Wall clock time and date at job start Tue Mar 31 2020 01:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47443 * 2 1 4 4 C 1.53000 * 109.47145 * 180.02562 * 3 2 1 5 5 H 1.08995 * 109.47339 * 55.00121 * 4 3 2 6 6 C 1.52993 * 109.47162 * 294.99568 * 4 3 2 7 7 C 1.50706 * 109.46829 * 174.99857 * 4 3 2 8 8 O 1.21276 * 120.00054 * 359.97438 * 7 4 3 9 9 N 1.34775 * 119.99782 * 180.02562 * 7 4 3 10 10 C 1.47348 * 125.52508 * 359.97118 * 9 7 4 11 11 C 1.54941 * 104.90115 * 156.77271 * 10 9 7 12 12 C 1.54790 * 101.45733 * 37.25589 * 11 10 9 13 13 H 1.08998 * 112.84581 * 86.23432 * 12 11 10 14 14 C 1.53513 * 109.68503 * 212.92403 * 12 11 10 15 15 N 1.46654 * 107.05261 * 84.08589 * 14 12 11 16 16 C 1.36932 * 125.29109 * 197.35701 * 15 14 12 17 17 H 1.08002 * 119.99921 * 0.02562 * 16 15 14 18 18 C 1.38811 * 119.99980 * 180.02562 * 16 15 14 19 19 N 1.31621 * 120.00173 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00137 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.46805 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47221 * 119.99751 * 20 18 16 23 23 H 1.48501 * 109.47247 * 240.00202 * 20 18 16 24 24 C 1.46495 * 109.42081 * 17.38307 * 15 14 12 25 25 C 1.47369 * 125.54304 * 180.02562 * 9 7 4 26 26 H 1.08991 * 112.75684 * 56.11193 * 25 9 7 27 27 H 1.09002 * 109.47156 * 60.00314 * 1 2 3 28 28 H 1.08992 * 109.47389 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47143 * 300.00767 * 1 2 3 30 30 H 1.09005 * 109.47258 * 239.99649 * 2 1 3 31 31 H 1.09002 * 109.47156 * 119.99686 * 2 1 3 32 32 H 1.08992 * 109.47387 * 59.99880 * 3 2 1 33 33 H 1.09002 * 109.46688 * 299.99972 * 3 2 1 34 34 H 1.09001 * 109.47193 * 180.02562 * 6 4 3 35 35 H 1.09002 * 109.47063 * 300.00507 * 6 4 3 36 36 H 1.09003 * 109.47058 * 59.99955 * 6 4 3 37 37 H 1.09003 * 110.35249 * 37.91590 * 10 9 7 38 38 H 1.08999 * 110.44217 * 275.67424 * 10 9 7 39 39 H 1.09001 * 111.03421 * 279.21110 * 11 10 9 40 40 H 1.09004 * 111.06027 * 155.31436 * 11 10 9 41 41 H 1.08997 * 109.92402 * 324.73693 * 14 12 11 42 42 H 1.09000 * 110.08347 * 203.52649 * 14 12 11 43 43 H 0.96992 * 120.00074 * 179.97438 * 19 18 16 44 44 H 1.09002 * 109.71712 * 117.76499 * 24 15 14 45 45 H 1.09001 * 109.71175 * 238.36286 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9330 0.8531 -0.8427 6 6 4.0805 0.8327 1.3064 7 6 4.0723 2.8579 -0.1245 8 8 3.2842 3.7762 -0.2049 9 7 5.3974 3.1031 -0.1470 10 6 6.4583 2.0844 -0.0585 11 6 7.6996 2.7442 -0.7101 12 6 7.5557 4.2093 -0.2318 13 1 8.0028 4.3807 0.7473 14 6 8.0977 5.1602 -1.3082 15 7 7.0156 5.3784 -2.2737 16 6 7.1732 5.8771 -3.5392 17 1 8.1571 6.1440 -3.8959 18 6 6.0683 6.0396 -4.3637 19 7 4.8693 5.7139 -3.9293 20 14 6.2833 6.7193 -6.0904 21 1 7.7201 7.0048 -6.3346 22 1 5.8015 5.7212 -7.0788 23 1 5.4994 7.9728 -6.2302 24 6 5.7398 4.9805 -1.6736 25 6 6.0205 4.4336 -0.2631 26 1 5.6917 5.1224 0.5150 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6768 1.9564 0.8899 33 1 1.6767 1.9563 -0.8900 34 1 5.1705 0.8331 1.3061 35 1 3.7175 1.4221 2.1484 36 1 3.7172 -0.1911 1.3960 37 1 6.1712 1.1892 -0.6102 38 1 6.6631 1.8376 0.9833 39 1 7.6509 2.6810 -1.7972 40 1 8.6216 2.2993 -0.3356 41 1 8.9544 4.7070 -1.8069 42 1 8.3898 6.1086 -0.8572 43 1 4.0973 5.8278 -4.5052 44 1 5.0789 5.8448 -1.6080 45 1 5.2730 4.2060 -2.2822 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001187378239.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:49:25 Heat of formation + Delta-G solvation = -40.952545 kcal Electronic energy + Delta-G solvation = -23382.769948 eV Core-core repulsion = 20206.471476 eV Total energy + Delta-G solvation = -3176.298472 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.63505 -39.64834 -36.85677 -36.63571 -34.20099 -32.84034 -32.13085 -30.33331 -28.39080 -27.53455 -26.49618 -25.14685 -23.36992 -22.45181 -21.60633 -20.81146 -19.91293 -18.93427 -17.87453 -17.24514 -16.83654 -16.42112 -16.18929 -15.63057 -15.41206 -15.04757 -14.72957 -14.53579 -14.42050 -13.82397 -13.67949 -13.47637 -13.37727 -13.21296 -13.06570 -12.96700 -12.76865 -12.69845 -12.55399 -12.14973 -12.07505 -11.88951 -11.83774 -11.76441 -11.68958 -11.49137 -11.42325 -11.40284 -10.78430 -10.61628 -9.57837 -8.92798 -7.86401 -5.26164 1.40183 1.42702 1.53344 1.72563 2.05794 2.46086 3.30036 3.36262 3.66786 3.70744 3.77553 3.83299 3.95139 4.03896 4.29025 4.32417 4.36279 4.37397 4.40731 4.48888 4.58322 4.67334 4.73025 4.80710 4.85651 4.91211 4.96463 4.98163 5.05157 5.11035 5.13260 5.19678 5.22601 5.25893 5.31314 5.43130 5.44795 5.50840 5.51458 5.60391 5.79200 6.16414 6.67880 7.04641 7.28259 7.76245 8.37350 9.21708 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.017493 B = 0.005285 C = 0.004340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.230513 B = 5296.249555 C = 6449.880709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.116 4.116 3 C -0.099 4.099 4 C -0.097 4.097 5 H 0.104 0.896 6 C -0.142 4.142 7 C 0.513 3.487 8 O -0.594 6.594 9 N -0.609 5.609 10 C 0.100 3.900 11 C -0.116 4.116 12 C -0.092 4.092 13 H 0.135 0.865 14 C 0.135 3.865 15 N -0.624 5.624 16 C -0.241 4.241 17 H 0.091 0.909 18 C -0.072 4.072 19 N -0.954 5.954 20 Si 0.981 3.019 21 H -0.256 1.256 22 H -0.293 1.293 23 H -0.296 1.296 24 C 0.203 3.797 25 C 0.115 3.885 26 H 0.069 0.931 27 H 0.040 0.960 28 H 0.071 0.929 29 H 0.053 0.947 30 H 0.067 0.933 31 H 0.087 0.913 32 H 0.056 0.944 33 H 0.033 0.967 34 H 0.081 0.919 35 H 0.051 0.949 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.109 0.891 39 H 0.047 0.953 40 H 0.126 0.874 41 H 0.054 0.946 42 H 0.021 0.979 43 H 0.241 0.759 44 H -0.023 1.023 45 H 0.009 0.991 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.022 -16.162 13.091 21.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.153 4.153 3 C -0.137 4.137 4 C -0.118 4.118 5 H 0.122 0.878 6 C -0.198 4.198 7 C 0.304 3.696 8 O -0.474 6.474 9 N -0.341 5.341 10 C -0.021 4.021 11 C -0.154 4.154 12 C -0.111 4.111 13 H 0.153 0.847 14 C 0.010 3.990 15 N -0.350 5.350 16 C -0.370 4.370 17 H 0.109 0.891 18 C -0.265 4.265 19 N -0.603 5.603 20 Si 0.809 3.191 21 H -0.180 1.180 22 H -0.220 1.220 23 H -0.223 1.223 24 C 0.077 3.923 25 C 0.010 3.990 26 H 0.087 0.913 27 H 0.060 0.940 28 H 0.090 0.910 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.106 0.894 32 H 0.074 0.926 33 H 0.052 0.948 34 H 0.100 0.900 35 H 0.070 0.930 36 H 0.114 0.886 37 H 0.107 0.893 38 H 0.127 0.873 39 H 0.066 0.934 40 H 0.144 0.856 41 H 0.072 0.928 42 H 0.039 0.961 43 H 0.051 0.949 44 H -0.005 1.005 45 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges 2.441 -15.664 12.889 20.432 hybrid contribution -0.737 1.356 -1.517 2.164 sum 1.705 -14.308 11.372 18.356 Atomic orbital electron populations 1.21783 0.95711 1.02270 1.01397 1.21559 0.96077 0.94389 1.03279 1.21398 0.92741 0.98267 1.01289 1.21320 0.97309 0.90465 1.02738 0.87767 1.21952 1.02729 1.01941 0.93225 1.21339 0.80646 0.92712 0.74942 1.90689 1.55960 1.48797 1.51975 1.48721 1.05505 1.08181 1.71740 1.22741 0.85865 0.90989 1.02542 1.22790 0.99204 0.93310 1.00069 1.22995 0.91368 0.96538 1.00230 0.84734 1.21365 0.91410 0.96324 0.89900 1.44474 1.03100 1.75267 1.12195 1.19561 0.94047 1.34473 0.88918 0.89101 1.25800 0.95095 1.02621 1.02976 1.70339 0.98421 1.54911 1.36653 0.84971 0.78161 0.76911 0.79078 1.17995 1.21975 1.22347 1.20756 0.86910 0.94910 0.89723 1.22547 0.94540 0.85472 0.96411 0.91304 0.94048 0.91006 0.92805 0.91466 0.89431 0.92551 0.94769 0.90018 0.92974 0.88624 0.89302 0.87307 0.93373 0.85603 0.92787 0.96088 0.94935 1.00472 0.97288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 9.91 71.98 0.71 -2.09 16 2 C -0.12 -2.15 5.69 30.59 0.17 -1.97 16 3 C -0.10 -2.68 4.03 30.60 0.12 -2.56 16 4 C -0.10 -2.54 2.08 -11.54 -0.02 -2.57 16 5 H 0.10 2.49 7.84 -2.39 -0.02 2.47 16 6 C -0.14 -2.39 8.76 71.98 0.63 -1.76 16 7 C 0.51 19.70 6.93 87.66 0.61 20.31 16 8 O -0.59 -29.86 16.01 -3.02 -0.05 -29.91 16 9 N -0.61 -21.28 2.83 -784.12 -2.22 -23.49 16 10 C 0.10 2.25 5.13 86.88 0.45 2.70 16 11 C -0.12 -2.89 6.32 31.87 0.20 -2.69 16 12 C -0.09 -2.81 3.97 -9.26 -0.04 -2.85 16 13 H 0.13 2.97 8.14 -2.39 -0.02 2.95 16 14 C 0.13 5.33 6.50 86.52 0.56 5.89 16 15 N -0.62 -33.52 3.37 -698.93 -2.36 -35.87 16 16 C -0.24 -14.05 10.25 84.03 0.86 -13.19 16 17 H 0.09 4.94 7.83 -2.91 -0.02 4.91 16 18 C -0.07 -4.39 5.48 84.86 0.47 -3.92 16 19 N -0.95 -63.33 10.23 21.65 0.22 -63.11 16 20 Si 0.98 48.18 29.55 68.60 2.03 50.21 16 21 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 22 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 23 H -0.30 -14.70 7.11 99.48 0.71 -14.00 16 24 C 0.20 11.28 4.62 86.67 0.40 11.69 16 25 C 0.12 4.71 3.81 45.87 0.17 4.88 16 26 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 27 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 31 H 0.09 1.21 6.57 -2.39 -0.02 1.20 16 32 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.03 1.16 7.95 -2.39 -0.02 1.14 16 34 H 0.08 1.12 4.97 -2.39 -0.01 1.11 16 35 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.10 1.10 6.57 -2.39 -0.02 1.08 16 37 H 0.09 1.74 7.41 -2.39 -0.02 1.72 16 38 H 0.11 1.61 7.01 -2.39 -0.02 1.60 16 39 H 0.05 1.59 7.93 -2.39 -0.02 1.57 16 40 H 0.13 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.05 1.97 7.95 -2.39 -0.02 1.96 16 42 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.24 15.74 8.31 -92.71 -0.77 14.97 16 44 H -0.02 -1.54 7.51 -2.39 -0.02 -1.56 16 45 H 0.01 0.57 6.89 -2.39 -0.02 0.55 16 Total: -1.00 -84.76 342.95 3.87 -80.89 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: 0.95 Total: 9.43 kcal Atomic # 6 Polarization: 6.56 SS G_CDS: 5.30 Total: 11.86 kcal Atomic # 7 Polarization: -118.13 SS G_CDS: -4.35 Total: -122.48 kcal Atomic # 8 Polarization: -29.86 SS G_CDS: -0.05 Total: -29.91 kcal Atomic # 14 Polarization: 48.18 SS G_CDS: 2.03 Total: 50.21 kcal Total: -84.76 3.87 -80.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187378239.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.933 kcal (2) G-P(sol) polarization free energy of solvation -84.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds