0.214 1.214 14 C 0.067 3.933 15 H 0.072 0.928 16 C -0.182 4.182 17 C -0.009 4.009 18 N -0.312 5.312 19 C -0.026 4.026 20 C -0.231 4.231 21 C -0.227 4.227 22 C 0.315 3.685 23 O -0.445 6.445 24 C -0.177 4.177 25 H 0.063 0.937 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.059 0.941 31 H 0.075 0.925 32 H 0.110 0.890 33 H 0.038 0.962 34 H 0.065 0.935 35 H 0.091 0.909 36 H 0.098 0.902 37 H 0.075 0.925 38 H 0.088 0.912 39 H 0.146 0.854 40 H 0.116 0.884 41 H 0.113 0.887 42 H 0.119 0.881 43 H 0.119 0.881 44 H 0.129 0.871 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.764 4.718 9.241 12.959 hybrid contribution -0.140 0.258 -0.951 0.995 sum -7.903 4.976 8.290 12.488 Atomic orbital electron populations 1.21768 0.97015 1.00479 1.01287 1.21480 0.94628 0.98604 1.01343 1.22210 1.00320 0.94256 1.00627 1.20932 0.89131 0.86071 1.01427 1.43889 1.73586 1.11388 1.00639 1.18950 1.33951 0.95435 0.90841 0.92041 1.25150 0.96069 0.98042 0.99170 1.70050 1.32945 1.17681 1.31644 0.86412 0.77468 0.78405 0.85583 1.20087 1.21679 1.21437 1.20415 0.90811 0.91914 0.90179 0.92773 1.22391 1.02342 0.99554 0.93870 1.21520 0.81974 1.00596 0.96803 1.46914 1.08353 1.40322 1.35639 1.21625 0.98027 0.95143 0.87764 1.23316 1.04559 0.99899 0.95368 1.23348 0.98243 0.96991 1.04090 1.20829 0.82822 0.80748 0.84116 1.90633 1.27096 1.66386 1.60430 1.22171 1.01783 0.97766 0.95991 0.93683 0.93326 0.93091 0.92362 0.92878 0.94069 0.92458 0.88963 0.96184 0.93542 0.90939 0.90204 0.92482 0.91198 0.85447 0.88422 0.88706 0.88092 0.88142 0.87147 0.89030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.91 37.16 0.37 -1.57 16 2 C -0.12 -1.91 5.93 -26.73 -0.16 -2.06 16 3 C -0.13 -2.43 5.54 -26.73 -0.15 -2.58 16 4 C 0.15 3.25 5.18 -4.04 -0.02 3.23 16 5 N -0.58 -12.87 2.39 -165.41 -0.40 -13.27 16 6 C -0.26 -6.51 8.03 -15.06 -0.12 -6.64 16 7 H 0.06 1.53 7.03 -52.48 -0.37 1.17 16 8 C 0.02 0.44 4.87 -17.43 -0.08 0.35 16 9 N -0.88 -24.15 11.57 55.49 0.64 -23.51 16 10 Si 0.89 20.69 29.61 -169.99 -5.03 15.66 16 11 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 13 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 14 C 0.18 3.34 2.71 -67.71 -0.18 3.16 16 15 H 0.05 1.00 7.86 -51.93 -0.41 0.59 16 16 C -0.14 -2.29 5.12 -26.50 -0.14 -2.42 16 17 C 0.11 1.53 5.54 -4.39 -0.02 1.51 16 18 N -0.58 -9.11 3.14 -167.22 -0.53 -9.64 16 19 C 0.08 1.08 5.91 -67.89 -0.40 0.68 16 20 C -0.19 -2.15 10.36 -26.73 -0.28 -2.43 16 21 C -0.19 -1.90 9.66 -26.69 -0.26 -2.16 16 22 C 0.52 10.08 7.47 -11.87 -0.09 9.99 16 23 O -0.57 -12.54 16.42 5.56 0.09 -12.44 16 24 C -0.14 -2.75 5.47 -28.10 -0.15 -2.90 16 25 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.09 2.30 5.58 -51.93 -0.29 2.01 16 33 H 0.02 0.42 8.04 -51.93 -0.42 0.01 16 34 H 0.25 6.79 8.31 -40.82 -0.34 6.45 16 35 H 0.07 1.28 7.31 -51.93 -0.38 0.90 16 36 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.80 6.40 -51.93 -0.33 0.47 16 39 H 0.13 1.87 7.61 -51.93 -0.40 1.47 16 40 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.10 0.95 6.18 -51.93 -0.32 0.63 16 43 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.11 2.47 7.32 -51.93 -0.38 2.09 16 45 H 0.09 1.99 8.14 -51.93 -0.42 1.56 16 LS Contribution 353.65 15.07 5.33 5.33 Total: -1.00 -28.44 353.65 -9.50 -37.94 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -7.92 Total: 3.77 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: -1.69 Total: -3.84 kcal Atomic # 7 Polarization: -46.13 SS G_CDS: -0.28 Total: -46.41 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: 0.09 Total: -12.44 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.03 Total: 15.66 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -28.44 -9.50 -37.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172027601.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.645 kcal (2) G-P(sol) polarization free energy of solvation -28.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds