Wall clock time and date at job start Tue Mar 31 2020 02:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33126 * 1 3 3 C 1.50702 * 119.99846 * 2 1 4 4 N 1.46897 * 109.47180 * 95.59376 * 3 2 1 5 5 C 1.47897 * 111.00129 * 170.00126 * 4 3 2 6 6 C 1.53991 * 107.06043 * 145.84501 * 5 4 3 7 7 C 1.54597 * 105.13717 * 358.77215 * 6 5 4 8 8 C 1.48534 * 110.99965 * 287.39544 * 4 3 2 9 9 C 1.46946 * 120.00263 * 180.02562 * 2 1 3 10 10 O 1.21665 * 120.00118 * 255.62867 * 9 2 1 11 11 N 1.34781 * 120.00151 * 75.62175 * 9 2 1 12 12 C 1.36816 * 119.99639 * 5.16765 * 11 9 2 13 13 H 1.07992 * 120.00118 * 319.55489 * 12 11 9 14 14 C 1.39077 * 119.99856 * 139.56576 * 12 11 9 15 15 N 1.31352 * 119.99813 * 334.30821 * 14 12 11 16 16 Si 1.86793 * 120.00366 * 154.32121 * 14 12 11 17 17 H 1.48499 * 109.47675 * 179.97438 * 16 14 12 18 18 H 1.48507 * 109.46943 * 299.99332 * 16 14 12 19 19 H 1.48501 * 109.47435 * 59.99035 * 16 14 12 20 20 C 1.46501 * 119.99737 * 185.16215 * 11 9 2 21 21 C 1.53001 * 109.47327 * 84.05565 * 20 11 9 22 22 C 1.52994 * 109.47148 * 179.97438 * 21 20 11 23 23 C 1.53000 * 109.46716 * 179.97438 * 22 21 20 24 24 H 1.08001 * 119.99871 * 0.02562 * 1 2 3 25 25 H 1.07997 * 119.99728 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47171 * 335.58882 * 3 2 1 27 27 H 1.08999 * 109.46959 * 215.59340 * 3 2 1 28 28 H 1.08999 * 110.08547 * 26.39454 * 5 4 3 29 29 H 1.09001 * 109.91301 * 265.19730 * 5 4 3 30 30 H 1.09002 * 110.31057 * 117.69014 * 6 5 4 31 31 H 1.09007 * 110.30533 * 239.75797 * 6 5 4 32 32 H 1.08997 * 110.72046 * 96.40848 * 7 6 5 33 33 H 1.09009 * 110.72344 * 219.68586 * 7 6 5 34 34 H 1.09000 * 110.66482 * 318.88384 * 8 4 3 35 35 H 1.09001 * 110.66794 * 81.84045 * 8 4 3 36 36 H 0.97004 * 119.99681 * 354.29489 * 15 14 12 37 37 H 1.08994 * 109.47583 * 324.04967 * 20 11 9 38 38 H 1.09005 * 109.46914 * 204.04898 * 20 11 9 39 39 H 1.09005 * 109.46579 * 299.99538 * 21 20 11 40 40 H 1.08994 * 109.47278 * 59.99215 * 21 20 11 41 41 H 1.08994 * 109.47569 * 59.99520 * 22 21 20 42 42 H 1.09005 * 109.47107 * 299.99342 * 22 21 20 43 43 H 1.09002 * 109.47217 * 59.99984 * 23 22 21 44 44 H 1.08993 * 109.47339 * 299.99363 * 23 22 21 45 45 H 1.09005 * 109.46949 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3313 0.0000 0.0000 3 6 2.0847 1.3051 0.0000 4 7 2.4465 1.6617 1.3784 5 6 3.3863 2.8034 1.4012 6 6 3.0596 3.6324 2.6571 7 6 1.8643 2.9089 3.3187 8 6 1.2532 2.1041 2.1443 9 6 2.0660 -1.2726 -0.0006 10 8 2.5967 -1.6691 1.0199 11 7 2.1520 -2.0006 -1.1316 12 6 1.6473 -1.5064 -2.3032 13 1 0.7076 -0.9741 -2.3044 14 6 2.3442 -1.6897 -3.4927 15 7 3.6468 -1.8577 -3.4715 16 14 1.4281 -1.6965 -5.1206 17 1 2.3919 -1.9078 -6.2303 18 1 0.4256 -2.7921 -5.1198 19 1 0.7382 -0.3946 -5.3058 20 6 2.7861 -3.3211 -1.1062 21 6 1.7647 -4.3688 -0.6591 22 6 2.4267 -5.7479 -0.6332 23 6 1.4054 -6.7954 -0.1855 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5399 -0.9353 -0.0004 26 1 1.4560 2.0877 -0.4247 27 1 2.9901 1.2020 -0.5981 28 1 3.2548 3.4145 0.5083 29 1 4.4122 2.4388 1.4535 30 1 3.9143 3.6474 3.3335 31 1 2.7812 4.6486 2.3777 32 1 2.2073 2.2398 4.1078 33 1 1.1449 3.6294 3.7082 34 1 0.6155 2.7395 1.5298 35 1 0.6945 1.2452 2.5161 36 1 4.1333 -1.7717 -2.6367 37 1 3.6233 -3.3089 -0.4084 38 1 3.1482 -3.5694 -2.1039 39 1 1.4025 -4.1205 0.3386 40 1 0.9275 -4.3810 -1.3569 41 1 3.2641 -5.7359 0.0643 42 1 2.7885 -5.9960 -1.6311 43 1 0.5677 -6.8075 -0.8829 44 1 1.0439 -6.5472 0.8124 45 1 1.8769 -7.7781 -0.1675 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001183044337.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:09:17 Heat of formation + Delta-G solvation = -41.086160 kcal Electronic energy + Delta-G solvation = -22909.350407 eV Core-core repulsion = 19733.046141 eV Total energy + Delta-G solvation = -3176.304266 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.88636 -39.72234 -37.33155 -35.83973 -35.21419 -33.24787 -31.92109 -30.03984 -29.69399 -26.63294 -26.44451 -25.21176 -22.68622 -22.12877 -21.91127 -21.71514 -20.81051 -18.57773 -17.55767 -17.04874 -16.77865 -16.58841 -16.17756 -16.07560 -15.57611 -15.38339 -14.96963 -14.80114 -14.29235 -14.05334 -13.89799 -13.72558 -13.53592 -13.38997 -13.26319 -12.72204 -12.62256 -12.32495 -12.25861 -12.18396 -12.15828 -12.05997 -11.95601 -11.92026 -11.71127 -11.51134 -11.44645 -10.94096 -10.44077 -10.19791 -9.72652 -9.30900 -8.65610 -6.11559 1.01167 1.56042 1.60957 1.85044 1.96882 2.46726 2.85467 3.05672 3.16661 3.73574 3.74408 3.88843 3.95574 4.04229 4.11937 4.16143 4.23039 4.32477 4.34798 4.44845 4.52847 4.61387 4.64145 4.70851 4.74614 4.82225 4.88759 4.89866 4.93036 4.96626 5.02900 5.04972 5.16874 5.21168 5.29098 5.30343 5.38972 5.42534 5.61365 5.73935 5.97591 6.01429 6.05954 6.36737 7.03494 7.52584 7.88260 8.53373 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.014727 B = 0.005501 C = 0.004468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.839692 B = 5088.531095 C = 6265.969300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.117 4.117 3 C 0.111 3.889 4 N -0.536 5.536 5 C 0.030 3.970 6 C -0.120 4.120 7 C -0.117 4.117 8 C 0.034 3.966 9 C 0.499 3.501 10 O -0.624 6.624 11 N -0.457 5.457 12 C -0.430 4.430 13 H 0.087 0.913 14 C -0.024 4.024 15 N -0.891 5.891 16 Si 1.117 2.883 17 H -0.287 1.287 18 H -0.268 1.268 19 H -0.263 1.263 20 C 0.113 3.887 21 C -0.111 4.111 22 C -0.117 4.117 23 C -0.142 4.142 24 H 0.135 0.865 25 H 0.092 0.908 26 H 0.067 0.933 27 H 0.049 0.951 28 H 0.049 0.951 29 H 0.061 0.939 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.063 0.937 33 H 0.097 0.903 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.257 0.743 37 H 0.034 0.966 38 H 0.070 0.930 39 H 0.040 0.960 40 H 0.059 0.941 41 H 0.056 0.944 42 H 0.063 0.937 43 H 0.057 0.943 44 H 0.051 0.949 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.668 5.893 5.634 10.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.120 4.120 3 C -0.017 4.017 4 N -0.260 5.260 5 C -0.098 4.098 6 C -0.158 4.158 7 C -0.155 4.155 8 C -0.093 4.093 9 C 0.290 3.710 10 O -0.512 6.512 11 N -0.175 5.175 12 C -0.558 4.558 13 H 0.104 0.896 14 C -0.227 4.227 15 N -0.524 5.524 16 Si 0.937 3.063 17 H -0.213 1.213 18 H -0.194 1.194 19 H -0.188 1.188 20 C -0.011 4.011 21 C -0.150 4.150 22 C -0.155 4.155 23 C -0.199 4.199 24 H 0.153 0.847 25 H 0.110 0.890 26 H 0.085 0.915 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.096 0.904 31 H 0.106 0.894 32 H 0.082 0.918 33 H 0.116 0.884 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.067 0.933 37 H 0.052 0.948 38 H 0.088 0.912 39 H 0.058 0.942 40 H 0.078 0.922 41 H 0.075 0.925 42 H 0.082 0.918 43 H 0.077 0.923 44 H 0.070 0.930 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.932 4.993 4.704 9.069 hybrid contribution 0.053 0.633 1.154 1.317 sum -5.880 5.626 5.858 10.027 Atomic orbital electron populations 1.24219 0.93322 1.02810 0.98185 1.21188 0.95715 0.93536 1.01576 1.20851 0.98123 0.92650 0.90083 1.64654 1.13003 1.36262 1.12096 1.22914 0.96914 0.90966 0.99006 1.22369 0.99018 0.98883 0.95567 1.22466 0.97592 0.98719 0.96721 1.23289 0.92214 0.98330 0.95445 1.19222 0.82488 0.85299 0.84004 1.90615 1.51620 1.73799 1.35143 1.43726 1.52421 1.13489 1.07889 1.20376 1.07333 1.42182 0.85870 0.89576 1.27772 0.95304 0.93773 1.05837 1.70826 1.07779 1.44141 1.29680 0.82900 0.74330 0.78482 0.70545 1.21252 1.19360 1.18783 1.21351 0.95287 0.83989 1.00438 1.21723 0.98454 0.94921 0.99858 1.21432 0.98926 0.93539 1.01606 1.21702 0.98750 0.98344 1.01104 0.84665 0.89000 0.91527 0.93267 0.93228 0.92082 0.90366 0.89392 0.91793 0.88421 0.92422 0.91671 0.93336 0.94774 0.91202 0.94161 0.92219 0.92522 0.91787 0.92349 0.93008 0.90872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.21 12.65 66.67 0.84 -4.37 16 2 C -0.12 -5.01 3.76 -18.73 -0.07 -5.08 16 3 C 0.11 4.25 4.88 85.56 0.42 4.66 16 4 N -0.54 -18.77 5.23 -887.61 -4.65 -23.42 16 5 C 0.03 0.84 6.65 86.45 0.58 1.42 16 6 C -0.12 -2.51 6.93 31.47 0.22 -2.29 16 7 C -0.12 -2.54 7.06 31.80 0.22 -2.31 16 8 C 0.03 0.95 5.81 86.65 0.50 1.46 16 9 C 0.50 26.09 6.97 86.52 0.60 26.70 16 10 O -0.62 -36.30 16.76 -4.24 -0.07 -36.37 16 11 N -0.46 -23.93 2.25 -639.80 -1.44 -25.37 16 12 C -0.43 -22.25 8.47 84.12 0.71 -21.54 16 13 H 0.09 4.29 6.74 -2.91 -0.02 4.27 16 14 C -0.02 -1.22 4.74 84.97 0.40 -0.81 16 15 N -0.89 -50.24 12.37 21.69 0.27 -49.97 16 16 Si 1.12 44.87 29.99 68.60 2.06 46.92 16 17 H -0.29 -11.79 7.11 99.48 0.71 -11.08 16 18 H -0.27 -10.08 7.11 99.48 0.71 -9.37 16 19 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 20 C 0.11 5.63 4.46 86.38 0.38 6.01 16 21 C -0.11 -4.65 5.49 30.59 0.17 -4.48 16 22 C -0.12 -3.93 5.93 30.59 0.18 -3.75 16 23 C -0.14 -3.78 9.91 71.98 0.71 -3.07 16 24 H 0.14 3.70 8.02 -2.91 -0.02 3.67 16 25 H 0.09 3.35 8.05 -2.91 -0.02 3.33 16 26 H 0.07 2.15 7.69 -2.39 -0.02 2.13 16 27 H 0.05 2.14 8.08 -2.39 -0.02 2.13 16 28 H 0.05 1.31 7.78 -2.39 -0.02 1.29 16 29 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.09 1.43 8.14 -2.38 -0.02 1.42 16 32 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.10 1.55 8.14 -2.38 -0.02 1.53 16 34 H 0.06 1.38 7.81 -2.39 -0.02 1.36 16 35 H 0.06 2.00 8.11 -2.39 -0.02 1.98 16 36 H 0.26 15.36 7.45 -92.71 -0.69 14.67 16 37 H 0.03 1.80 7.54 -2.39 -0.02 1.78 16 38 H 0.07 3.65 5.95 -2.38 -0.01 3.64 16 39 H 0.04 1.78 8.14 -2.38 -0.02 1.76 16 40 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 41 H 0.06 1.90 8.14 -2.39 -0.02 1.89 16 42 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 43 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 45 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 Total: -1.00 -67.47 362.56 3.05 -64.42 By element: Atomic # 1 Polarization: 30.24 SS G_CDS: 1.00 Total: 31.25 kcal Atomic # 6 Polarization: -13.34 SS G_CDS: 5.88 Total: -7.46 kcal Atomic # 7 Polarization: -92.94 SS G_CDS: -5.81 Total: -98.76 kcal Atomic # 8 Polarization: -36.30 SS G_CDS: -0.07 Total: -36.37 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.06 Total: 46.92 kcal Total: -67.47 3.05 -64.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183044337.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.329 kcal (2) G-P(sol) polarization free energy of solvation -67.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds