Wall clock time and date at job start Tue Mar 31 2020 02:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33126 * 1 3 3 C 1.50702 * 119.99846 * 2 1 4 4 N 1.46897 * 109.47180 * 95.59376 * 3 2 1 5 5 C 1.47897 * 111.00129 * 170.00126 * 4 3 2 6 6 C 1.53991 * 107.06043 * 145.84501 * 5 4 3 7 7 C 1.54597 * 105.13717 * 358.77215 * 6 5 4 8 8 C 1.48534 * 110.99965 * 287.39544 * 4 3 2 9 9 C 1.46946 * 120.00263 * 180.02562 * 2 1 3 10 10 O 1.21665 * 120.00118 * 255.62867 * 9 2 1 11 11 N 1.34781 * 120.00151 * 75.62175 * 9 2 1 12 12 C 1.36816 * 119.99639 * 5.16765 * 11 9 2 13 13 H 1.07992 * 120.00118 * 319.55489 * 12 11 9 14 14 C 1.39077 * 119.99856 * 139.56576 * 12 11 9 15 15 N 1.31352 * 119.99813 * 334.30821 * 14 12 11 16 16 Si 1.86793 * 120.00366 * 154.32121 * 14 12 11 17 17 H 1.48499 * 109.47675 * 179.97438 * 16 14 12 18 18 H 1.48507 * 109.46943 * 299.99332 * 16 14 12 19 19 H 1.48501 * 109.47435 * 59.99035 * 16 14 12 20 20 C 1.46501 * 119.99737 * 185.16215 * 11 9 2 21 21 C 1.53001 * 109.47327 * 84.05565 * 20 11 9 22 22 C 1.52994 * 109.47148 * 179.97438 * 21 20 11 23 23 C 1.53000 * 109.46716 * 179.97438 * 22 21 20 24 24 H 1.08001 * 119.99871 * 0.02562 * 1 2 3 25 25 H 1.07997 * 119.99728 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47171 * 335.58882 * 3 2 1 27 27 H 1.08999 * 109.46959 * 215.59340 * 3 2 1 28 28 H 1.08999 * 110.08547 * 26.39454 * 5 4 3 29 29 H 1.09001 * 109.91301 * 265.19730 * 5 4 3 30 30 H 1.09002 * 110.31057 * 117.69014 * 6 5 4 31 31 H 1.09007 * 110.30533 * 239.75797 * 6 5 4 32 32 H 1.08997 * 110.72046 * 96.40848 * 7 6 5 33 33 H 1.09009 * 110.72344 * 219.68586 * 7 6 5 34 34 H 1.09000 * 110.66482 * 318.88384 * 8 4 3 35 35 H 1.09001 * 110.66794 * 81.84045 * 8 4 3 36 36 H 0.97004 * 119.99681 * 354.29489 * 15 14 12 37 37 H 1.08994 * 109.47583 * 324.04967 * 20 11 9 38 38 H 1.09005 * 109.46914 * 204.04898 * 20 11 9 39 39 H 1.09005 * 109.46579 * 299.99538 * 21 20 11 40 40 H 1.08994 * 109.47278 * 59.99215 * 21 20 11 41 41 H 1.08994 * 109.47569 * 59.99520 * 22 21 20 42 42 H 1.09005 * 109.47107 * 299.99342 * 22 21 20 43 43 H 1.09002 * 109.47217 * 59.99984 * 23 22 21 44 44 H 1.08993 * 109.47339 * 299.99363 * 23 22 21 45 45 H 1.09005 * 109.46949 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3313 0.0000 0.0000 3 6 2.0847 1.3051 0.0000 4 7 2.4465 1.6617 1.3784 5 6 3.3863 2.8034 1.4012 6 6 3.0596 3.6324 2.6571 7 6 1.8643 2.9089 3.3187 8 6 1.2532 2.1041 2.1443 9 6 2.0660 -1.2726 -0.0006 10 8 2.5967 -1.6691 1.0199 11 7 2.1520 -2.0006 -1.1316 12 6 1.6473 -1.5064 -2.3032 13 1 0.7076 -0.9741 -2.3044 14 6 2.3442 -1.6897 -3.4927 15 7 3.6468 -1.8577 -3.4715 16 14 1.4281 -1.6965 -5.1206 17 1 2.3919 -1.9078 -6.2303 18 1 0.4256 -2.7921 -5.1198 19 1 0.7382 -0.3946 -5.3058 20 6 2.7861 -3.3211 -1.1062 21 6 1.7647 -4.3688 -0.6591 22 6 2.4267 -5.7479 -0.6332 23 6 1.4054 -6.7954 -0.1855 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5399 -0.9353 -0.0004 26 1 1.4560 2.0877 -0.4247 27 1 2.9901 1.2020 -0.5981 28 1 3.2548 3.4145 0.5083 29 1 4.4122 2.4388 1.4535 30 1 3.9143 3.6474 3.3335 31 1 2.7812 4.6486 2.3777 32 1 2.2073 2.2398 4.1078 33 1 1.1449 3.6294 3.7082 34 1 0.6155 2.7395 1.5298 35 1 0.6945 1.2452 2.5161 36 1 4.1333 -1.7717 -2.6367 37 1 3.6233 -3.3089 -0.4084 38 1 3.1482 -3.5694 -2.1039 39 1 1.4025 -4.1205 0.3386 40 1 0.9275 -4.3810 -1.3569 41 1 3.2641 -5.7359 0.0643 42 1 2.7885 -5.9960 -1.6311 43 1 0.5677 -6.8075 -0.8829 44 1 1.0439 -6.5472 0.8124 45 1 1.8769 -7.7781 -0.1675 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001183044337.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:09:17 Heat of formation + Delta-G solvation = -23.786595 kcal Electronic energy + Delta-G solvation = -22908.600242 eV Core-core repulsion = 19733.046141 eV Total energy + Delta-G solvation = -3175.554101 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.14704 -38.32272 -35.48959 -34.12780 -33.72681 -31.30648 -30.60879 -28.72119 -28.30328 -25.22764 -24.49449 -23.54745 -21.11686 -20.93227 -20.66029 -20.23158 -18.89067 -16.80712 -15.89512 -15.79038 -15.18346 -14.91580 -14.64255 -14.35437 -13.95040 -13.79921 -13.54458 -13.47744 -12.84843 -12.61062 -12.32530 -12.18493 -12.10437 -11.93415 -11.73389 -11.33295 -11.15911 -11.02335 -10.97973 -10.66931 -10.66190 -10.60968 -10.55537 -10.48280 -10.25745 -9.99011 -9.71626 -9.00962 -8.68505 -8.41387 -8.02247 -7.67824 -6.59204 -4.03914 2.58529 3.26780 3.32624 3.50776 3.87593 4.23969 4.35632 4.68524 4.79904 4.82195 5.02552 5.04273 5.38049 5.42306 5.43659 5.51897 5.59854 5.60018 5.67981 5.78477 5.84150 5.87912 5.94133 5.99323 6.06243 6.12646 6.19560 6.20602 6.26542 6.28052 6.31186 6.39109 6.51846 6.60337 6.67834 6.91250 7.01945 7.09366 7.14282 7.24006 7.38082 7.74342 8.05444 8.45562 9.04354 9.52455 9.87913 10.62752 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.014727 B = 0.005501 C = 0.004468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.839692 B = 5088.531095 C = 6265.969300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.081 4.081 3 C 0.099 3.901 4 N -0.503 5.503 5 C 0.035 3.965 6 C -0.129 4.129 7 C -0.123 4.123 8 C 0.036 3.964 9 C 0.510 3.490 10 O -0.587 6.587 11 N -0.446 5.446 12 C -0.427 4.427 13 H 0.081 0.919 14 C 0.016 3.984 15 N -0.868 5.868 16 Si 1.067 2.933 17 H -0.280 1.280 18 H -0.284 1.284 19 H -0.284 1.284 20 C 0.111 3.889 21 C -0.125 4.125 22 C -0.120 4.120 23 C -0.148 4.148 24 H 0.095 0.905 25 H 0.097 0.903 26 H 0.042 0.958 27 H 0.082 0.918 28 H 0.041 0.959 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.040 0.960 35 H 0.082 0.918 36 H 0.277 0.723 37 H 0.055 0.945 38 H 0.084 0.916 39 H 0.054 0.946 40 H 0.061 0.939 41 H 0.057 0.943 42 H 0.060 0.940 43 H 0.051 0.949 44 H 0.050 0.950 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.420 4.827 5.865 8.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.085 4.085 3 C -0.029 4.029 4 N -0.227 5.227 5 C -0.093 4.093 6 C -0.167 4.167 7 C -0.161 4.161 8 C -0.092 4.092 9 C 0.299 3.701 10 O -0.472 6.472 11 N -0.165 5.165 12 C -0.555 4.555 13 H 0.099 0.901 14 C -0.193 4.193 15 N -0.501 5.501 16 Si 0.893 3.107 17 H -0.206 1.206 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.013 4.013 21 C -0.163 4.163 22 C -0.159 4.159 23 C -0.205 4.205 24 H 0.114 0.886 25 H 0.116 0.884 26 H 0.060 0.940 27 H 0.101 0.899 28 H 0.060 0.940 29 H 0.096 0.904 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.058 0.942 35 H 0.100 0.900 36 H 0.088 0.912 37 H 0.074 0.926 38 H 0.102 0.898 39 H 0.073 0.927 40 H 0.080 0.920 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.070 0.930 44 H 0.069 0.931 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -3.671 3.922 4.920 7.284 hybrid contribution -0.668 0.976 1.026 1.566 sum -4.339 4.899 5.946 8.841 Atomic orbital electron populations 1.23962 0.94423 1.01214 1.01918 1.21189 0.94713 0.94491 0.98073 1.21043 0.99544 0.93067 0.89234 1.64740 1.11057 1.34125 1.12787 1.22850 0.98291 0.91309 0.96893 1.22381 0.98821 0.98421 0.97092 1.22464 0.96971 0.98618 0.98015 1.23246 0.92931 0.98360 0.94642 1.18481 0.82743 0.84178 0.84679 1.90665 1.49884 1.72626 1.33984 1.43463 1.52582 1.12881 1.07609 1.20162 1.07380 1.42167 0.85786 0.90147 1.26321 0.95482 0.94954 1.02556 1.70688 1.06702 1.41753 1.30965 0.83535 0.75237 0.77061 0.74831 1.20552 1.21012 1.21018 1.21374 0.94860 0.83181 1.01883 1.21853 0.99420 0.93872 1.01192 1.21445 0.98322 0.94902 1.01188 1.21748 0.99347 0.98316 1.01102 0.88646 0.88447 0.93984 0.89930 0.94014 0.90443 0.91198 0.91834 0.90743 0.91430 0.94201 0.89970 0.91186 0.92616 0.89795 0.92694 0.92045 0.92372 0.92153 0.92961 0.93062 0.93303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.27 12.65 28.95 0.37 -2.91 16 2 C -0.08 -1.74 3.76 -102.88 -0.39 -2.12 16 3 C 0.10 1.88 4.88 -4.98 -0.02 1.86 16 4 N -0.50 -8.84 5.23 -231.90 -1.21 -10.05 16 5 C 0.03 0.50 6.65 -2.76 -0.02 0.48 16 6 C -0.13 -1.50 6.93 -25.38 -0.18 -1.67 16 7 C -0.12 -1.48 7.06 -24.87 -0.18 -1.65 16 8 C 0.04 0.53 5.81 -1.90 -0.01 0.52 16 9 C 0.51 12.85 6.97 -12.73 -0.09 12.76 16 10 O -0.59 -16.23 16.76 5.22 0.09 -16.15 16 11 N -0.45 -11.29 2.25 -116.21 -0.26 -11.55 16 12 C -0.43 -10.94 8.47 -15.02 -0.13 -11.07 16 13 H 0.08 2.03 6.74 -52.49 -0.35 1.68 16 14 C 0.02 0.41 4.74 -17.45 -0.08 0.33 16 15 N -0.87 -23.80 12.37 55.50 0.69 -23.12 16 16 Si 1.07 22.69 29.99 -169.99 -5.10 17.59 16 17 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 18 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 19 H -0.28 -5.77 7.11 56.52 0.40 -5.36 16 20 C 0.11 2.63 4.46 -4.04 -0.02 2.61 16 21 C -0.12 -2.55 5.49 -26.73 -0.15 -2.70 16 22 C -0.12 -2.03 5.93 -26.73 -0.16 -2.19 16 23 C -0.15 -2.10 9.91 37.16 0.37 -1.73 16 24 H 0.10 1.48 8.02 -52.49 -0.42 1.06 16 25 H 0.10 1.84 8.05 -52.49 -0.42 1.42 16 26 H 0.04 0.71 7.69 -51.93 -0.40 0.31 16 27 H 0.08 1.72 8.08 -51.93 -0.42 1.30 16 28 H 0.04 0.57 7.78 -51.93 -0.40 0.17 16 29 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.07 0.67 8.14 -51.92 -0.42 0.24 16 34 H 0.04 0.54 7.81 -51.93 -0.41 0.13 16 35 H 0.08 1.30 8.11 -51.93 -0.42 0.87 16 36 H 0.28 7.87 7.45 -40.82 -0.30 7.56 16 37 H 0.06 1.37 7.54 -51.93 -0.39 0.98 16 38 H 0.08 2.09 5.95 -51.93 -0.31 1.78 16 39 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 42 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 362.56 15.07 5.46 5.46 Total: -1.00 -29.82 362.56 -9.13 -38.95 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -8.12 Total: 6.35 kcal Atomic # 6 Polarization: -6.81 SS G_CDS: -0.68 Total: -7.49 kcal Atomic # 7 Polarization: -43.93 SS G_CDS: -0.79 Total: -44.72 kcal Atomic # 8 Polarization: -16.23 SS G_CDS: 0.09 Total: -16.15 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.10 Total: 17.59 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -29.82 -9.13 -38.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183044337.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.164 kcal (2) G-P(sol) polarization free energy of solvation -29.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds