Wall clock time and date at job start Tue Mar 31 2020 02:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47090 * 2 1 4 4 C 1.52999 * 109.47090 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47380 * 180.02562 * 4 3 2 6 6 C 1.37096 * 120.00037 * 89.99394 * 5 4 3 7 7 H 1.08002 * 119.99926 * 233.09102 * 6 5 4 8 8 C 1.38952 * 119.99694 * 52.82544 * 6 5 4 9 9 N 1.31403 * 120.00307 * 11.98636 * 8 6 5 10 10 Si 1.86803 * 119.99810 * 191.99250 * 8 6 5 11 11 H 1.48503 * 109.47194 * 359.97438 * 10 8 6 12 12 H 1.48491 * 109.47496 * 119.99550 * 10 8 6 13 13 H 1.48501 * 109.46861 * 239.99740 * 10 8 6 14 14 C 1.34776 * 119.99842 * 270.00033 * 5 4 3 15 15 O 1.21297 * 119.99944 * 355.40596 * 14 5 4 16 16 C 1.50707 * 120.00085 * 175.40605 * 14 5 4 17 17 C 1.53392 * 110.11199 * 290.53124 * 16 14 5 18 18 C 1.54783 * 107.98640 * 179.57138 * 17 16 14 19 19 N 1.46945 * 109.55291 * 0.73115 * 18 17 16 20 20 C 1.46908 * 111.05606 * 61.54896 * 19 18 17 21 21 C 1.53139 * 109.37358 * 298.00113 * 20 19 18 22 22 C 1.46944 * 110.97056 * 297.50345 * 19 18 17 23 23 C 1.53127 * 109.35309 * 62.09022 * 22 19 18 24 24 H 1.08997 * 109.47068 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47401 * 300.00099 * 1 2 3 26 26 H 1.09000 * 109.47138 * 60.00284 * 1 2 3 27 27 H 1.09004 * 109.47288 * 239.99732 * 2 1 3 28 28 H 1.08998 * 109.47228 * 120.00257 * 2 1 3 29 29 H 1.08994 * 109.47224 * 60.00233 * 3 2 1 30 30 H 1.09000 * 109.46898 * 299.99863 * 3 2 1 31 31 H 1.09004 * 109.47288 * 59.99732 * 4 3 2 32 32 H 1.09000 * 109.47138 * 299.99715 * 4 3 2 33 33 H 0.97003 * 119.99976 * 6.45925 * 9 8 6 34 34 H 1.08998 * 109.57894 * 300.17042 * 17 16 14 35 35 H 1.09006 * 109.56945 * 60.55244 * 17 16 14 36 36 H 1.09002 * 109.71951 * 240.50198 * 18 17 16 37 37 H 1.08997 * 109.07518 * 120.56543 * 18 17 16 38 38 H 1.08997 * 109.48573 * 178.02762 * 20 19 18 39 39 H 1.09000 * 109.50070 * 57.97879 * 20 19 18 40 40 H 1.08996 * 109.57577 * 240.20022 * 21 20 19 41 41 H 1.08997 * 109.58170 * 119.80208 * 21 20 19 42 42 H 1.08999 * 109.48777 * 182.05232 * 22 19 18 43 43 H 1.08999 * 109.49281 * 302.10071 * 22 19 18 44 44 H 1.09000 * 109.57317 * 240.13163 * 23 22 19 45 45 H 1.09002 * 109.57916 * 119.74701 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0584 2.8237 0.0013 6 6 4.2863 3.4696 1.1888 7 1 3.8332 4.4321 1.3756 8 6 5.0956 2.8835 2.1543 9 7 5.8280 1.8358 1.8499 10 14 5.1424 3.5848 3.8850 11 1 4.2338 4.7565 3.9691 12 1 4.7030 2.5469 4.8518 13 1 6.5279 4.0091 4.2099 14 6 4.2835 3.4593 -1.1657 15 8 4.1620 2.8625 -2.2147 16 6 4.6861 4.9116 -1.1672 17 6 3.5087 5.7859 -0.7175 18 6 3.9778 7.2609 -0.7265 19 7 5.3753 7.3298 -1.1757 20 6 5.5155 6.8162 -2.5449 21 6 5.1035 5.3417 -2.5792 22 6 6.2615 6.6117 -0.2492 23 6 5.8713 5.1313 -0.2185 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.6767 1.9563 0.8899 30 1 1.6766 1.9563 -0.8900 31 1 3.9337 0.9285 -0.8891 32 1 3.9329 0.9288 0.8909 33 1 5.8767 1.5284 0.9312 34 1 2.6687 5.6454 -1.3977 35 1 3.2126 5.5073 0.2939 36 1 3.8974 7.6786 0.2770 37 1 3.3478 7.8308 -1.4094 38 1 6.5532 6.9114 -2.8645 39 1 4.8746 7.3885 -3.2156 40 1 5.9456 4.7349 -2.9119 41 1 4.2648 5.2125 -3.2632 42 1 7.2939 6.7088 -0.5848 43 1 6.1626 7.0351 0.7503 44 1 5.5848 4.8502 0.7949 45 1 6.7163 4.5240 -0.5429 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181546869.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:09:13 Heat of formation + Delta-G solvation = -41.230739 kcal Electronic energy + Delta-G solvation = -24279.695277 eV Core-core repulsion = 21103.384741 eV Total energy + Delta-G solvation = -3176.310536 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.63083 -38.15818 -35.56758 -34.25323 -31.87264 -31.31900 -30.47808 -30.37391 -28.31735 -24.82854 -23.87159 -22.60607 -22.37110 -22.04866 -20.61011 -19.56411 -18.09914 -16.69258 -15.96872 -15.84601 -15.24766 -14.96967 -14.65862 -14.30068 -13.96365 -13.72454 -13.08193 -12.74310 -12.57178 -12.43143 -12.37577 -12.12553 -12.02474 -11.84136 -11.67460 -11.57565 -11.45829 -11.26776 -10.99069 -10.70934 -10.67816 -10.61958 -10.35019 -10.03305 -10.01796 -9.71469 -9.63459 -9.52114 -8.85240 -8.57414 -7.81571 -7.64404 -6.56213 -4.24448 3.23875 3.25394 3.39121 3.79067 4.12901 4.33393 4.64033 4.96524 5.11117 5.18937 5.36215 5.37838 5.49107 5.53816 5.57227 5.64948 5.74493 5.77910 5.78694 5.89123 5.94507 6.13827 6.15878 6.17730 6.21327 6.24184 6.26666 6.31917 6.36277 6.44945 6.53281 6.57494 6.61358 6.64753 6.71445 6.87282 6.92174 7.02208 7.27619 7.44678 7.49496 7.76348 7.94615 8.37589 8.95782 9.40160 9.78172 10.60227 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.014132 B = 0.007995 C = 0.005955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.776175 B = 3501.266634 C = 4700.990091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.121 4.121 3 C -0.123 4.123 4 C 0.108 3.892 5 N -0.455 5.455 6 C -0.412 4.412 7 H 0.081 0.919 8 C 0.014 3.986 9 N -0.877 5.877 10 Si 1.072 2.928 11 H -0.282 1.282 12 H -0.282 1.282 13 H -0.283 1.283 14 C 0.498 3.502 15 O -0.601 6.601 16 C -0.048 4.048 17 C -0.140 4.140 18 C 0.058 3.942 19 N -0.534 5.534 20 C 0.056 3.944 21 C -0.128 4.128 22 C 0.054 3.946 23 C -0.158 4.158 24 H 0.048 0.952 25 H 0.052 0.948 26 H 0.050 0.950 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.051 0.949 31 H 0.056 0.944 32 H 0.078 0.922 33 H 0.278 0.722 34 H 0.056 0.944 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.061 0.939 41 H 0.063 0.937 42 H 0.065 0.935 43 H 0.072 0.928 44 H 0.129 0.871 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.834 5.741 -1.372 7.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.159 4.159 3 C -0.161 4.161 4 C -0.015 4.015 5 N -0.175 5.175 6 C -0.540 4.540 7 H 0.098 0.902 8 C -0.195 4.195 9 N -0.510 5.510 10 Si 0.898 3.102 11 H -0.207 1.207 12 H -0.208 1.208 13 H -0.209 1.209 14 C 0.287 3.713 15 O -0.486 6.486 16 C -0.052 4.052 17 C -0.179 4.179 18 C -0.071 4.071 19 N -0.254 5.254 20 C -0.073 4.073 21 C -0.168 4.168 22 C -0.075 4.075 23 C -0.197 4.197 24 H 0.067 0.933 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.097 0.903 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.103 0.897 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.080 0.920 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.090 0.910 44 H 0.147 0.853 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.105 5.688 -0.357 6.490 hybrid contribution -0.877 -0.799 -1.559 1.959 sum -3.983 4.889 -1.915 6.590 Atomic orbital electron populations 1.21744 0.96417 1.00815 1.01520 1.21454 0.95240 0.97594 1.01620 1.21838 0.97145 0.95650 1.01500 1.21392 0.92442 0.86026 1.01666 1.43393 1.57490 1.11601 1.04977 1.20142 1.32245 1.06882 0.94718 0.90156 1.26442 0.91954 0.96055 1.05024 1.70622 1.34314 1.23110 1.22905 0.83432 0.76775 0.75915 0.74067 1.20737 1.20796 1.20880 1.20465 0.78234 0.88655 0.83899 1.90514 1.56998 1.68608 1.32497 1.20218 0.96546 0.92967 0.95453 1.22545 0.96891 0.95468 1.03043 1.22427 0.88866 0.95060 1.00715 1.62567 1.06551 1.53912 1.02409 1.22172 1.01226 0.93492 0.90375 1.22045 1.01647 0.96607 0.96457 1.22247 0.96040 0.92981 0.96187 1.22717 0.96155 0.95645 1.05135 0.93295 0.92918 0.93121 0.92468 0.92156 0.91932 0.93030 0.92571 0.90327 0.91026 0.92550 0.89727 0.90747 0.91461 0.91186 0.91276 0.91992 0.91840 0.91665 0.90987 0.85324 0.93072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.91 37.16 0.37 -1.66 16 2 C -0.12 -1.98 5.93 -26.73 -0.16 -2.14 16 3 C -0.12 -2.41 5.54 -26.73 -0.15 -2.56 16 4 C 0.11 2.48 4.47 -4.04 -0.02 2.46 16 5 N -0.46 -10.90 2.08 -114.81 -0.24 -11.14 16 6 C -0.41 -9.73 5.39 -14.93 -0.08 -9.81 16 7 H 0.08 1.86 4.96 -52.49 -0.26 1.60 16 8 C 0.01 0.35 4.66 -17.47 -0.08 0.27 16 9 N -0.88 -23.23 12.62 55.50 0.70 -22.53 16 10 Si 1.07 21.73 29.94 -169.99 -5.09 16.64 16 11 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 12 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 13 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 14 C 0.50 11.98 6.54 -10.98 -0.07 11.91 16 15 O -0.60 -15.95 15.61 5.54 0.09 -15.87 16 16 C -0.05 -0.97 0.52 -155.05 -0.08 -1.05 16 17 C -0.14 -2.53 5.05 -25.59 -0.13 -2.66 16 18 C 0.06 0.88 6.13 -2.86 -0.02 0.87 16 19 N -0.53 -8.41 5.22 -233.21 -1.22 -9.63 16 20 C 0.06 0.86 6.10 -3.75 -0.02 0.84 16 21 C -0.13 -2.37 4.41 -26.46 -0.12 -2.48 16 22 C 0.05 0.88 6.09 -3.73 -0.02 0.86 16 23 C -0.16 -3.14 4.59 -26.46 -0.12 -3.26 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 28 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.06 1.35 7.37 -51.93 -0.38 0.96 16 32 H 0.08 1.90 6.24 -51.93 -0.32 1.57 16 33 H 0.28 7.67 6.93 -40.82 -0.28 7.39 16 34 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.08 1.62 5.43 -51.93 -0.28 1.34 16 36 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 40 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.06 1.21 8.05 -51.93 -0.42 0.79 16 42 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 44 H 0.13 2.80 4.20 -51.93 -0.22 2.58 16 45 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 335.57 15.07 5.06 5.06 Total: -1.00 -27.32 335.57 -9.13 -36.45 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: -7.73 Total: 9.44 kcal Atomic # 6 Polarization: -7.72 SS G_CDS: -0.70 Total: -8.42 kcal Atomic # 7 Polarization: -42.54 SS G_CDS: -0.76 Total: -43.29 kcal Atomic # 8 Polarization: -15.95 SS G_CDS: 0.09 Total: -15.87 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.09 Total: 16.64 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -27.32 -9.13 -36.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181546869.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.785 kcal (2) G-P(sol) polarization free energy of solvation -27.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds