Wall clock time and date at job start Tue Mar 31 2020 03:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50697 * 120.00246 * 2 1 4 4 H 1.09004 * 109.47080 * 359.97438 * 3 2 1 5 5 C 1.52999 * 109.47352 * 119.99787 * 3 2 1 6 6 C 1.52994 * 109.47004 * 295.00161 * 5 3 2 7 7 C 1.53000 * 109.47016 * 239.99730 * 3 2 1 8 8 C 1.50706 * 109.46995 * 65.00023 * 7 3 2 9 9 O 1.21281 * 120.00160 * 359.97438 * 8 7 3 10 10 N 1.34777 * 119.99667 * 180.02562 * 8 7 3 11 11 C 1.47425 * 125.65136 * 359.95409 * 10 8 7 12 12 C 1.54915 * 104.83334 * 204.16738 * 11 10 8 13 13 C 1.55165 * 101.57980 * 322.99105 * 12 11 10 14 14 H 1.08993 * 110.71917 * 277.13865 * 13 12 11 15 15 N 1.46496 * 110.71696 * 153.86336 * 13 12 11 16 16 C 1.36944 * 119.99797 * 91.48124 * 15 13 12 17 17 H 1.08000 * 119.99870 * 359.97438 * 16 15 13 18 18 C 1.38812 * 119.99694 * 179.97438 * 16 15 13 19 19 N 1.31615 * 120.00520 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99672 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47380 * 59.99573 * 20 18 16 22 22 H 1.48493 * 109.47031 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47212 * 299.99750 * 20 18 16 24 24 C 1.47022 * 125.64528 * 180.02562 * 10 8 7 25 25 H 1.09000 * 110.01436 * 298.39230 * 24 10 8 26 26 C 1.53005 * 109.88592 * 59.48467 * 24 10 8 27 27 H 1.07998 * 120.00191 * 179.97438 * 1 2 3 28 28 H 1.07997 * 119.99400 * 0.02562 * 1 2 3 29 29 H 1.08000 * 119.99736 * 179.97438 * 2 1 3 30 30 H 1.09000 * 109.46829 * 54.99963 * 5 3 2 31 31 H 1.08993 * 109.47107 * 174.99913 * 5 3 2 32 32 H 1.09001 * 109.47045 * 180.02562 * 6 5 3 33 33 H 1.09009 * 109.47011 * 299.99496 * 6 5 3 34 34 H 1.08998 * 109.47852 * 59.99879 * 6 5 3 35 35 H 1.08997 * 109.47171 * 305.00484 * 7 3 2 36 36 H 1.09002 * 109.47527 * 184.99885 * 7 3 2 37 37 H 1.08997 * 110.36855 * 323.00479 * 11 10 8 38 38 H 1.08997 * 110.36655 * 85.33352 * 11 10 8 39 39 H 1.08995 * 111.00392 * 204.91661 * 12 11 10 40 40 H 1.09001 * 111.00387 * 81.05917 * 12 11 10 41 41 H 0.96998 * 120.00196 * 271.47234 * 15 13 12 42 42 H 0.96995 * 120.00000 * 180.02562 * 19 18 16 43 43 H 1.08993 * 109.47167 * 177.80428 * 26 24 10 44 44 H 1.09000 * 109.46800 * 297.80932 * 26 24 10 45 45 H 1.09003 * 109.46659 * 57.80603 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 1 1.3553 2.1336 -0.0005 5 6 2.9432 1.3861 1.2492 6 6 2.0565 1.4307 2.4952 7 6 2.9433 1.3860 -1.2492 8 6 2.0699 1.4299 -2.4766 9 8 0.8628 1.3989 -2.3634 10 7 2.6303 1.5025 -3.7002 11 6 4.0768 1.5467 -3.9815 12 6 4.1908 2.2320 -5.3661 13 6 2.9508 1.6575 -6.1010 14 1 3.1704 0.6744 -6.5172 15 7 2.4975 2.5760 -7.1484 16 6 2.9750 2.4474 -8.4254 17 1 3.6860 1.6691 -8.6603 18 6 2.5450 3.3173 -9.4180 19 7 1.6782 4.2655 -9.1319 20 14 3.1969 3.1424 -11.1598 21 1 2.8491 1.7979 -11.6858 22 1 2.5864 4.1845 -12.0238 23 1 4.6729 3.3052 -11.1547 24 6 1.9003 1.5522 -4.9754 25 1 1.3102 0.6447 -5.1031 26 6 0.9835 2.7768 -5.0028 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5399 0.9353 -0.0004 29 1 1.8500 -0.9353 0.0004 30 1 3.5906 0.5104 1.2952 31 1 3.5541 2.2877 1.2055 32 1 2.6831 1.4889 3.3852 33 1 1.4091 2.3065 2.4493 34 1 1.4455 0.5291 2.5390 35 1 3.5906 0.5103 -1.2951 36 1 3.5542 2.2876 -1.2056 37 1 4.5929 2.1355 -3.2232 38 1 4.4862 0.5374 -4.0230 39 1 5.1127 1.9426 -5.8705 40 1 4.1220 3.3158 -5.2725 41 1 1.8591 3.2751 -6.9374 42 1 1.3775 4.8731 -9.8256 43 1 0.4752 2.8286 -5.9656 44 1 0.2446 2.6953 -4.2056 45 1 1.5777 3.6788 -4.8566 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001179384607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:08:06 Heat of formation + Delta-G solvation = -11.633075 kcal Electronic energy + Delta-G solvation = -22572.478620 eV Core-core repulsion = 19397.451535 eV Total energy + Delta-G solvation = -3175.027085 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.05623 -37.99837 -36.38038 -34.15375 -31.88713 -31.78640 -30.70276 -30.28592 -28.61918 -25.19886 -24.93649 -23.31362 -22.36238 -21.72910 -19.88194 -19.33748 -18.47752 -17.52252 -16.69043 -15.82378 -15.43246 -15.12229 -14.65401 -14.48235 -14.07374 -14.04243 -13.68538 -13.24311 -13.20816 -12.74453 -12.43588 -12.30596 -12.03957 -11.97129 -11.70540 -11.51114 -11.44874 -11.31858 -11.14030 -10.95861 -10.91200 -10.80270 -10.57131 -10.42443 -10.21948 -9.99473 -9.71921 -9.52174 -9.02705 -8.94610 -8.29402 -7.02867 -5.81937 -3.11756 2.46282 2.93465 3.25205 3.41184 3.46039 3.46948 4.54976 4.55954 4.65723 4.76467 5.02832 5.07430 5.12748 5.25623 5.28180 5.36279 5.41599 5.42180 5.57516 5.57785 5.64115 5.66737 5.74466 5.76311 5.80520 5.87731 5.97178 6.07464 6.09956 6.12996 6.19796 6.25699 6.36020 6.57436 6.60484 6.74140 6.75715 6.88413 6.95624 7.01262 7.65131 7.88225 8.36486 8.48973 9.48076 10.03531 10.38536 11.40464 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.041216 B = 0.003336 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.192185 B = 8391.853833 C = 8672.887993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.151 4.151 3 C -0.044 4.044 4 H 0.081 0.919 5 C -0.116 4.116 6 C -0.151 4.151 7 C -0.130 4.130 8 C 0.524 3.476 9 O -0.535 6.535 10 N -0.612 5.612 11 C 0.099 3.901 12 C -0.155 4.155 13 C 0.173 3.827 14 H 0.064 0.936 15 N -0.716 5.716 16 C -0.246 4.246 17 H 0.071 0.929 18 C -0.010 4.010 19 N -0.931 5.931 20 Si 0.909 3.091 21 H -0.285 1.285 22 H -0.291 1.291 23 H -0.286 1.286 24 C 0.128 3.872 25 H 0.068 0.932 26 C -0.157 4.157 27 H 0.088 0.912 28 H 0.095 0.905 29 H 0.099 0.901 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.051 0.949 33 H 0.053 0.947 34 H 0.057 0.943 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.391 0.609 42 H 0.257 0.743 43 H 0.078 0.922 44 H 0.059 0.941 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.375 -6.636 19.780 21.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.169 4.169 3 C -0.063 4.063 4 H 0.099 0.901 5 C -0.153 4.153 6 C -0.208 4.208 7 C -0.170 4.170 8 C 0.312 3.688 9 O -0.412 6.412 10 N -0.347 5.347 11 C -0.025 4.025 12 C -0.196 4.196 13 C 0.061 3.939 14 H 0.082 0.918 15 N -0.359 5.359 16 C -0.377 4.377 17 H 0.089 0.911 18 C -0.207 4.207 19 N -0.579 5.579 20 Si 0.740 3.260 21 H -0.212 1.212 22 H -0.217 1.217 23 H -0.212 1.212 24 C 0.024 3.976 25 H 0.086 0.914 26 C -0.215 4.215 27 H 0.106 0.894 28 H 0.114 0.886 29 H 0.117 0.883 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.108 0.892 36 H 0.109 0.891 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.229 0.771 42 H 0.067 0.933 43 H 0.097 0.903 44 H 0.078 0.922 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.733 -6.675 19.718 21.150 hybrid contribution 0.344 0.152 -1.065 1.130 sum 4.078 -6.523 18.653 20.177 Atomic orbital electron populations 1.23677 0.95928 1.01234 0.99189 1.22600 0.95971 0.96994 1.01335 1.20157 0.96583 0.97082 0.92474 0.90096 1.21536 0.97861 1.01877 0.94062 1.21757 0.99820 1.02148 0.97077 1.21690 0.98646 1.03945 0.92694 1.20237 0.88789 0.76445 0.83296 1.90680 1.14644 1.49935 1.85979 1.48659 1.07806 1.72558 1.05662 1.22342 0.81368 1.00222 0.98557 1.23557 1.01522 1.01002 0.93511 1.21178 0.90344 0.94506 0.87841 0.91769 1.42654 1.52643 1.35617 1.05019 1.19212 1.20503 1.12311 0.85638 0.91124 1.24756 0.99541 0.98138 0.98244 1.69646 1.35019 1.20215 1.33024 0.86249 0.78221 0.77096 0.84473 1.21215 1.21684 1.21233 1.21829 0.94192 0.98807 0.82790 0.91365 1.21985 0.99597 0.97082 1.02825 0.89355 0.88631 0.88262 0.91919 0.91861 0.93024 0.92807 0.92418 0.89246 0.89111 0.91494 0.91852 0.90690 0.90786 0.77117 0.93314 0.90321 0.92217 0.92787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.94 13.22 29.01 0.38 -1.56 16 2 C -0.15 -1.68 6.76 -36.03 -0.24 -1.93 16 3 C -0.04 -0.46 1.82 -91.77 -0.17 -0.63 16 4 H 0.08 0.98 7.60 -51.93 -0.39 0.58 16 5 C -0.12 -0.93 5.39 -26.73 -0.14 -1.08 16 6 C -0.15 -1.17 9.73 37.15 0.36 -0.81 16 7 C -0.13 -1.39 4.17 -27.88 -0.12 -1.50 16 8 C 0.52 7.87 7.38 -10.98 -0.08 7.79 16 9 O -0.54 -9.63 13.07 5.56 0.07 -9.56 16 10 N -0.61 -9.39 3.08 -163.01 -0.50 -9.89 16 11 C 0.10 1.27 6.69 -2.53 -0.02 1.25 16 12 C -0.15 -2.51 6.77 -24.57 -0.17 -2.67 16 13 C 0.17 3.35 3.49 -66.09 -0.23 3.12 16 14 H 0.06 1.24 8.09 -51.93 -0.42 0.82 16 15 N -0.72 -17.39 4.94 -51.65 -0.25 -17.65 16 16 C -0.25 -6.61 9.96 -15.06 -0.15 -6.76 16 17 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 18 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 19 N -0.93 -27.64 13.06 55.49 0.72 -26.92 16 20 Si 0.91 21.95 29.55 -169.99 -5.02 16.93 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 24 C 0.13 2.30 3.48 -66.95 -0.23 2.07 16 25 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 26 C -0.16 -3.02 7.93 37.16 0.29 -2.72 16 27 H 0.09 0.95 8.06 -52.49 -0.42 0.53 16 28 H 0.10 1.21 7.83 -52.49 -0.41 0.80 16 29 H 0.10 1.01 8.06 -52.49 -0.42 0.59 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.05 0.43 8.14 -51.92 -0.42 0.01 16 34 H 0.06 0.47 7.38 -51.93 -0.38 0.09 16 35 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.09 0.84 7.85 -51.93 -0.41 0.44 16 37 H 0.07 0.71 7.48 -51.93 -0.39 0.33 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 40 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 41 H 0.39 10.07 5.06 -40.82 -0.21 9.86 16 42 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 43 H 0.08 1.66 6.76 -51.93 -0.35 1.31 16 44 H 0.06 1.15 6.77 -51.93 -0.35 0.80 16 45 H 0.05 1.06 8.04 -51.93 -0.42 0.64 16 LS Contribution 355.68 15.07 5.36 5.36 Total: -1.00 -30.42 355.68 -8.16 -38.58 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: -7.93 Total: 8.97 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: -0.60 Total: -5.81 kcal Atomic # 7 Polarization: -54.43 SS G_CDS: -0.03 Total: -54.46 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.07 Total: -9.56 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.42 -8.16 -38.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179384607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.945 kcal (2) G-P(sol) polarization free energy of solvation -30.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds