Wall clock time and date at job start Tue Mar 31 2020 01:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47443 * 2 1 4 4 C 1.53000 * 109.47145 * 180.02562 * 3 2 1 5 5 H 1.08995 * 109.47339 * 55.00121 * 4 3 2 6 6 C 1.52993 * 109.47162 * 294.99568 * 4 3 2 7 7 C 1.50706 * 109.46829 * 174.99857 * 4 3 2 8 8 O 1.21276 * 120.00054 * 359.97438 * 7 4 3 9 9 N 1.34775 * 119.99782 * 180.02562 * 7 4 3 10 10 C 1.47348 * 125.52508 * 359.97118 * 9 7 4 11 11 C 1.54941 * 104.90115 * 156.77271 * 10 9 7 12 12 C 1.54790 * 101.45733 * 37.25589 * 11 10 9 13 13 H 1.08998 * 112.84581 * 86.23432 * 12 11 10 14 14 C 1.53513 * 109.68503 * 212.92403 * 12 11 10 15 15 N 1.46654 * 107.05261 * 84.08589 * 14 12 11 16 16 C 1.36932 * 125.29109 * 197.35701 * 15 14 12 17 17 H 1.08002 * 119.99921 * 0.02562 * 16 15 14 18 18 C 1.38811 * 119.99980 * 180.02562 * 16 15 14 19 19 N 1.31621 * 120.00173 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00137 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.46805 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47221 * 119.99751 * 20 18 16 23 23 H 1.48501 * 109.47247 * 240.00202 * 20 18 16 24 24 C 1.46495 * 109.42081 * 17.38307 * 15 14 12 25 25 C 1.47369 * 125.54304 * 180.02562 * 9 7 4 26 26 H 1.08991 * 112.75684 * 56.11193 * 25 9 7 27 27 H 1.09002 * 109.47156 * 60.00314 * 1 2 3 28 28 H 1.08992 * 109.47389 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47143 * 300.00767 * 1 2 3 30 30 H 1.09005 * 109.47258 * 239.99649 * 2 1 3 31 31 H 1.09002 * 109.47156 * 119.99686 * 2 1 3 32 32 H 1.08992 * 109.47387 * 59.99880 * 3 2 1 33 33 H 1.09002 * 109.46688 * 299.99972 * 3 2 1 34 34 H 1.09001 * 109.47193 * 180.02562 * 6 4 3 35 35 H 1.09002 * 109.47063 * 300.00507 * 6 4 3 36 36 H 1.09003 * 109.47058 * 59.99955 * 6 4 3 37 37 H 1.09003 * 110.35249 * 37.91590 * 10 9 7 38 38 H 1.08999 * 110.44217 * 275.67424 * 10 9 7 39 39 H 1.09001 * 111.03421 * 279.21110 * 11 10 9 40 40 H 1.09004 * 111.06027 * 155.31436 * 11 10 9 41 41 H 1.08997 * 109.92402 * 324.73693 * 14 12 11 42 42 H 1.09000 * 110.08347 * 203.52649 * 14 12 11 43 43 H 0.96992 * 120.00074 * 179.97438 * 19 18 16 44 44 H 1.09002 * 109.71712 * 117.76499 * 24 15 14 45 45 H 1.09001 * 109.71175 * 238.36286 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9330 0.8531 -0.8427 6 6 4.0805 0.8327 1.3064 7 6 4.0723 2.8579 -0.1245 8 8 3.2842 3.7762 -0.2049 9 7 5.3974 3.1031 -0.1470 10 6 6.4583 2.0844 -0.0585 11 6 7.6996 2.7442 -0.7101 12 6 7.5557 4.2093 -0.2318 13 1 8.0028 4.3807 0.7473 14 6 8.0977 5.1602 -1.3082 15 7 7.0156 5.3784 -2.2737 16 6 7.1732 5.8771 -3.5392 17 1 8.1571 6.1440 -3.8959 18 6 6.0683 6.0396 -4.3637 19 7 4.8693 5.7139 -3.9293 20 14 6.2833 6.7193 -6.0904 21 1 7.7201 7.0048 -6.3346 22 1 5.8015 5.7212 -7.0788 23 1 5.4994 7.9728 -6.2302 24 6 5.7398 4.9805 -1.6736 25 6 6.0205 4.4336 -0.2631 26 1 5.6917 5.1224 0.5150 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6768 1.9564 0.8899 33 1 1.6767 1.9563 -0.8900 34 1 5.1705 0.8331 1.3061 35 1 3.7175 1.4221 2.1484 36 1 3.7172 -0.1911 1.3960 37 1 6.1712 1.1892 -0.6102 38 1 6.6631 1.8376 0.9833 39 1 7.6509 2.6810 -1.7972 40 1 8.6216 2.2993 -0.3356 41 1 8.9544 4.7070 -1.8069 42 1 8.3898 6.1086 -0.8572 43 1 4.0973 5.8278 -4.5052 44 1 5.0789 5.8448 -1.6080 45 1 5.2730 4.2060 -2.2822 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001187378239.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:49:25 Heat of formation + Delta-G solvation = -18.793597 kcal Electronic energy + Delta-G solvation = -23381.809064 eV Core-core repulsion = 20206.471476 eV Total energy + Delta-G solvation = -3175.337588 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.18976 -38.14873 -35.71888 -34.89092 -32.50062 -31.61054 -30.57877 -28.57844 -26.75601 -26.60926 -24.55091 -23.89789 -22.23196 -20.94594 -20.18636 -19.40327 -18.47521 -16.95431 -16.41169 -15.73639 -15.39078 -15.17968 -14.50724 -14.11916 -14.09510 -13.60531 -13.46337 -13.30374 -12.86390 -12.56596 -12.33719 -12.16370 -12.07747 -11.96807 -11.61362 -11.45905 -11.22783 -11.10681 -10.95982 -10.86021 -10.76659 -10.69526 -10.48623 -10.43619 -10.14420 -9.97843 -9.81671 -9.66947 -9.17989 -8.54385 -8.08731 -6.76448 -5.63076 -2.99935 3.15535 3.40260 3.43188 3.47735 3.51007 4.53865 4.61226 4.78622 4.89594 4.93777 5.00881 5.16969 5.23232 5.28151 5.29348 5.47836 5.55803 5.56676 5.62532 5.64915 5.76563 5.81946 5.83796 5.85678 5.86713 5.96260 5.98321 6.07237 6.10760 6.13959 6.25463 6.35483 6.43662 6.46914 6.63303 6.64642 6.71645 6.90611 7.64818 7.69189 7.96500 8.08342 8.34845 8.71113 9.28212 9.89135 10.52220 11.46186 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.017493 B = 0.005285 C = 0.004340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.230513 B = 5296.249555 C = 6449.880709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.100 4.100 4 C -0.106 4.106 5 H 0.093 0.907 6 C -0.150 4.150 7 C 0.529 3.471 8 O -0.530 6.530 9 N -0.607 5.607 10 C 0.103 3.897 11 C -0.123 4.123 12 C -0.111 4.111 13 H 0.087 0.913 14 C 0.145 3.855 15 N -0.603 5.603 16 C -0.234 4.234 17 H 0.079 0.921 18 C -0.006 4.006 19 N -0.914 5.914 20 Si 0.910 3.090 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.290 1.290 24 C 0.180 3.820 25 C 0.114 3.886 26 H 0.078 0.922 27 H 0.055 0.945 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.057 0.943 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.064 0.936 39 H 0.085 0.915 40 H 0.075 0.925 41 H 0.038 0.962 42 H 0.016 0.984 43 H 0.252 0.748 44 H 0.043 0.957 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.221 -13.216 11.336 17.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.138 4.138 4 C -0.128 4.128 5 H 0.111 0.889 6 C -0.207 4.207 7 C 0.316 3.684 8 O -0.406 6.406 9 N -0.341 5.341 10 C -0.020 4.020 11 C -0.161 4.161 12 C -0.131 4.131 13 H 0.105 0.895 14 C 0.018 3.982 15 N -0.330 5.330 16 C -0.362 4.362 17 H 0.096 0.904 18 C -0.203 4.203 19 N -0.560 5.560 20 Si 0.740 3.260 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.217 1.217 24 C 0.055 3.945 25 C 0.011 3.989 26 H 0.096 0.904 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.104 0.896 40 H 0.094 0.906 41 H 0.056 0.944 42 H 0.034 0.966 43 H 0.063 0.937 44 H 0.061 0.939 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.445 -12.681 11.108 16.864 hybrid contribution 0.105 0.366 -0.966 1.039 sum -0.340 -12.315 10.141 15.957 Atomic orbital electron populations 1.21758 0.95934 1.01201 1.02051 1.21592 0.95871 0.96916 1.01813 1.21421 0.92459 0.96290 1.03662 1.21265 0.97535 0.93911 1.00055 0.88940 1.21952 1.01773 1.00894 0.96101 1.20205 0.80733 0.91058 0.76354 1.90723 1.54229 1.46440 1.49186 1.48580 1.04699 1.08119 1.72718 1.22343 0.88097 0.91903 0.99633 1.22776 0.96374 0.94776 1.02130 1.22932 0.95095 0.95865 0.99209 0.89486 1.21061 0.92423 0.94913 0.89788 1.44158 1.01443 1.75580 1.11797 1.19051 0.93674 1.35693 0.87776 0.90352 1.24849 0.95414 1.01479 0.98551 1.70026 0.97676 1.52879 1.35468 0.86080 0.77231 0.78296 0.84348 1.20505 1.21814 1.21739 1.21255 0.87799 0.98820 0.86634 1.22817 0.91179 0.84016 1.00933 0.90378 0.92590 0.93033 0.92792 0.92096 0.91972 0.91468 0.90877 0.91651 0.92361 0.91626 0.91174 0.91817 0.89589 0.90631 0.94435 0.96635 0.93746 0.93884 0.92675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.91 37.15 0.37 -1.08 16 2 C -0.12 -1.26 5.69 -26.73 -0.15 -1.42 16 3 C -0.10 -1.33 4.03 -26.73 -0.11 -1.44 16 4 C -0.11 -1.44 2.08 -91.77 -0.19 -1.63 16 5 H 0.09 1.19 7.84 -51.93 -0.41 0.78 16 6 C -0.15 -1.55 8.76 37.15 0.33 -1.23 16 7 C 0.53 9.82 6.93 -10.98 -0.08 9.74 16 8 O -0.53 -12.26 16.01 5.56 0.09 -12.17 16 9 N -0.61 -10.74 2.83 -161.77 -0.46 -11.19 16 10 C 0.10 1.38 5.13 -2.55 -0.01 1.37 16 11 C -0.12 -1.77 6.32 -24.76 -0.16 -1.93 16 12 C -0.11 -1.86 3.97 -88.26 -0.35 -2.21 16 13 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 14 C 0.14 2.96 6.50 -3.69 -0.02 2.93 16 15 N -0.60 -15.70 3.37 -172.27 -0.58 -16.28 16 16 C -0.23 -6.64 10.25 -15.06 -0.15 -6.80 16 17 H 0.08 2.14 7.83 -52.49 -0.41 1.72 16 18 C -0.01 -0.18 5.48 -17.43 -0.10 -0.27 16 19 N -0.91 -28.27 10.23 55.49 0.57 -27.70 16 20 Si 0.91 22.67 29.55 -169.99 -5.02 17.64 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 23 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 24 C 0.18 4.68 4.62 -3.59 -0.02 4.66 16 25 C 0.11 2.29 3.81 -65.85 -0.25 2.04 16 26 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.55 6.57 -51.93 -0.34 0.21 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.07 1.14 7.95 -51.93 -0.41 0.73 16 34 H 0.06 0.63 4.97 -51.93 -0.26 0.37 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.55 6.57 -51.93 -0.34 0.21 16 37 H 0.07 0.84 7.41 -51.93 -0.38 0.45 16 38 H 0.06 0.69 7.01 -51.93 -0.36 0.33 16 39 H 0.09 1.51 7.93 -51.93 -0.41 1.10 16 40 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.04 0.73 7.95 -51.93 -0.41 0.32 16 42 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 44 H 0.04 1.30 7.51 -51.93 -0.39 0.91 16 45 H 0.06 1.62 6.89 -51.93 -0.36 1.26 16 LS Contribution 342.95 15.07 5.17 5.17 Total: -1.00 -33.85 342.95 -8.99 -42.83 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -7.85 Total: -1.03 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: -0.89 Total: 2.74 kcal Atomic # 7 Polarization: -54.71 SS G_CDS: -0.47 Total: -55.18 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: 0.09 Total: -12.17 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.85 -8.99 -42.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187378239.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.039 kcal (2) G-P(sol) polarization free energy of solvation -33.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds