Wall clock time and date at job start Tue Mar 31 2020 02:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.47296 * 2 1 4 4 C 1.52994 * 109.47190 * 180.02562 * 3 2 1 5 5 N 1.46506 * 109.47195 * 180.02562 * 4 3 2 6 6 C 1.37095 * 119.99685 * 269.99746 * 5 4 3 7 7 H 1.08004 * 119.99380 * 140.24833 * 6 5 4 8 8 C 1.38948 * 119.99977 * 320.24868 * 6 5 4 9 9 N 1.31411 * 119.99507 * 161.33568 * 8 6 5 10 10 Si 1.86792 * 120.00444 * 341.33417 * 8 6 5 11 11 H 1.48496 * 109.47203 * 95.70101 * 10 8 6 12 12 H 1.48501 * 109.47277 * 215.70703 * 10 8 6 13 13 H 1.48506 * 109.46868 * 335.70367 * 10 8 6 14 14 C 1.34773 * 119.99842 * 89.99706 * 5 4 3 15 15 O 1.21294 * 120.00222 * 4.95139 * 14 5 4 16 16 C 1.50705 * 119.99862 * 184.94567 * 14 5 4 17 17 H 1.08994 * 109.67843 * 304.20298 * 16 14 5 18 18 C 1.54779 * 109.34333 * 65.69944 * 16 14 5 19 19 N 1.46942 * 109.55548 * 119.89702 * 18 16 14 20 20 C 1.46911 * 111.05369 * 61.54822 * 19 18 16 21 21 C 1.53136 * 109.37071 * 297.99864 * 20 19 18 22 22 C 1.53384 * 108.82751 * 0.02562 * 21 20 19 23 23 C 1.53396 * 108.59572 * 301.03121 * 22 21 20 24 24 C 1.46945 * 110.97062 * 297.50548 * 19 18 16 25 25 H 1.08995 * 109.46496 * 299.99913 * 1 2 3 26 26 H 1.08999 * 109.47159 * 59.99619 * 1 2 3 27 27 H 1.09002 * 109.46985 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46497 * 240.00233 * 2 1 3 29 29 H 1.08999 * 109.47159 * 120.00381 * 2 1 3 30 30 H 1.09005 * 109.46765 * 59.99968 * 3 2 1 31 31 H 1.08999 * 109.47328 * 300.00277 * 3 2 1 32 32 H 1.08995 * 109.47420 * 60.00065 * 4 3 2 33 33 H 1.09004 * 109.46803 * 299.99904 * 4 3 2 34 34 H 0.97002 * 119.99638 * 180.02562 * 9 8 6 35 35 H 1.08999 * 109.72115 * 359.66323 * 18 16 14 36 36 H 1.09004 * 109.07195 * 239.73036 * 18 16 14 37 37 H 1.09008 * 109.48135 * 178.03233 * 20 19 18 38 38 H 1.08999 * 109.50258 * 57.98603 * 20 19 18 39 39 H 1.09000 * 109.58183 * 240.20101 * 21 20 19 40 40 H 1.09004 * 109.68353 * 119.87257 * 21 20 19 41 41 H 1.08996 * 110.11339 * 180.39934 * 22 21 20 42 42 H 1.09003 * 109.57198 * 178.80731 * 23 22 21 43 43 H 1.08995 * 109.57788 * 299.19703 * 23 22 21 44 44 H 1.08989 * 109.49210 * 182.05432 * 24 19 18 45 45 H 1.09006 * 109.48327 * 302.09836 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0584 2.8237 0.0000 6 6 4.2865 3.4706 -1.1871 7 1 4.0201 4.5117 -1.2944 8 6 4.8602 2.7867 -2.2519 9 7 4.7502 3.2605 -3.4727 10 14 5.7878 1.1941 -1.9482 11 1 4.8802 0.0413 -2.1770 12 1 6.9418 1.1081 -2.8789 13 1 6.2790 1.1669 -0.5470 14 6 4.2835 3.4583 1.1674 15 8 4.1683 2.8589 2.2156 16 6 4.6784 4.9127 1.1706 17 1 5.5690 5.0525 0.5580 18 6 3.5045 5.7638 0.6293 19 7 3.0760 6.7216 1.6581 20 6 4.1643 7.6453 2.0051 21 6 5.3372 6.8521 2.5886 22 6 4.9674 5.3637 2.6075 23 6 3.7032 5.1844 3.4576 24 6 2.5754 6.0237 2.8504 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6768 1.9563 -0.8899 32 1 3.9330 0.9288 -0.8908 33 1 3.9337 0.9284 0.8892 34 1 5.1505 2.7830 -4.2161 35 1 2.6695 5.1142 0.3668 36 1 3.8361 6.3057 -0.2565 37 1 3.8091 8.3648 2.7430 38 1 4.4922 8.1741 1.1101 39 1 5.5384 7.1917 3.6046 40 1 6.2236 7.0002 1.9717 41 1 5.7866 4.7792 3.0263 42 1 3.4137 4.1336 3.4644 43 1 3.8980 5.5182 4.4767 44 1 2.2310 6.7547 3.5818 45 1 1.7478 5.3723 2.5697 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182015620.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:09:33 Heat of formation + Delta-G solvation = -33.966925 kcal Electronic energy + Delta-G solvation = -24075.324823 eV Core-core repulsion = 20899.329270 eV Total energy + Delta-G solvation = -3175.995553 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.63410 -38.29166 -35.56541 -34.07589 -31.95217 -31.71213 -30.85951 -30.53694 -28.36826 -24.96203 -23.98843 -22.72564 -22.53430 -22.24678 -20.72534 -19.06218 -17.40197 -16.82880 -16.46762 -15.93830 -15.65426 -15.11072 -14.99448 -14.66906 -14.11833 -13.40464 -13.31127 -12.81394 -12.69309 -12.54490 -12.39039 -12.30459 -11.87462 -11.75542 -11.73743 -11.67632 -11.50217 -11.29395 -11.03514 -10.99433 -10.69429 -10.61646 -10.46622 -10.34291 -10.00779 -9.96575 -9.79112 -9.68416 -9.10306 -8.45991 -7.82131 -7.74501 -6.49075 -4.11681 3.02760 3.19375 3.27483 3.69361 4.10073 4.30622 4.40006 4.90447 4.97182 5.16887 5.29757 5.34680 5.39925 5.50391 5.53372 5.57213 5.62001 5.64718 5.77714 5.81207 5.88158 5.98510 6.06879 6.10410 6.14747 6.16896 6.19912 6.22406 6.26654 6.35749 6.36504 6.48369 6.49170 6.61896 6.63960 6.71623 6.76565 6.86244 6.94996 7.38944 7.44539 7.47238 8.08543 8.24398 8.94084 9.34085 9.68277 10.61134 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.015515 B = 0.007251 C = 0.005854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.252613 B = 3860.398891 C = 4782.063078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C -0.124 4.124 4 C 0.103 3.897 5 N -0.465 5.465 6 C -0.346 4.346 7 H 0.110 0.890 8 C 0.069 3.931 9 N -0.861 5.861 10 Si 0.876 3.124 11 H -0.275 1.275 12 H -0.289 1.289 13 H -0.263 1.263 14 C 0.490 3.510 15 O -0.594 6.594 16 C -0.115 4.115 17 H 0.096 0.904 18 C 0.074 3.926 19 N -0.532 5.532 20 C 0.054 3.946 21 C -0.150 4.150 22 C -0.067 4.067 23 C -0.159 4.159 24 C 0.055 3.945 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.048 0.952 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.274 0.726 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.060 0.940 40 H 0.063 0.937 41 H 0.073 0.927 42 H 0.102 0.898 43 H 0.050 0.950 44 H 0.065 0.935 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.812 2.457 7.598 8.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.162 4.162 3 C -0.163 4.163 4 C -0.020 4.020 5 N -0.185 5.185 6 C -0.473 4.473 7 H 0.128 0.872 8 C -0.139 4.139 9 N -0.496 5.496 10 Si 0.704 3.296 11 H -0.202 1.202 12 H -0.216 1.216 13 H -0.187 1.187 14 C 0.280 3.720 15 O -0.480 6.480 16 C -0.138 4.138 17 H 0.114 0.886 18 C -0.055 4.055 19 N -0.252 5.252 20 C -0.075 4.075 21 C -0.189 4.189 22 C -0.087 4.087 23 C -0.198 4.198 24 C -0.074 4.074 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.091 0.909 42 H 0.120 0.880 43 H 0.069 0.931 44 H 0.084 0.916 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.247 2.446 7.661 8.673 hybrid contribution 1.361 -1.373 0.081 1.935 sum -1.886 1.073 7.742 8.041 Atomic orbital electron populations 1.21738 0.96133 1.00875 1.01758 1.21483 0.95607 0.97514 1.01557 1.21838 0.96042 0.95930 1.02460 1.21595 0.93899 0.85632 1.00895 1.43728 1.57296 1.11613 1.05817 1.19210 1.41821 0.98615 0.87621 0.87239 1.25338 0.95706 0.97996 0.94824 1.69731 1.41211 1.40221 0.98482 0.86947 0.80000 0.83546 0.79135 1.20179 1.21645 1.18750 1.20327 0.79304 0.88990 0.83415 1.90436 1.57354 1.68386 1.31782 1.21955 1.01197 0.93728 0.96927 0.88619 1.22425 0.96218 0.93117 0.93704 1.62628 1.33330 1.18800 1.10439 1.22152 0.90168 0.94913 1.00245 1.22293 0.99371 0.96141 1.01073 1.20877 0.98291 0.94622 0.94875 1.22486 0.95585 1.03983 0.97706 1.22151 0.97166 0.96380 0.91674 0.92935 0.92737 0.93298 0.92305 0.92356 0.92222 0.91156 0.92053 0.91470 0.91532 0.90046 0.90035 0.91310 0.90831 0.92129 0.91831 0.90865 0.88028 0.93144 0.91637 0.91221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.91 37.16 0.37 -1.61 16 2 C -0.12 -1.95 5.93 -26.73 -0.16 -2.11 16 3 C -0.12 -2.36 5.54 -26.74 -0.15 -2.51 16 4 C 0.10 2.25 4.22 -4.04 -0.02 2.23 16 5 N -0.46 -10.83 2.14 -114.81 -0.25 -11.08 16 6 C -0.35 -8.61 8.65 -14.93 -0.13 -8.74 16 7 H 0.11 2.80 5.69 -52.48 -0.30 2.50 16 8 C 0.07 1.77 5.35 -17.47 -0.09 1.67 16 9 N -0.86 -23.21 13.96 55.50 0.77 -22.44 16 10 Si 0.88 20.46 24.87 -169.99 -4.23 16.23 16 11 H -0.27 -6.19 6.74 56.52 0.38 -5.81 16 12 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 13 H -0.26 -6.33 7.11 56.52 0.40 -5.93 16 14 C 0.49 10.99 6.44 -10.98 -0.07 10.92 16 15 O -0.59 -14.12 13.14 5.55 0.07 -14.05 16 16 C -0.12 -2.23 1.94 -90.65 -0.18 -2.41 16 17 H 0.10 1.92 7.91 -51.93 -0.41 1.51 16 18 C 0.07 1.35 4.09 -2.86 -0.01 1.34 16 19 N -0.53 -8.55 5.22 -233.21 -1.22 -9.76 16 20 C 0.05 0.74 6.10 -3.75 -0.02 0.72 16 21 C -0.15 -2.10 5.74 -26.46 -0.15 -2.25 16 22 C -0.07 -1.14 2.57 -90.04 -0.23 -1.38 16 23 C -0.16 -2.63 5.44 -26.46 -0.14 -2.78 16 24 C 0.05 0.85 6.10 -3.73 -0.02 0.83 16 25 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 32 H 0.06 1.38 3.29 -51.93 -0.17 1.21 16 33 H 0.07 1.48 7.36 -51.93 -0.38 1.10 16 34 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 35 H 0.08 1.64 7.36 -51.93 -0.38 1.26 16 36 H 0.08 1.50 7.68 -51.93 -0.40 1.10 16 37 H 0.07 0.84 8.14 -51.92 -0.42 0.42 16 38 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 42 H 0.10 1.97 5.44 -51.93 -0.28 1.69 16 43 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.07 0.89 8.14 -51.94 -0.42 0.46 16 45 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 333.48 15.07 5.03 5.03 Total: -1.00 -27.05 333.48 -8.65 -35.70 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -7.82 Total: 6.45 kcal Atomic # 6 Polarization: -5.07 SS G_CDS: -1.01 Total: -6.08 kcal Atomic # 7 Polarization: -42.59 SS G_CDS: -0.69 Total: -43.28 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: 0.07 Total: -14.05 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -4.23 Total: 16.23 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -27.05 -8.65 -35.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182015620.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.734 kcal (2) G-P(sol) polarization free energy of solvation -27.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds