Wall clock time and date at job start Tue Mar 31 2020 02:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47090 * 2 1 4 4 C 1.52999 * 109.47090 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47380 * 180.02562 * 4 3 2 6 6 C 1.37096 * 120.00037 * 89.99394 * 5 4 3 7 7 H 1.08002 * 119.99926 * 233.09102 * 6 5 4 8 8 C 1.38952 * 119.99694 * 52.82544 * 6 5 4 9 9 N 1.31403 * 120.00307 * 11.98636 * 8 6 5 10 10 Si 1.86803 * 119.99810 * 191.99250 * 8 6 5 11 11 H 1.48503 * 109.47194 * 359.97438 * 10 8 6 12 12 H 1.48491 * 109.47496 * 119.99550 * 10 8 6 13 13 H 1.48501 * 109.46861 * 239.99740 * 10 8 6 14 14 C 1.34776 * 119.99842 * 270.00033 * 5 4 3 15 15 O 1.21297 * 119.99944 * 355.40596 * 14 5 4 16 16 C 1.50707 * 120.00085 * 175.40605 * 14 5 4 17 17 C 1.53392 * 110.11199 * 290.53124 * 16 14 5 18 18 C 1.54783 * 107.98640 * 179.57138 * 17 16 14 19 19 N 1.46945 * 109.55291 * 0.73115 * 18 17 16 20 20 C 1.46908 * 111.05606 * 61.54896 * 19 18 17 21 21 C 1.53139 * 109.37358 * 298.00113 * 20 19 18 22 22 C 1.46944 * 110.97056 * 297.50345 * 19 18 17 23 23 C 1.53127 * 109.35309 * 62.09022 * 22 19 18 24 24 H 1.08997 * 109.47068 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47401 * 300.00099 * 1 2 3 26 26 H 1.09000 * 109.47138 * 60.00284 * 1 2 3 27 27 H 1.09004 * 109.47288 * 239.99732 * 2 1 3 28 28 H 1.08998 * 109.47228 * 120.00257 * 2 1 3 29 29 H 1.08994 * 109.47224 * 60.00233 * 3 2 1 30 30 H 1.09000 * 109.46898 * 299.99863 * 3 2 1 31 31 H 1.09004 * 109.47288 * 59.99732 * 4 3 2 32 32 H 1.09000 * 109.47138 * 299.99715 * 4 3 2 33 33 H 0.97003 * 119.99976 * 6.45925 * 9 8 6 34 34 H 1.08998 * 109.57894 * 300.17042 * 17 16 14 35 35 H 1.09006 * 109.56945 * 60.55244 * 17 16 14 36 36 H 1.09002 * 109.71951 * 240.50198 * 18 17 16 37 37 H 1.08997 * 109.07518 * 120.56543 * 18 17 16 38 38 H 1.08997 * 109.48573 * 178.02762 * 20 19 18 39 39 H 1.09000 * 109.50070 * 57.97879 * 20 19 18 40 40 H 1.08996 * 109.57577 * 240.20022 * 21 20 19 41 41 H 1.08997 * 109.58170 * 119.80208 * 21 20 19 42 42 H 1.08999 * 109.48777 * 182.05232 * 22 19 18 43 43 H 1.08999 * 109.49281 * 302.10071 * 22 19 18 44 44 H 1.09000 * 109.57317 * 240.13163 * 23 22 19 45 45 H 1.09002 * 109.57916 * 119.74701 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0584 2.8237 0.0013 6 6 4.2863 3.4696 1.1888 7 1 3.8332 4.4321 1.3756 8 6 5.0956 2.8835 2.1543 9 7 5.8280 1.8358 1.8499 10 14 5.1424 3.5848 3.8850 11 1 4.2338 4.7565 3.9691 12 1 4.7030 2.5469 4.8518 13 1 6.5279 4.0091 4.2099 14 6 4.2835 3.4593 -1.1657 15 8 4.1620 2.8625 -2.2147 16 6 4.6861 4.9116 -1.1672 17 6 3.5087 5.7859 -0.7175 18 6 3.9778 7.2609 -0.7265 19 7 5.3753 7.3298 -1.1757 20 6 5.5155 6.8162 -2.5449 21 6 5.1035 5.3417 -2.5792 22 6 6.2615 6.6117 -0.2492 23 6 5.8713 5.1313 -0.2185 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.6767 1.9563 0.8899 30 1 1.6766 1.9563 -0.8900 31 1 3.9337 0.9285 -0.8891 32 1 3.9329 0.9288 0.8909 33 1 5.8767 1.5284 0.9312 34 1 2.6687 5.6454 -1.3977 35 1 3.2126 5.5073 0.2939 36 1 3.8974 7.6786 0.2770 37 1 3.3478 7.8308 -1.4094 38 1 6.5532 6.9114 -2.8645 39 1 4.8746 7.3885 -3.2156 40 1 5.9456 4.7349 -2.9119 41 1 4.2648 5.2125 -3.2632 42 1 7.2939 6.7088 -0.5848 43 1 6.1626 7.0351 0.7503 44 1 5.5848 4.8502 0.7949 45 1 6.7163 4.5240 -0.5429 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181546869.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:09:13 Heat of formation + Delta-G solvation = -56.827769 kcal Electronic energy + Delta-G solvation = -24280.371615 eV Core-core repulsion = 21103.384741 eV Total energy + Delta-G solvation = -3176.986874 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.20466 -39.89354 -37.42731 -35.84564 -33.48254 -33.09081 -31.87796 -31.77899 -29.89040 -26.72296 -25.42412 -23.98583 -23.82956 -23.52713 -22.12379 -21.41420 -19.80131 -18.38058 -17.52056 -17.23884 -16.95814 -16.58700 -16.25056 -16.02382 -15.65468 -15.34540 -14.51121 -14.38370 -13.95776 -13.95002 -13.85901 -13.69663 -13.48683 -13.44400 -13.09477 -13.05808 -12.86667 -12.77593 -12.59564 -12.25883 -12.22448 -12.05375 -11.86849 -11.65277 -11.49650 -11.40673 -11.17609 -11.08932 -10.64492 -10.44699 -9.64609 -9.19186 -8.52521 -6.21201 1.59258 1.60730 1.81312 1.92187 2.42567 2.76807 3.06770 3.17417 3.70115 3.71114 3.87271 3.94308 4.04846 4.17724 4.20322 4.28736 4.31776 4.34945 4.36056 4.42470 4.47812 4.62019 4.72816 4.74234 4.78995 4.85270 4.87332 4.93088 4.95592 5.01581 5.05578 5.09484 5.19008 5.19409 5.22250 5.28175 5.33987 5.36726 5.65261 5.83024 5.98638 6.14599 6.17705 6.36484 7.03923 7.47633 7.85668 8.60829 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.014132 B = 0.007995 C = 0.005955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.776175 B = 3501.266634 C = 4700.990091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.117 4.117 3 C -0.108 4.108 4 C 0.110 3.890 5 N -0.464 5.464 6 C -0.403 4.403 7 H 0.091 0.909 8 C -0.024 4.024 9 N -0.905 5.905 10 Si 1.115 2.885 11 H -0.254 1.254 12 H -0.284 1.284 13 H -0.281 1.281 14 C 0.481 3.519 15 O -0.637 6.637 16 C -0.052 4.052 17 C -0.134 4.134 18 C 0.063 3.937 19 N -0.525 5.525 20 C 0.063 3.937 21 C -0.124 4.124 22 C 0.060 3.940 23 C -0.150 4.150 24 H 0.071 0.929 25 H 0.058 0.942 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.038 0.962 31 H 0.033 0.967 32 H 0.063 0.937 33 H 0.257 0.743 34 H 0.051 0.949 35 H 0.071 0.929 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.094 0.906 40 H 0.039 0.961 41 H 0.053 0.947 42 H 0.078 0.922 43 H 0.089 0.911 44 H 0.110 0.890 45 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.861 8.284 -0.500 9.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.156 4.156 3 C -0.147 4.147 4 C -0.013 4.013 5 N -0.182 5.182 6 C -0.530 4.530 7 H 0.108 0.892 8 C -0.226 4.226 9 N -0.539 5.539 10 Si 0.935 3.065 11 H -0.178 1.178 12 H -0.210 1.210 13 H -0.206 1.206 14 C 0.271 3.729 15 O -0.525 6.525 16 C -0.056 4.056 17 C -0.173 4.173 18 C -0.065 4.065 19 N -0.245 5.245 20 C -0.066 4.066 21 C -0.163 4.163 22 C -0.068 4.068 23 C -0.189 4.189 24 H 0.090 0.910 25 H 0.077 0.923 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.082 0.918 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.090 0.910 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.102 0.898 39 H 0.112 0.888 40 H 0.058 0.942 41 H 0.072 0.928 42 H 0.096 0.904 43 H 0.107 0.893 44 H 0.128 0.872 45 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -4.151 8.250 0.514 9.250 hybrid contribution -0.548 -1.668 -1.899 2.586 sum -4.699 6.583 -1.385 8.205 Atomic orbital electron populations 1.21696 0.93802 1.02493 1.01882 1.21437 0.97471 0.94976 1.01673 1.21700 0.94431 0.97983 1.00596 1.21359 0.94691 0.85575 0.99708 1.43655 1.57312 1.11856 1.05412 1.20351 1.31465 1.07025 0.94150 0.89175 1.27748 0.91066 0.95493 1.08305 1.70765 1.36610 1.25093 1.21426 0.82913 0.77402 0.76214 0.69926 1.17766 1.21007 1.20648 1.21328 0.77654 0.90552 0.83343 1.90473 1.58545 1.69868 1.33566 1.20282 0.97713 0.90659 0.96906 1.22513 0.95681 0.97254 1.01851 1.22529 0.88681 0.92770 1.02561 1.62627 1.06684 1.52906 1.02240 1.22235 1.02656 0.90888 0.90812 1.22032 1.00404 0.98940 0.94950 1.22242 0.96925 0.90097 0.97568 1.22585 0.94796 0.98107 1.03437 0.90985 0.92320 0.93004 0.92660 0.91924 0.92093 0.94343 0.94795 0.91842 0.93277 0.92982 0.91030 0.89016 0.89037 0.89791 0.88814 0.94177 0.92795 0.90402 0.89303 0.87224 0.96070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.66 9.91 71.98 0.71 -2.95 16 2 C -0.12 -3.83 5.93 30.59 0.18 -3.65 16 3 C -0.11 -4.38 5.54 30.59 0.17 -4.21 16 4 C 0.11 5.31 4.47 86.38 0.39 5.70 16 5 N -0.46 -23.08 2.08 -635.52 -1.32 -24.40 16 6 C -0.40 -19.24 5.39 84.04 0.45 -18.79 16 7 H 0.09 4.12 4.96 -2.91 -0.01 4.11 16 8 C -0.02 -1.15 4.66 84.93 0.40 -0.76 16 9 N -0.90 -49.61 12.62 21.66 0.27 -49.33 16 10 Si 1.11 42.92 29.94 68.60 2.05 44.98 16 11 H -0.25 -8.58 7.11 99.48 0.71 -7.88 16 12 H -0.28 -11.02 7.11 99.48 0.71 -10.31 16 13 H -0.28 -10.69 7.11 99.48 0.71 -9.98 16 14 C 0.48 24.05 6.54 87.66 0.57 24.62 16 15 O -0.64 -35.55 15.61 -3.08 -0.05 -35.60 16 16 C -0.05 -2.11 0.52 -52.53 -0.03 -2.13 16 17 C -0.13 -4.63 5.05 31.33 0.16 -4.47 16 18 C 0.06 1.69 6.13 86.90 0.53 2.22 16 19 N -0.52 -14.64 5.22 -891.74 -4.65 -19.29 16 20 C 0.06 1.74 6.10 86.35 0.53 2.27 16 21 C -0.12 -4.54 4.41 30.77 0.14 -4.41 16 22 C 0.06 1.82 6.09 86.34 0.53 2.35 16 23 C -0.15 -5.95 4.59 30.77 0.14 -5.81 16 24 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 25 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 28 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 30 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.03 1.74 7.37 -2.38 -0.02 1.72 16 32 H 0.06 3.23 6.24 -2.39 -0.01 3.22 16 33 H 0.26 15.00 6.93 -92.71 -0.64 14.36 16 34 H 0.05 1.82 8.14 -2.39 -0.02 1.81 16 35 H 0.07 2.65 5.43 -2.38 -0.01 2.63 16 36 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 37 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 39 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 40 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.05 2.05 8.05 -2.39 -0.02 2.03 16 42 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 43 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 44 H 0.11 4.75 4.20 -2.39 -0.01 4.74 16 45 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -61.71 335.57 2.25 -59.47 By element: Atomic # 1 Polarization: 33.11 SS G_CDS: 1.08 Total: 34.19 kcal Atomic # 6 Polarization: -14.88 SS G_CDS: 4.87 Total: -10.01 kcal Atomic # 7 Polarization: -87.32 SS G_CDS: -5.70 Total: -93.02 kcal Atomic # 8 Polarization: -35.55 SS G_CDS: -0.05 Total: -35.60 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.05 Total: 44.98 kcal Total: -61.71 2.25 -59.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181546869.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.640 kcal (2) G-P(sol) polarization free energy of solvation -61.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds