Wall clock time and date at job start Tue Mar 31 2020 02:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.47296 * 2 1 4 4 C 1.52994 * 109.47190 * 180.02562 * 3 2 1 5 5 N 1.46506 * 109.47195 * 180.02562 * 4 3 2 6 6 C 1.37095 * 119.99685 * 269.99746 * 5 4 3 7 7 H 1.08004 * 119.99380 * 140.24833 * 6 5 4 8 8 C 1.38948 * 119.99977 * 320.24868 * 6 5 4 9 9 N 1.31411 * 119.99507 * 161.33568 * 8 6 5 10 10 Si 1.86792 * 120.00444 * 341.33417 * 8 6 5 11 11 H 1.48496 * 109.47203 * 95.70101 * 10 8 6 12 12 H 1.48501 * 109.47277 * 215.70703 * 10 8 6 13 13 H 1.48506 * 109.46868 * 335.70367 * 10 8 6 14 14 C 1.34773 * 119.99842 * 89.99706 * 5 4 3 15 15 O 1.21294 * 120.00222 * 4.95139 * 14 5 4 16 16 C 1.50705 * 119.99862 * 184.94567 * 14 5 4 17 17 H 1.08994 * 109.67843 * 304.20298 * 16 14 5 18 18 C 1.54779 * 109.34333 * 65.69944 * 16 14 5 19 19 N 1.46942 * 109.55548 * 119.89702 * 18 16 14 20 20 C 1.46911 * 111.05369 * 61.54822 * 19 18 16 21 21 C 1.53136 * 109.37071 * 297.99864 * 20 19 18 22 22 C 1.53384 * 108.82751 * 0.02562 * 21 20 19 23 23 C 1.53396 * 108.59572 * 301.03121 * 22 21 20 24 24 C 1.46945 * 110.97062 * 297.50548 * 19 18 16 25 25 H 1.08995 * 109.46496 * 299.99913 * 1 2 3 26 26 H 1.08999 * 109.47159 * 59.99619 * 1 2 3 27 27 H 1.09002 * 109.46985 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46497 * 240.00233 * 2 1 3 29 29 H 1.08999 * 109.47159 * 120.00381 * 2 1 3 30 30 H 1.09005 * 109.46765 * 59.99968 * 3 2 1 31 31 H 1.08999 * 109.47328 * 300.00277 * 3 2 1 32 32 H 1.08995 * 109.47420 * 60.00065 * 4 3 2 33 33 H 1.09004 * 109.46803 * 299.99904 * 4 3 2 34 34 H 0.97002 * 119.99638 * 180.02562 * 9 8 6 35 35 H 1.08999 * 109.72115 * 359.66323 * 18 16 14 36 36 H 1.09004 * 109.07195 * 239.73036 * 18 16 14 37 37 H 1.09008 * 109.48135 * 178.03233 * 20 19 18 38 38 H 1.08999 * 109.50258 * 57.98603 * 20 19 18 39 39 H 1.09000 * 109.58183 * 240.20101 * 21 20 19 40 40 H 1.09004 * 109.68353 * 119.87257 * 21 20 19 41 41 H 1.08996 * 110.11339 * 180.39934 * 22 21 20 42 42 H 1.09003 * 109.57198 * 178.80731 * 23 22 21 43 43 H 1.08995 * 109.57788 * 299.19703 * 23 22 21 44 44 H 1.08989 * 109.49210 * 182.05432 * 24 19 18 45 45 H 1.09006 * 109.48327 * 302.09836 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0584 2.8237 0.0000 6 6 4.2865 3.4706 -1.1871 7 1 4.0201 4.5117 -1.2944 8 6 4.8602 2.7867 -2.2519 9 7 4.7502 3.2605 -3.4727 10 14 5.7878 1.1941 -1.9482 11 1 4.8802 0.0413 -2.1770 12 1 6.9418 1.1081 -2.8789 13 1 6.2790 1.1669 -0.5470 14 6 4.2835 3.4583 1.1674 15 8 4.1683 2.8589 2.2156 16 6 4.6784 4.9127 1.1706 17 1 5.5690 5.0525 0.5580 18 6 3.5045 5.7638 0.6293 19 7 3.0760 6.7216 1.6581 20 6 4.1643 7.6453 2.0051 21 6 5.3372 6.8521 2.5886 22 6 4.9674 5.3637 2.6075 23 6 3.7032 5.1844 3.4576 24 6 2.5754 6.0237 2.8504 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6768 1.9563 -0.8899 32 1 3.9330 0.9288 -0.8908 33 1 3.9337 0.9284 0.8892 34 1 5.1505 2.7830 -4.2161 35 1 2.6695 5.1142 0.3668 36 1 3.8361 6.3057 -0.2565 37 1 3.8091 8.3648 2.7430 38 1 4.4922 8.1741 1.1101 39 1 5.5384 7.1917 3.6046 40 1 6.2236 7.0002 1.9717 41 1 5.7866 4.7792 3.0263 42 1 3.4137 4.1336 3.4644 43 1 3.8980 5.5182 4.4767 44 1 2.2310 6.7547 3.5818 45 1 1.7478 5.3723 2.5697 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182015620.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:09:32 Heat of formation + Delta-G solvation = -49.777559 kcal Electronic energy + Delta-G solvation = -24076.010423 eV Core-core repulsion = 20899.329270 eV Total energy + Delta-G solvation = -3176.681154 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.11053 -39.95937 -37.29026 -35.65867 -33.86650 -33.09946 -32.30047 -31.75426 -29.86288 -26.89602 -25.46238 -24.17032 -23.75547 -23.64759 -22.14530 -20.89386 -19.07418 -18.36526 -18.07772 -17.46846 -17.12021 -16.66094 -16.59331 -16.18630 -15.73382 -15.13216 -14.73507 -14.56058 -14.18326 -13.91387 -13.86570 -13.70595 -13.34640 -13.23290 -13.05259 -13.03448 -12.93169 -12.88240 -12.72284 -12.39880 -12.16764 -12.10565 -11.92730 -11.85053 -11.77295 -11.48680 -11.28016 -11.01823 -10.96671 -10.18580 -9.68602 -9.13502 -8.49906 -6.12833 1.14389 1.27428 1.37136 1.87536 2.15613 2.58212 2.96456 3.10647 3.68545 3.77135 3.90643 3.97402 4.02181 4.16709 4.21379 4.26133 4.31634 4.32393 4.37438 4.42463 4.47967 4.55310 4.62012 4.73188 4.77446 4.86086 4.89988 4.94919 5.00680 5.01822 5.07388 5.16390 5.19866 5.21932 5.26476 5.28399 5.32076 5.39759 5.49387 5.57357 6.06548 6.16304 6.23168 6.29929 6.96988 7.43157 7.80109 8.63550 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.015515 B = 0.007251 C = 0.005854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.252613 B = 3860.398891 C = 4782.063078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.121 4.121 3 C -0.113 4.113 4 C 0.097 3.903 5 N -0.477 5.477 6 C -0.337 4.337 7 H 0.097 0.903 8 C 0.034 3.966 9 N -0.895 5.895 10 Si 0.920 3.080 11 H -0.261 1.261 12 H -0.286 1.286 13 H -0.276 1.276 14 C 0.485 3.515 15 O -0.608 6.608 16 C -0.114 4.114 17 H 0.084 0.916 18 C 0.087 3.913 19 N -0.533 5.533 20 C 0.052 3.948 21 C -0.141 4.141 22 C -0.069 4.069 23 C -0.154 4.154 24 C 0.057 3.943 25 H 0.055 0.945 26 H 0.052 0.948 27 H 0.071 0.929 28 H 0.059 0.941 29 H 0.066 0.934 30 H 0.051 0.949 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.062 0.938 34 H 0.278 0.722 35 H 0.055 0.945 36 H 0.077 0.923 37 H 0.096 0.904 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.067 0.933 41 H 0.059 0.941 42 H 0.068 0.932 43 H 0.073 0.927 44 H 0.096 0.904 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.125 3.028 8.931 9.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.159 4.159 3 C -0.152 4.152 4 C -0.025 4.025 5 N -0.197 5.197 6 C -0.464 4.464 7 H 0.115 0.885 8 C -0.171 4.171 9 N -0.532 5.532 10 Si 0.747 3.253 11 H -0.187 1.187 12 H -0.213 1.213 13 H -0.201 1.201 14 C 0.276 3.724 15 O -0.494 6.494 16 C -0.137 4.137 17 H 0.103 0.897 18 C -0.042 4.042 19 N -0.253 5.253 20 C -0.076 4.076 21 C -0.180 4.180 22 C -0.089 4.089 23 C -0.192 4.192 24 C -0.071 4.071 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.090 0.910 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.096 0.904 37 H 0.114 0.886 38 H 0.097 0.903 39 H 0.103 0.897 40 H 0.086 0.914 41 H 0.078 0.922 42 H 0.087 0.913 43 H 0.092 0.908 44 H 0.114 0.886 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.568 3.013 9.000 10.139 hybrid contribution 1.448 -1.525 -0.257 2.118 sum -2.120 1.489 8.742 9.118 Atomic orbital electron populations 1.21706 0.94045 1.02455 1.01870 1.21485 0.97441 0.94958 1.02015 1.21730 0.94021 0.98184 1.01269 1.21699 0.95743 0.84854 1.00239 1.43871 1.57957 1.12214 1.05638 1.19145 1.41008 0.98274 0.88019 0.88512 1.25772 0.96366 1.00255 0.94671 1.69784 1.42629 1.41687 0.99104 0.86243 0.79330 0.81690 0.78056 1.18658 1.21282 1.20134 1.20903 0.78462 0.90201 0.82858 1.90430 1.57749 1.69122 1.32099 1.21995 1.01015 0.91898 0.98812 0.89742 1.22170 0.94638 0.92942 0.94496 1.62633 1.34279 1.18129 1.10283 1.22308 0.89305 0.94610 1.01377 1.22249 0.99582 0.93429 1.02731 1.20904 0.98193 0.96793 0.92971 1.22388 0.95590 1.02242 0.99024 1.22180 0.96249 0.96789 0.91892 0.92637 0.92873 0.90977 0.92173 0.91561 0.92987 0.92624 0.92664 0.91907 0.91198 0.92646 0.90444 0.88567 0.90254 0.89697 0.91446 0.92240 0.91337 0.90793 0.88565 0.92738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.60 9.91 71.98 0.71 -2.88 16 2 C -0.12 -3.70 5.93 30.60 0.18 -3.52 16 3 C -0.11 -4.36 5.54 30.59 0.17 -4.19 16 4 C 0.10 4.30 4.22 86.38 0.36 4.67 16 5 N -0.48 -22.74 2.14 -635.53 -1.36 -24.10 16 6 C -0.34 -17.22 8.65 84.04 0.73 -16.49 16 7 H 0.10 5.13 5.69 -2.91 -0.02 5.11 16 8 C 0.03 1.75 5.35 84.93 0.45 2.21 16 9 N -0.89 -48.93 13.96 21.66 0.30 -48.63 16 10 Si 0.92 42.39 24.87 68.60 1.71 44.09 16 11 H -0.26 -11.32 6.74 99.48 0.67 -10.65 16 12 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 13 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 14 C 0.48 22.25 6.44 87.66 0.56 22.81 16 15 O -0.61 -29.44 13.14 -3.07 -0.04 -29.48 16 16 C -0.11 -4.47 1.94 -10.81 -0.02 -4.49 16 17 H 0.08 3.47 7.91 -2.39 -0.02 3.45 16 18 C 0.09 3.20 4.09 86.90 0.36 3.55 16 19 N -0.53 -16.25 5.22 -891.73 -4.65 -20.90 16 20 C 0.05 1.27 6.10 86.35 0.53 1.80 16 21 C -0.14 -3.55 5.74 30.77 0.18 -3.38 16 22 C -0.07 -2.28 2.57 -10.42 -0.03 -2.31 16 23 C -0.15 -4.87 5.44 30.77 0.17 -4.71 16 24 C 0.06 1.67 6.10 86.34 0.53 2.19 16 25 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 29 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.05 2.04 8.14 -2.38 -0.02 2.03 16 31 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.06 2.50 3.29 -2.39 -0.01 2.49 16 33 H 0.06 2.80 7.36 -2.38 -0.02 2.78 16 34 H 0.28 14.27 8.31 -92.71 -0.77 13.50 16 35 H 0.05 2.31 7.36 -2.39 -0.02 2.29 16 36 H 0.08 2.88 7.68 -2.39 -0.02 2.87 16 37 H 0.10 1.90 8.14 -2.38 -0.02 1.88 16 38 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 42 H 0.07 2.66 5.44 -2.39 -0.01 2.65 16 43 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 44 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 45 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 Total: -1.00 -58.48 333.48 1.75 -56.73 By element: Atomic # 1 Polarization: 26.09 SS G_CDS: 0.91 Total: 27.01 kcal Atomic # 6 Polarization: -9.60 SS G_CDS: 4.88 Total: -4.72 kcal Atomic # 7 Polarization: -87.91 SS G_CDS: -5.71 Total: -93.62 kcal Atomic # 8 Polarization: -29.44 SS G_CDS: -0.04 Total: -29.48 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 1.71 Total: 44.09 kcal Total: -58.48 1.75 -56.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182015620.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.951 kcal (2) G-P(sol) polarization free energy of solvation -58.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds