Wall clock time and date at job start Tue Mar 31 2020 03:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50697 * 120.00246 * 2 1 4 4 H 1.09004 * 109.47080 * 359.97438 * 3 2 1 5 5 C 1.52999 * 109.47352 * 119.99787 * 3 2 1 6 6 C 1.52994 * 109.47004 * 295.00161 * 5 3 2 7 7 C 1.53000 * 109.47016 * 239.99730 * 3 2 1 8 8 C 1.50706 * 109.46995 * 65.00023 * 7 3 2 9 9 O 1.21281 * 120.00160 * 359.97438 * 8 7 3 10 10 N 1.34777 * 119.99667 * 180.02562 * 8 7 3 11 11 C 1.47425 * 125.65136 * 359.95409 * 10 8 7 12 12 C 1.54915 * 104.83334 * 204.16738 * 11 10 8 13 13 C 1.55165 * 101.57980 * 322.99105 * 12 11 10 14 14 H 1.08993 * 110.71917 * 277.13865 * 13 12 11 15 15 N 1.46496 * 110.71696 * 153.86336 * 13 12 11 16 16 C 1.36944 * 119.99797 * 91.48124 * 15 13 12 17 17 H 1.08000 * 119.99870 * 359.97438 * 16 15 13 18 18 C 1.38812 * 119.99694 * 179.97438 * 16 15 13 19 19 N 1.31615 * 120.00520 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99672 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47380 * 59.99573 * 20 18 16 22 22 H 1.48493 * 109.47031 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47212 * 299.99750 * 20 18 16 24 24 C 1.47022 * 125.64528 * 180.02562 * 10 8 7 25 25 H 1.09000 * 110.01436 * 298.39230 * 24 10 8 26 26 C 1.53005 * 109.88592 * 59.48467 * 24 10 8 27 27 H 1.07998 * 120.00191 * 179.97438 * 1 2 3 28 28 H 1.07997 * 119.99400 * 0.02562 * 1 2 3 29 29 H 1.08000 * 119.99736 * 179.97438 * 2 1 3 30 30 H 1.09000 * 109.46829 * 54.99963 * 5 3 2 31 31 H 1.08993 * 109.47107 * 174.99913 * 5 3 2 32 32 H 1.09001 * 109.47045 * 180.02562 * 6 5 3 33 33 H 1.09009 * 109.47011 * 299.99496 * 6 5 3 34 34 H 1.08998 * 109.47852 * 59.99879 * 6 5 3 35 35 H 1.08997 * 109.47171 * 305.00484 * 7 3 2 36 36 H 1.09002 * 109.47527 * 184.99885 * 7 3 2 37 37 H 1.08997 * 110.36855 * 323.00479 * 11 10 8 38 38 H 1.08997 * 110.36655 * 85.33352 * 11 10 8 39 39 H 1.08995 * 111.00392 * 204.91661 * 12 11 10 40 40 H 1.09001 * 111.00387 * 81.05917 * 12 11 10 41 41 H 0.96998 * 120.00196 * 271.47234 * 15 13 12 42 42 H 0.96995 * 120.00000 * 180.02562 * 19 18 16 43 43 H 1.08993 * 109.47167 * 177.80428 * 26 24 10 44 44 H 1.09000 * 109.46800 * 297.80932 * 26 24 10 45 45 H 1.09003 * 109.46659 * 57.80603 * 26 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 1 1.3553 2.1336 -0.0005 5 6 2.9432 1.3861 1.2492 6 6 2.0565 1.4307 2.4952 7 6 2.9433 1.3860 -1.2492 8 6 2.0699 1.4299 -2.4766 9 8 0.8628 1.3989 -2.3634 10 7 2.6303 1.5025 -3.7002 11 6 4.0768 1.5467 -3.9815 12 6 4.1908 2.2320 -5.3661 13 6 2.9508 1.6575 -6.1010 14 1 3.1704 0.6744 -6.5172 15 7 2.4975 2.5760 -7.1484 16 6 2.9750 2.4474 -8.4254 17 1 3.6860 1.6691 -8.6603 18 6 2.5450 3.3173 -9.4180 19 7 1.6782 4.2655 -9.1319 20 14 3.1969 3.1424 -11.1598 21 1 2.8491 1.7979 -11.6858 22 1 2.5864 4.1845 -12.0238 23 1 4.6729 3.3052 -11.1547 24 6 1.9003 1.5522 -4.9754 25 1 1.3102 0.6447 -5.1031 26 6 0.9835 2.7768 -5.0028 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5399 0.9353 -0.0004 29 1 1.8500 -0.9353 0.0004 30 1 3.5906 0.5104 1.2952 31 1 3.5541 2.2877 1.2055 32 1 2.6831 1.4889 3.3852 33 1 1.4091 2.3065 2.4493 34 1 1.4455 0.5291 2.5390 35 1 3.5906 0.5103 -1.2951 36 1 3.5542 2.2876 -1.2056 37 1 4.5929 2.1355 -3.2232 38 1 4.4862 0.5374 -4.0230 39 1 5.1127 1.9426 -5.8705 40 1 4.1220 3.3158 -5.2725 41 1 1.8591 3.2751 -6.9374 42 1 1.3775 4.8731 -9.8256 43 1 0.4752 2.8286 -5.9656 44 1 0.2446 2.6953 -4.2056 45 1 1.5777 3.6788 -4.8566 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001179384607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:08:04 Heat of formation + Delta-G solvation = -28.987993 kcal Electronic energy + Delta-G solvation = -22573.231186 eV Core-core repulsion = 19397.451535 eV Total energy + Delta-G solvation = -3175.779650 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.29120 -39.21596 -37.38324 -35.88426 -33.53174 -32.58349 -32.12897 -31.46616 -30.08368 -26.76193 -26.04700 -25.01279 -23.54422 -22.49035 -21.08356 -20.40719 -19.73662 -19.44920 -17.93471 -17.07135 -16.61495 -16.49864 -15.97839 -15.74095 -15.34897 -15.25090 -14.76726 -14.61638 -14.40850 -13.90919 -13.82017 -13.57394 -13.24714 -13.06605 -12.98909 -12.86986 -12.82904 -12.74698 -12.49542 -12.14980 -12.10916 -12.05096 -11.99319 -11.65400 -11.58623 -11.50853 -11.32090 -10.90282 -10.70719 -9.98790 -9.54705 -9.00975 -7.93521 -5.22672 1.49146 1.51924 1.57195 1.57860 1.79526 2.06106 2.58245 3.37161 3.56289 3.81508 3.85979 3.90746 3.95848 3.99584 4.22378 4.38187 4.40288 4.42930 4.43927 4.48873 4.58204 4.60889 4.68267 4.70849 4.76713 4.86934 4.93072 5.03837 5.07537 5.09417 5.10613 5.21562 5.22115 5.28637 5.38034 5.43267 5.49838 5.53537 5.55365 5.85784 6.09378 6.27984 6.71170 7.31510 7.35146 8.09246 8.32706 9.30018 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.041216 B = 0.003336 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.192185 B = 8391.853833 C = 8672.887993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.146 4.146 3 C -0.044 4.044 4 H 0.056 0.944 5 C -0.109 4.109 6 C -0.152 4.152 7 C -0.120 4.120 8 C 0.516 3.484 9 O -0.573 6.573 10 N -0.614 5.614 11 C 0.106 3.894 12 C -0.146 4.146 13 C 0.164 3.836 14 H 0.067 0.933 15 N -0.732 5.732 16 C -0.241 4.241 17 H 0.081 0.919 18 C -0.076 4.076 19 N -0.972 5.972 20 Si 0.974 3.026 21 H -0.279 1.279 22 H -0.300 1.300 23 H -0.275 1.275 24 C 0.135 3.865 25 H 0.057 0.943 26 C -0.141 4.141 27 H 0.094 0.906 28 H 0.077 0.923 29 H 0.115 0.885 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.044 0.956 34 H 0.050 0.950 35 H 0.118 0.882 36 H 0.114 0.886 37 H 0.102 0.898 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.054 0.946 41 H 0.380 0.620 42 H 0.250 0.750 43 H 0.052 0.948 44 H 0.054 0.946 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.351 -8.014 21.232 23.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.163 4.163 3 C -0.063 4.063 4 H 0.075 0.925 5 C -0.146 4.146 6 C -0.209 4.209 7 C -0.160 4.160 8 C 0.306 3.694 9 O -0.452 6.452 10 N -0.348 5.348 11 C -0.016 4.016 12 C -0.187 4.187 13 C 0.054 3.946 14 H 0.085 0.915 15 N -0.375 5.375 16 C -0.372 4.372 17 H 0.099 0.901 18 C -0.268 4.268 19 N -0.622 5.622 20 Si 0.803 3.197 21 H -0.205 1.205 22 H -0.226 1.226 23 H -0.201 1.201 24 C 0.029 3.971 25 H 0.075 0.925 26 C -0.199 4.199 27 H 0.113 0.887 28 H 0.096 0.904 29 H 0.133 0.867 30 H 0.097 0.903 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.136 0.864 36 H 0.133 0.867 37 H 0.120 0.880 38 H 0.110 0.890 39 H 0.105 0.895 40 H 0.073 0.927 41 H 0.215 0.785 42 H 0.059 0.941 43 H 0.071 0.929 44 H 0.073 0.927 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 6.765 -8.098 21.215 23.694 hybrid contribution -0.612 0.533 -1.440 1.653 sum 6.153 -7.565 19.775 22.049 Atomic orbital electron populations 1.23681 0.96636 1.00776 1.01035 1.22852 0.95766 0.98073 0.99654 1.20165 0.96576 0.95716 0.93846 0.92543 1.21505 0.97508 1.03237 0.92393 1.21767 0.99918 1.01426 0.97834 1.21748 0.98113 1.06327 0.89776 1.21153 0.88947 0.75213 0.84066 1.90679 1.16650 1.51403 1.86465 1.48727 1.08696 1.72663 1.04727 1.22494 0.79923 1.02027 0.97142 1.23363 0.99967 0.99977 0.95379 1.21395 0.92041 0.93817 0.87300 0.91512 1.42835 1.52765 1.36283 1.05573 1.19641 1.19404 1.11516 0.86656 0.90092 1.25567 1.00590 0.98517 1.02152 1.69817 1.37112 1.21532 1.33763 0.85204 0.77903 0.76781 0.79807 1.20509 1.22646 1.20097 1.21520 0.93814 0.97355 0.84364 0.92486 1.21787 0.99468 0.97651 1.01017 0.88743 0.90404 0.86672 0.90328 0.90593 0.91621 0.93683 0.93125 0.86415 0.86749 0.87985 0.89025 0.89450 0.92697 0.78456 0.94098 0.92926 0.92700 0.93513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.40 13.22 67.78 0.90 -3.50 16 2 C -0.15 -3.01 6.76 25.64 0.17 -2.83 16 3 C -0.04 -0.82 1.82 -11.54 -0.02 -0.84 16 4 H 0.06 1.33 7.60 -2.38 -0.02 1.32 16 5 C -0.11 -1.39 5.39 30.59 0.16 -1.22 16 6 C -0.15 -2.06 9.73 71.98 0.70 -1.36 16 7 C -0.12 -2.11 4.17 29.85 0.12 -1.98 16 8 C 0.52 14.44 7.38 87.66 0.65 15.08 16 9 O -0.57 -20.51 13.07 -3.03 -0.04 -20.55 16 10 N -0.61 -17.46 3.08 -788.02 -2.43 -19.89 16 11 C 0.11 2.29 6.69 86.86 0.58 2.87 16 12 C -0.15 -4.39 6.77 31.99 0.22 -4.18 16 13 C 0.16 6.22 3.49 46.18 0.16 6.39 16 14 H 0.07 2.49 8.09 -2.39 -0.02 2.47 16 15 N -0.73 -36.04 4.94 -317.32 -1.57 -37.60 16 16 C -0.24 -12.94 9.96 84.03 0.84 -12.10 16 17 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 18 C -0.08 -4.31 5.50 84.86 0.47 -3.84 16 19 N -0.97 -59.31 13.06 21.65 0.28 -59.03 16 20 Si 0.97 45.43 29.55 68.60 2.03 47.46 16 21 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 22 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 23 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 24 C 0.13 4.83 3.48 45.34 0.16 4.98 16 25 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 26 C -0.14 -5.62 7.93 71.98 0.57 -5.05 16 27 H 0.09 2.05 8.06 -2.91 -0.02 2.02 16 28 H 0.08 2.09 7.83 -2.91 -0.02 2.07 16 29 H 0.12 2.01 8.06 -2.91 -0.02 1.98 16 30 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.04 0.68 8.14 -2.38 -0.02 0.66 16 34 H 0.05 0.75 7.38 -2.39 -0.02 0.73 16 35 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.11 1.54 7.85 -2.39 -0.02 1.52 16 37 H 0.10 1.58 7.48 -2.39 -0.02 1.57 16 38 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 40 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.38 20.27 5.06 -92.71 -0.47 19.80 16 42 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 43 H 0.05 2.35 6.76 -2.39 -0.02 2.33 16 44 H 0.05 2.20 6.77 -2.39 -0.02 2.19 16 45 H 0.05 1.89 8.04 -2.39 -0.02 1.87 16 Total: -1.00 -68.16 355.68 4.42 -63.74 By element: Atomic # 1 Polarization: 32.98 SS G_CDS: 0.47 Total: 33.45 kcal Atomic # 6 Polarization: -13.26 SS G_CDS: 5.68 Total: -7.58 kcal Atomic # 7 Polarization: -112.81 SS G_CDS: -3.71 Total: -116.52 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: -0.04 Total: -20.55 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -68.16 4.42 -63.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179384607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.753 kcal (2) G-P(sol) polarization free energy of solvation -68.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds