Wall clock time and date at job start Tue Mar 31 2020 02:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.47344 * 2 1 4 4 C 1.52992 * 109.47344 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47114 * 180.02562 * 4 3 2 6 6 C 1.37101 * 120.00554 * 90.00275 * 5 4 3 7 7 H 1.07998 * 120.00039 * 219.89002 * 6 5 4 8 8 C 1.38952 * 119.99757 * 39.88254 * 6 5 4 9 9 N 1.31408 * 119.99958 * 18.28342 * 8 6 5 10 10 Si 1.86798 * 119.99955 * 198.00757 * 8 6 5 11 11 H 1.48494 * 109.47216 * 270.28112 * 10 8 6 12 12 H 1.48506 * 109.47228 * 30.27700 * 10 8 6 13 13 H 1.48493 * 109.47136 * 150.27679 * 10 8 6 14 14 C 1.34780 * 119.99710 * 269.99966 * 5 4 3 15 15 O 1.21290 * 120.00013 * 354.97693 * 14 5 4 16 16 C 1.50703 * 120.00047 * 174.97700 * 14 5 4 17 17 H 1.09008 * 109.57297 * 57.13442 * 16 14 5 18 18 C 1.53135 * 109.57808 * 296.74149 * 16 14 5 19 19 N 1.46911 * 109.36626 * 240.18478 * 18 16 14 20 20 C 1.46942 * 111.05771 * 298.00499 * 19 18 16 21 21 C 1.53123 * 109.35031 * 61.96319 * 20 19 18 22 22 C 1.53382 * 109.57997 * 177.39474 * 16 14 5 23 23 C 1.53391 * 108.59817 * 60.84959 * 22 16 14 24 24 C 1.46947 * 111.05766 * 62.00581 * 19 18 16 25 25 H 1.09004 * 109.47341 * 299.99953 * 1 2 3 26 26 H 1.08998 * 109.47717 * 60.00161 * 1 2 3 27 27 H 1.09004 * 109.47142 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47341 * 240.00047 * 2 1 3 29 29 H 1.09007 * 109.47447 * 119.99853 * 2 1 3 30 30 H 1.09004 * 109.46863 * 59.99754 * 3 2 1 31 31 H 1.08994 * 109.46746 * 300.00087 * 3 2 1 32 32 H 1.09004 * 109.47341 * 60.00047 * 4 3 2 33 33 H 1.09007 * 109.47447 * 299.99853 * 4 3 2 34 34 H 0.96999 * 119.99817 * 174.68833 * 9 8 6 35 35 H 1.09000 * 109.48966 * 0.15096 * 18 16 14 36 36 H 1.08995 * 109.49224 * 120.21702 * 18 16 14 37 37 H 1.08997 * 109.49158 * 302.00381 * 20 19 18 38 38 H 1.08996 * 109.49068 * 181.92883 * 20 19 18 39 39 H 1.08995 * 109.57768 * 240.24161 * 21 20 19 40 40 H 1.09003 * 109.57026 * 119.85836 * 21 20 19 41 41 H 1.09002 * 110.11653 * 299.41653 * 22 16 14 42 42 H 1.09000 * 109.58096 * 178.80976 * 23 22 16 43 43 H 1.09000 * 109.57575 * 299.19697 * 23 22 16 44 44 H 1.09005 * 109.48768 * 58.01023 * 24 19 18 45 45 H 1.09002 * 109.48959 * 178.07862 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 7 4.0582 2.8237 0.0013 6 6 4.2863 3.4697 1.1888 7 1 4.0179 4.5102 1.2978 8 6 4.8627 2.7858 2.2522 9 7 5.5108 1.6631 2.0374 10 14 4.7228 3.4664 3.9862 11 1 5.8715 4.3672 4.2586 12 1 3.4546 4.2278 4.1183 13 1 4.7309 2.3454 4.9600 14 6 4.2833 3.4594 -1.1657 15 8 4.1695 2.8605 -2.2143 16 6 4.6765 4.9142 -1.1677 17 1 5.5803 5.0491 -0.5733 18 6 3.5403 5.7536 -0.5766 19 7 3.0750 6.7197 -1.5809 20 6 4.1491 7.6494 -1.9566 21 6 5.3028 6.8638 -2.5864 22 6 4.9349 5.3748 -2.6077 23 6 3.6429 5.2016 -3.4161 24 6 2.5356 6.0337 -2.7632 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6766 1.9562 -0.8899 32 1 3.9337 0.9285 -0.8891 33 1 3.9329 0.9288 0.8909 34 1 5.9784 1.2259 2.7661 35 1 2.7158 5.1002 -0.2913 36 1 3.9019 6.2880 0.3018 37 1 4.5062 8.1706 -1.0684 38 1 3.7676 8.3744 -2.6755 39 1 6.2078 7.0081 -1.9964 40 1 5.4692 7.2135 -3.6053 41 1 5.7463 4.7945 -3.0471 42 1 3.8028 5.5445 -4.4383 43 1 3.3542 4.1505 -3.4224 44 1 1.7178 5.3788 -2.4622 45 1 2.1674 6.7720 -3.4756 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182015619.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:09:28 Heat of formation + Delta-G solvation = -56.137345 kcal Electronic energy + Delta-G solvation = -24031.462802 eV Core-core repulsion = 20854.505867 eV Total energy + Delta-G solvation = -3176.956935 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.08803 -39.73836 -37.12441 -35.59421 -33.50110 -33.05212 -32.25417 -31.75151 -29.72477 -26.88047 -25.30620 -24.04563 -23.74172 -23.48736 -21.96593 -20.98130 -18.99880 -18.27629 -17.94847 -17.28299 -16.85515 -16.64224 -16.39852 -16.08715 -15.51086 -15.44236 -14.53304 -14.14468 -13.88511 -13.81719 -13.72512 -13.63463 -13.21514 -13.05476 -13.02122 -12.96922 -12.87770 -12.80861 -12.55452 -12.41488 -12.17399 -12.01496 -11.96716 -11.81607 -11.75473 -11.43930 -11.26845 -10.99809 -10.88401 -10.08547 -9.36678 -9.12362 -8.26743 -6.04665 1.41539 1.48434 1.58857 2.05337 2.33012 2.93899 3.06887 3.13778 3.70194 3.82642 4.00913 4.06348 4.16276 4.24659 4.29445 4.31972 4.33197 4.38587 4.43903 4.49609 4.55726 4.69912 4.77622 4.82240 4.86929 4.95074 4.97942 5.00809 5.02796 5.09428 5.16512 5.18211 5.21817 5.28041 5.30459 5.35760 5.42357 5.47273 5.56768 5.61225 6.12091 6.13333 6.23447 6.46927 7.16280 7.64108 8.08334 8.76742 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.013626 B = 0.007484 C = 0.005682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.434265 B = 3740.527287 C = 4926.739850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.116 4.116 3 C -0.111 4.111 4 C 0.116 3.884 5 N -0.450 5.450 6 C -0.351 4.351 7 H 0.104 0.896 8 C 0.003 3.997 9 N -0.899 5.899 10 Si 0.977 3.023 11 H -0.271 1.271 12 H -0.257 1.257 13 H -0.285 1.285 14 C 0.467 3.533 15 O -0.628 6.628 16 C -0.112 4.112 17 H 0.079 0.921 18 C 0.083 3.917 19 N -0.531 5.531 20 C 0.053 3.947 21 C -0.141 4.141 22 C -0.068 4.068 23 C -0.154 4.154 24 C 0.059 3.941 25 H 0.056 0.944 26 H 0.052 0.948 27 H 0.070 0.930 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.037 0.963 32 H 0.028 0.972 33 H 0.086 0.914 34 H 0.270 0.730 35 H 0.057 0.943 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.096 0.904 39 H 0.067 0.933 40 H 0.082 0.918 41 H 0.052 0.948 42 H 0.071 0.929 43 H 0.062 0.938 44 H 0.053 0.947 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.085 7.974 -3.355 10.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.154 4.154 3 C -0.149 4.149 4 C -0.008 4.008 5 N -0.167 5.167 6 C -0.479 4.479 7 H 0.121 0.879 8 C -0.200 4.200 9 N -0.537 5.537 10 Si 0.801 3.199 11 H -0.196 1.196 12 H -0.181 1.181 13 H -0.211 1.211 14 C 0.257 3.743 15 O -0.516 6.516 16 C -0.134 4.134 17 H 0.097 0.903 18 C -0.046 4.046 19 N -0.252 5.252 20 C -0.075 4.075 21 C -0.180 4.180 22 C -0.088 4.088 23 C -0.193 4.193 24 C -0.069 4.069 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.089 0.911 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.056 0.944 32 H 0.046 0.954 33 H 0.104 0.896 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.106 0.894 37 H 0.102 0.898 38 H 0.114 0.886 39 H 0.086 0.914 40 H 0.101 0.899 41 H 0.070 0.930 42 H 0.089 0.911 43 H 0.081 0.919 44 H 0.071 0.929 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -5.513 7.786 -3.482 10.155 hybrid contribution 1.212 -1.001 0.518 1.655 sum -4.301 6.784 -2.964 8.562 Atomic orbital electron populations 1.21702 0.94000 1.02360 1.01819 1.21414 0.97222 0.95220 1.01573 1.21734 0.95309 0.97652 1.00235 1.21323 0.93250 0.85093 1.01141 1.43641 1.55972 1.12069 1.05032 1.19866 1.41500 0.97805 0.88698 0.87898 1.26239 0.93885 0.96130 1.03708 1.69967 1.30004 1.19544 1.34138 0.85166 0.79463 0.77910 0.77385 1.19619 1.18111 1.21055 1.21047 0.79368 0.90384 0.83453 1.90402 1.58961 1.69536 1.32730 1.21661 1.01067 0.92265 0.98447 0.90312 1.21974 0.94892 0.92922 0.94808 1.62638 1.33194 1.17853 1.11474 1.22322 0.89559 0.94499 1.01131 1.22252 0.99860 0.93283 1.02579 1.20873 0.97785 0.96756 0.93340 1.22363 0.95704 1.02084 0.99100 1.22155 0.95967 0.96843 0.91974 0.92538 0.92916 0.91083 0.92614 0.92166 0.92661 0.94411 0.95382 0.89620 0.92019 0.92487 0.89445 0.89754 0.88605 0.91400 0.89937 0.92982 0.91060 0.91900 0.92860 0.88492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.80 9.91 71.98 0.71 -3.09 16 2 C -0.12 -3.93 5.93 30.59 0.18 -3.74 16 3 C -0.11 -4.60 5.54 30.59 0.17 -4.43 16 4 C 0.12 5.75 5.04 86.38 0.44 6.18 16 5 N -0.45 -22.91 2.46 -635.53 -1.56 -24.48 16 6 C -0.35 -17.43 8.12 84.04 0.68 -16.75 16 7 H 0.10 4.77 5.32 -2.91 -0.02 4.75 16 8 C 0.00 0.15 5.01 84.93 0.43 0.57 16 9 N -0.90 -48.18 11.43 21.66 0.25 -47.93 16 10 Si 0.98 38.99 29.59 68.60 2.03 41.02 16 11 H -0.27 -10.50 7.11 99.48 0.71 -9.80 16 12 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 13 H -0.28 -11.42 7.11 99.48 0.71 -10.72 16 14 C 0.47 23.12 6.44 87.66 0.56 23.69 16 15 O -0.63 -33.82 13.18 -3.06 -0.04 -33.86 16 16 C -0.11 -4.51 1.87 -11.37 -0.02 -4.54 16 17 H 0.08 3.34 7.95 -2.38 -0.02 3.32 16 18 C 0.08 2.98 4.02 86.35 0.35 3.33 16 19 N -0.53 -15.97 5.22 -895.19 -4.67 -20.64 16 20 C 0.05 1.27 6.09 86.34 0.53 1.79 16 21 C -0.14 -3.65 5.75 30.77 0.18 -3.48 16 22 C -0.07 -2.39 2.61 -10.40 -0.03 -2.41 16 23 C -0.15 -5.23 5.43 30.77 0.17 -5.06 16 24 C 0.06 1.77 6.09 86.34 0.53 2.30 16 25 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 26 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 28 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 29 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 30 H 0.05 2.31 8.14 -2.38 -0.02 2.29 16 31 H 0.04 1.62 8.14 -2.39 -0.02 1.61 16 32 H 0.03 1.48 7.36 -2.38 -0.02 1.46 16 33 H 0.09 4.54 5.57 -2.38 -0.01 4.53 16 34 H 0.27 13.69 8.32 -92.71 -0.77 12.92 16 35 H 0.06 2.32 7.11 -2.39 -0.02 2.30 16 36 H 0.09 2.94 7.65 -2.39 -0.02 2.92 16 37 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 43 H 0.06 2.66 5.47 -2.39 -0.01 2.65 16 44 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 45 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -60.64 337.95 1.81 -58.83 By element: Atomic # 1 Polarization: 31.76 SS G_CDS: 0.94 Total: 32.70 kcal Atomic # 6 Polarization: -10.50 SS G_CDS: 4.87 Total: -5.64 kcal Atomic # 7 Polarization: -87.06 SS G_CDS: -5.99 Total: -93.05 kcal Atomic # 8 Polarization: -33.82 SS G_CDS: -0.04 Total: -33.86 kcal Atomic # 14 Polarization: 38.99 SS G_CDS: 2.03 Total: 41.02 kcal Total: -60.64 1.81 -58.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182015619.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.688 kcal (2) G-P(sol) polarization free energy of solvation -60.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds