Wall clock time and date at job start Tue Mar 31 2020 02:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.47344 * 2 1 4 4 C 1.52992 * 109.47344 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47114 * 180.02562 * 4 3 2 6 6 C 1.37101 * 120.00554 * 90.00275 * 5 4 3 7 7 H 1.07998 * 120.00039 * 219.89002 * 6 5 4 8 8 C 1.38952 * 119.99757 * 39.88254 * 6 5 4 9 9 N 1.31408 * 119.99958 * 18.28342 * 8 6 5 10 10 Si 1.86798 * 119.99955 * 198.00757 * 8 6 5 11 11 H 1.48494 * 109.47216 * 270.28112 * 10 8 6 12 12 H 1.48506 * 109.47228 * 30.27700 * 10 8 6 13 13 H 1.48493 * 109.47136 * 150.27679 * 10 8 6 14 14 C 1.34780 * 119.99710 * 269.99966 * 5 4 3 15 15 O 1.21290 * 120.00013 * 354.97693 * 14 5 4 16 16 C 1.50703 * 120.00047 * 174.97700 * 14 5 4 17 17 H 1.09008 * 109.57297 * 57.13442 * 16 14 5 18 18 C 1.53135 * 109.57808 * 296.74149 * 16 14 5 19 19 N 1.46911 * 109.36626 * 240.18478 * 18 16 14 20 20 C 1.46942 * 111.05771 * 298.00499 * 19 18 16 21 21 C 1.53123 * 109.35031 * 61.96319 * 20 19 18 22 22 C 1.53382 * 109.57997 * 177.39474 * 16 14 5 23 23 C 1.53391 * 108.59817 * 60.84959 * 22 16 14 24 24 C 1.46947 * 111.05766 * 62.00581 * 19 18 16 25 25 H 1.09004 * 109.47341 * 299.99953 * 1 2 3 26 26 H 1.08998 * 109.47717 * 60.00161 * 1 2 3 27 27 H 1.09004 * 109.47142 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47341 * 240.00047 * 2 1 3 29 29 H 1.09007 * 109.47447 * 119.99853 * 2 1 3 30 30 H 1.09004 * 109.46863 * 59.99754 * 3 2 1 31 31 H 1.08994 * 109.46746 * 300.00087 * 3 2 1 32 32 H 1.09004 * 109.47341 * 60.00047 * 4 3 2 33 33 H 1.09007 * 109.47447 * 299.99853 * 4 3 2 34 34 H 0.96999 * 119.99817 * 174.68833 * 9 8 6 35 35 H 1.09000 * 109.48966 * 0.15096 * 18 16 14 36 36 H 1.08995 * 109.49224 * 120.21702 * 18 16 14 37 37 H 1.08997 * 109.49158 * 302.00381 * 20 19 18 38 38 H 1.08996 * 109.49068 * 181.92883 * 20 19 18 39 39 H 1.08995 * 109.57768 * 240.24161 * 21 20 19 40 40 H 1.09003 * 109.57026 * 119.85836 * 21 20 19 41 41 H 1.09002 * 110.11653 * 299.41653 * 22 16 14 42 42 H 1.09000 * 109.58096 * 178.80976 * 23 22 16 43 43 H 1.09000 * 109.57575 * 299.19697 * 23 22 16 44 44 H 1.09005 * 109.48768 * 58.01023 * 24 19 18 45 45 H 1.09002 * 109.48959 * 178.07862 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 7 4.0582 2.8237 0.0013 6 6 4.2863 3.4697 1.1888 7 1 4.0179 4.5102 1.2978 8 6 4.8627 2.7858 2.2522 9 7 5.5108 1.6631 2.0374 10 14 4.7228 3.4664 3.9862 11 1 5.8715 4.3672 4.2586 12 1 3.4546 4.2278 4.1183 13 1 4.7309 2.3454 4.9600 14 6 4.2833 3.4594 -1.1657 15 8 4.1695 2.8605 -2.2143 16 6 4.6765 4.9142 -1.1677 17 1 5.5803 5.0491 -0.5733 18 6 3.5403 5.7536 -0.5766 19 7 3.0750 6.7197 -1.5809 20 6 4.1491 7.6494 -1.9566 21 6 5.3028 6.8638 -2.5864 22 6 4.9349 5.3748 -2.6077 23 6 3.6429 5.2016 -3.4161 24 6 2.5356 6.0337 -2.7632 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6766 1.9562 -0.8899 32 1 3.9337 0.9285 -0.8891 33 1 3.9329 0.9288 0.8909 34 1 5.9784 1.2259 2.7661 35 1 2.7158 5.1002 -0.2913 36 1 3.9019 6.2880 0.3018 37 1 4.5062 8.1706 -1.0684 38 1 3.7676 8.3744 -2.6755 39 1 6.2078 7.0081 -1.9964 40 1 5.4692 7.2135 -3.6053 41 1 5.7463 4.7945 -3.0471 42 1 3.8028 5.5445 -4.4383 43 1 3.3542 4.1505 -3.4224 44 1 1.7178 5.3788 -2.4622 45 1 2.1674 6.7720 -3.4756 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182015619.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:09:29 Heat of formation + Delta-G solvation = -40.977749 kcal Electronic energy + Delta-G solvation = -24030.805433 eV Core-core repulsion = 20854.505867 eV Total energy + Delta-G solvation = -3176.299565 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.60131 -37.99532 -35.32181 -33.97077 -31.72287 -31.56059 -30.76679 -30.48954 -28.14870 -24.97777 -23.78845 -22.62991 -22.49618 -21.99027 -20.40613 -19.11631 -17.33830 -16.77385 -16.31576 -15.86143 -15.33620 -14.99365 -14.72590 -14.45379 -13.83278 -13.82224 -13.12440 -12.68954 -12.41268 -12.35889 -12.21932 -12.05415 -11.83415 -11.68210 -11.65961 -11.48324 -11.32273 -11.14615 -10.99203 -10.85460 -10.58871 -10.48765 -10.42025 -10.32490 -10.13481 -9.89551 -9.70024 -9.64735 -9.04042 -8.30374 -7.75347 -7.41123 -6.36591 -4.08606 3.09238 3.19795 3.23069 3.90354 4.10419 4.40030 4.67567 4.97033 5.00833 5.23711 5.36288 5.48349 5.53456 5.57813 5.61215 5.65926 5.66845 5.74801 5.83009 5.90910 6.04375 6.07979 6.12337 6.18924 6.24482 6.30692 6.36528 6.37755 6.40125 6.50104 6.62976 6.64930 6.70480 6.74083 6.79106 6.83120 6.96673 7.16393 7.35875 7.45396 7.48935 7.55049 8.02244 8.38693 9.08574 9.54443 9.98158 10.65764 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.013626 B = 0.007484 C = 0.005682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.434265 B = 3740.527287 C = 4926.739850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.126 4.126 4 C 0.114 3.886 5 N -0.438 5.438 6 C -0.342 4.342 7 H 0.092 0.908 8 C 0.046 3.954 9 N -0.862 5.862 10 Si 0.910 3.090 11 H -0.277 1.277 12 H -0.267 1.267 13 H -0.282 1.282 14 C 0.481 3.519 15 O -0.602 6.602 16 C -0.117 4.117 17 H 0.090 0.910 18 C 0.072 3.928 19 N -0.534 5.534 20 C 0.054 3.946 21 C -0.150 4.150 22 C -0.065 4.065 23 C -0.158 4.158 24 C 0.055 3.945 25 H 0.051 0.949 26 H 0.050 0.950 27 H 0.046 0.954 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.049 0.951 32 H 0.052 0.948 33 H 0.102 0.898 34 H 0.269 0.731 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.074 0.926 42 H 0.049 0.951 43 H 0.102 0.898 44 H 0.069 0.931 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.162 5.637 -3.682 7.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.158 4.158 3 C -0.164 4.164 4 C -0.010 4.010 5 N -0.155 5.155 6 C -0.470 4.470 7 H 0.110 0.890 8 C -0.160 4.160 9 N -0.499 5.499 10 Si 0.737 3.263 11 H -0.203 1.203 12 H -0.192 1.192 13 H -0.208 1.208 14 C 0.270 3.730 15 O -0.488 6.488 16 C -0.140 4.140 17 H 0.109 0.891 18 C -0.056 4.056 19 N -0.254 5.254 20 C -0.075 4.075 21 C -0.189 4.189 22 C -0.084 4.084 23 C -0.197 4.197 24 C -0.073 4.073 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.120 0.880 34 H 0.080 0.920 35 H 0.099 0.901 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.093 0.907 42 H 0.068 0.932 43 H 0.120 0.880 44 H 0.088 0.912 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.582 5.432 -3.803 8.060 hybrid contribution 0.880 -0.216 0.700 1.145 sum -3.702 5.216 -3.103 7.109 Atomic orbital electron populations 1.21754 0.96644 1.00657 1.01467 1.21431 0.94953 0.97810 1.01570 1.21893 0.97988 0.95382 1.01168 1.21386 0.90967 0.85288 1.03340 1.43371 1.55755 1.11882 1.04465 1.19517 1.41659 0.97183 0.88677 0.89035 1.25407 0.94504 0.95934 1.00146 1.69841 1.28917 1.18083 1.33043 0.86193 0.79096 0.78654 0.82401 1.20271 1.19172 1.20778 1.20299 0.79937 0.88718 0.84049 1.90419 1.57973 1.68479 1.31948 1.21658 1.01042 0.94576 0.96691 0.89147 1.22158 0.96645 0.93038 0.93769 1.62619 1.32370 1.18625 1.11775 1.22149 0.90595 0.94897 0.99822 1.22300 0.99356 0.96364 1.00916 1.20856 0.98143 0.94336 0.95086 1.22469 0.95475 1.04057 0.97703 1.22143 0.97065 0.96477 0.91607 0.93021 0.93121 0.93451 0.92486 0.92253 0.92254 0.93263 0.92918 0.87990 0.92030 0.90050 0.90442 0.90996 0.91340 0.91930 0.92154 0.90720 0.93239 0.87989 0.91239 0.91680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.91 37.15 0.37 -1.72 16 2 C -0.12 -2.01 5.93 -26.73 -0.16 -2.17 16 3 C -0.13 -2.52 5.54 -26.73 -0.15 -2.67 16 4 C 0.11 2.68 5.04 -4.05 -0.02 2.66 16 5 N -0.44 -10.69 2.46 -114.81 -0.28 -10.97 16 6 C -0.34 -8.35 8.12 -14.93 -0.12 -8.47 16 7 H 0.09 2.12 5.32 -52.49 -0.28 1.84 16 8 C 0.05 1.14 5.01 -17.47 -0.09 1.05 16 9 N -0.86 -22.51 11.43 55.50 0.63 -21.87 16 10 Si 0.91 19.11 29.59 -169.99 -5.03 14.08 16 11 H -0.28 -5.79 7.11 56.52 0.40 -5.38 16 12 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 13 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 14 C 0.48 11.40 6.44 -10.98 -0.07 11.33 16 15 O -0.60 -15.34 13.18 5.55 0.07 -15.27 16 16 C -0.12 -2.33 1.87 -91.50 -0.17 -2.51 16 17 H 0.09 1.88 7.95 -51.92 -0.41 1.47 16 18 C 0.07 1.32 4.02 -3.75 -0.02 1.31 16 19 N -0.53 -8.65 5.22 -234.30 -1.22 -9.87 16 20 C 0.05 0.75 6.09 -3.74 -0.02 0.73 16 21 C -0.15 -2.17 5.75 -26.47 -0.15 -2.32 16 22 C -0.06 -1.15 2.61 -90.02 -0.23 -1.39 16 23 C -0.16 -2.74 5.43 -26.46 -0.14 -2.88 16 24 C 0.06 0.88 6.09 -3.73 -0.02 0.86 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 29 H 0.06 0.99 8.14 -51.92 -0.42 0.57 16 30 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 31 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.05 1.31 7.36 -51.93 -0.38 0.92 16 33 H 0.10 2.57 5.57 -51.92 -0.29 2.28 16 34 H 0.27 6.67 8.32 -40.82 -0.34 6.33 16 35 H 0.08 1.64 7.11 -51.93 -0.37 1.27 16 36 H 0.08 1.36 7.65 -51.93 -0.40 0.96 16 37 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 42 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.10 2.09 5.47 -51.93 -0.28 1.81 16 44 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 45 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 337.95 15.07 5.09 5.09 Total: -1.00 -27.03 337.95 -9.63 -36.66 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: -7.89 Total: 8.34 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: -1.00 Total: -6.19 kcal Atomic # 7 Polarization: -41.84 SS G_CDS: -0.87 Total: -42.71 kcal Atomic # 8 Polarization: -15.34 SS G_CDS: 0.07 Total: -15.27 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.03 Total: 14.08 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -27.03 -9.63 -36.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182015619.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.319 kcal (2) G-P(sol) polarization free energy of solvation -27.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds