Wall clock time and date at job start Tue Mar 31 2020 03:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46871 * 2 1 4 4 H 1.08997 * 109.47190 * 304.99994 * 3 2 1 5 5 C 1.53004 * 109.46769 * 65.00070 * 3 2 1 6 6 C 1.52996 * 109.47261 * 184.99864 * 3 2 1 7 7 C 1.50697 * 109.47561 * 175.00257 * 6 3 2 8 8 O 1.21288 * 119.99465 * 359.97438 * 7 6 3 9 9 N 1.34769 * 120.00513 * 180.02562 * 7 6 3 10 10 C 1.47406 * 125.58769 * 0.02562 * 9 7 6 11 11 C 1.54849 * 104.81070 * 204.34813 * 10 9 7 12 12 C 1.55126 * 101.77885 * 322.81435 * 11 10 9 13 13 H 1.09000 * 113.46061 * 159.24471 * 12 11 10 14 14 C 1.54045 * 108.26034 * 286.09337 * 12 11 10 15 15 N 1.46700 * 106.82858 * 135.80457 * 14 12 11 16 16 C 1.36936 * 125.31981 * 161.80345 * 15 14 12 17 17 H 1.08003 * 120.00113 * 359.97438 * 16 15 14 18 18 C 1.38816 * 120.00197 * 180.02562 * 16 15 14 19 19 N 1.31627 * 119.99597 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 120.00176 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.47444 * 59.99868 * 20 18 16 22 22 H 1.48502 * 109.46922 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47186 * 299.99693 * 20 18 16 24 24 C 1.46626 * 109.35607 * 341.82030 * 15 14 12 25 25 C 1.46726 * 125.59159 * 179.71962 * 9 7 6 26 26 H 1.08996 * 111.33629 * 56.38361 * 25 9 7 27 27 H 1.08994 * 109.47343 * 300.00014 * 1 2 3 28 28 H 1.08994 * 109.46787 * 60.00143 * 1 2 3 29 29 H 1.09001 * 109.46362 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47150 * 240.00235 * 2 1 3 31 31 H 1.09000 * 109.47081 * 120.00198 * 2 1 3 32 32 H 1.08997 * 109.47327 * 60.00007 * 5 3 2 33 33 H 1.08997 * 109.46940 * 179.97438 * 5 3 2 34 34 H 1.08998 * 109.47150 * 299.99608 * 5 3 2 35 35 H 1.08999 * 109.46830 * 54.99730 * 6 3 2 36 36 H 1.09006 * 109.47237 * 295.00499 * 6 3 2 37 37 H 1.08998 * 110.36969 * 323.18010 * 10 9 7 38 38 H 1.08993 * 110.36991 * 85.51108 * 10 9 7 39 39 H 1.08998 * 110.96886 * 80.93819 * 11 10 9 40 40 H 1.09001 * 110.96586 * 204.69703 * 11 10 9 41 41 H 1.09000 * 109.99114 * 255.15365 * 14 12 11 42 42 H 1.09003 * 109.98400 * 16.41800 * 14 12 11 43 43 H 0.96995 * 119.99665 * 180.02562 * 19 18 16 44 44 H 1.09004 * 109.76013 * 120.93245 * 24 15 14 45 45 H 1.09002 * 109.75781 * 241.62664 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6352 2.1265 1.3074 6 6 3.5648 1.4445 -0.1257 7 6 4.0569 2.8635 -0.2491 8 8 3.2658 3.7828 -0.2382 9 7 5.3759 3.1110 -0.3728 10 6 6.4408 2.0922 -0.4021 11 6 7.7140 2.8367 0.0697 12 6 7.5242 4.2322 -0.5807 13 1 8.1080 5.0176 -0.1009 14 6 7.7971 4.1018 -2.0912 15 7 6.7380 4.8474 -2.7800 16 6 6.7908 5.2811 -4.0778 17 1 7.6650 5.0798 -4.6793 18 6 5.7213 5.9804 -4.6201 19 7 4.6561 6.2261 -3.8868 20 14 5.7936 6.5726 -6.3901 21 1 5.9564 5.4072 -7.2959 22 1 4.5361 7.2882 -6.7245 23 1 6.9462 7.4940 -6.5571 24 6 5.6142 5.0558 -1.8616 25 6 5.9869 4.4383 -0.5066 26 1 5.7118 5.0871 0.3250 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 2.0698 1.5875 2.1492 33 1 1.9988 3.1540 1.3076 34 1 0.5489 2.1252 1.3969 35 1 3.8570 0.8802 -1.0112 36 1 4.0030 0.9837 0.7597 37 1 6.2039 1.2759 0.2803 38 1 6.5761 1.7137 -1.4152 39 1 7.7408 2.9134 1.1567 40 1 8.6131 2.3496 -0.3077 41 1 8.7706 4.5288 -2.3321 42 1 7.7674 3.0528 -2.3859 43 1 3.9086 6.7144 -4.2658 44 1 5.4294 6.1234 -1.7417 45 1 4.7216 4.5695 -2.2551 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001187690883.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:03:25 Heat of formation + Delta-G solvation = -19.843925 kcal Electronic energy + Delta-G solvation = -23330.550664 eV Core-core repulsion = 20155.167530 eV Total energy + Delta-G solvation = -3175.383134 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.18230 -38.24502 -36.01593 -34.72685 -32.17322 -30.82008 -30.67328 -28.87447 -27.42671 -26.15115 -24.67022 -24.02743 -22.33192 -20.74363 -19.98818 -19.39567 -18.30357 -16.99496 -16.52198 -15.71444 -15.50907 -14.83378 -14.50718 -14.25879 -14.12735 -13.74503 -13.27311 -13.23612 -12.97891 -12.56766 -12.37244 -12.09404 -11.96429 -11.76435 -11.69654 -11.46660 -11.25112 -11.07979 -10.97327 -10.72898 -10.68370 -10.53568 -10.49048 -10.41845 -10.19606 -10.11762 -9.82260 -9.65067 -9.15147 -8.53591 -8.06087 -6.76375 -5.62910 -2.99156 3.15178 3.43562 3.45834 3.47545 3.50001 4.53184 4.66327 4.82183 4.85669 4.92693 4.99111 5.14891 5.28980 5.33937 5.51925 5.53050 5.55229 5.56358 5.69578 5.71130 5.74337 5.78594 5.81799 5.85887 5.90573 5.96141 6.05078 6.08274 6.10550 6.24577 6.26770 6.38566 6.51633 6.54456 6.60533 6.64182 6.70042 6.92171 7.61421 7.71817 7.95045 8.09411 8.34765 8.72884 9.28483 9.89529 10.53307 11.46720 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.016244 B = 0.005311 C = 0.004374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.257036 B = 5271.042566 C = 6400.302267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.077 4.077 4 H 0.080 0.920 5 C -0.152 4.152 6 C -0.130 4.130 7 C 0.525 3.475 8 O -0.529 6.529 9 N -0.606 5.606 10 C 0.102 3.898 11 C -0.124 4.124 12 C -0.111 4.111 13 H 0.096 0.904 14 C 0.143 3.857 15 N -0.603 5.603 16 C -0.235 4.235 17 H 0.077 0.923 18 C -0.005 4.005 19 N -0.915 5.915 20 Si 0.911 3.089 21 H -0.286 1.286 22 H -0.290 1.290 23 H -0.285 1.285 24 C 0.177 3.823 25 C 0.115 3.885 26 H 0.076 0.924 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.050 0.950 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.043 0.957 33 H 0.076 0.924 34 H 0.051 0.949 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.081 0.919 41 H 0.033 0.967 42 H 0.017 0.983 43 H 0.253 0.747 44 H 0.050 0.950 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.233 -12.821 11.399 17.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C -0.096 4.096 4 H 0.098 0.902 5 C -0.209 4.209 6 C -0.170 4.170 7 C 0.314 3.686 8 O -0.405 6.405 9 N -0.341 5.341 10 C -0.022 4.022 11 C -0.163 4.163 12 C -0.131 4.131 13 H 0.115 0.885 14 C 0.016 3.984 15 N -0.329 5.329 16 C -0.364 4.364 17 H 0.095 0.905 18 C -0.202 4.202 19 N -0.562 5.562 20 Si 0.741 3.259 21 H -0.212 1.212 22 H -0.216 1.216 23 H -0.212 1.212 24 C 0.052 3.948 25 C 0.011 3.989 26 H 0.094 0.906 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.062 0.938 33 H 0.095 0.905 34 H 0.070 0.930 35 H 0.106 0.894 36 H 0.104 0.896 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.099 0.901 41 H 0.051 0.949 42 H 0.035 0.965 43 H 0.064 0.936 44 H 0.068 0.932 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.447 -12.216 11.262 16.621 hybrid contribution 0.126 0.242 -1.034 1.069 sum -0.321 -11.974 10.228 15.751 Atomic orbital electron populations 1.21805 0.95895 1.01144 1.02170 1.21585 0.96043 0.96375 1.01634 1.20921 0.93026 0.95663 1.00000 0.90187 1.21976 1.00841 1.02383 0.95692 1.21715 0.97394 0.94487 1.03453 1.20193 0.80560 0.91382 0.76494 1.90694 1.53442 1.46619 1.49764 1.48460 1.05287 1.08016 1.72306 1.22282 0.87382 0.91418 1.01080 1.22750 0.97233 0.96084 1.00199 1.23145 0.95358 0.96662 0.97939 0.88531 1.21291 0.92968 0.95205 0.88907 1.44215 1.14301 1.64482 1.09936 1.18964 1.01473 1.29654 0.86268 0.90536 1.24838 0.96435 1.00683 0.98280 1.69994 1.06426 1.44761 1.35015 0.86224 0.76785 0.78464 0.84402 1.21229 1.21592 1.21156 1.21216 0.90861 0.98689 0.84054 1.22575 0.91666 0.84031 1.00600 0.90570 0.92462 0.92634 0.93124 0.92104 0.92228 0.93788 0.90530 0.92958 0.89373 0.89648 0.91349 0.91233 0.91155 0.90062 0.94858 0.96509 0.93614 0.93172 0.92786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.67 37.16 0.36 -1.12 16 2 C -0.12 -1.22 5.40 -26.73 -0.14 -1.37 16 3 C -0.08 -1.01 2.04 -90.62 -0.18 -1.20 16 4 H 0.08 1.25 7.95 -51.93 -0.41 0.84 16 5 C -0.15 -1.98 8.69 37.16 0.32 -1.66 16 6 C -0.13 -1.74 4.17 -27.89 -0.12 -1.86 16 7 C 0.53 9.57 7.11 -10.99 -0.08 9.49 16 8 O -0.53 -11.74 13.83 5.55 0.08 -11.66 16 9 N -0.61 -10.71 2.99 -162.42 -0.48 -11.20 16 10 C 0.10 1.38 6.22 -2.57 -0.02 1.37 16 11 C -0.12 -1.55 6.34 -24.63 -0.16 -1.70 16 12 C -0.11 -1.86 4.33 -87.74 -0.38 -2.24 16 13 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 14 C 0.14 2.90 6.45 -3.39 -0.02 2.87 16 15 N -0.60 -15.75 3.38 -172.02 -0.58 -16.33 16 16 C -0.24 -6.72 10.25 -15.06 -0.15 -6.88 16 17 H 0.08 2.09 7.83 -52.48 -0.41 1.68 16 18 C -0.01 -0.16 5.48 -17.43 -0.10 -0.25 16 19 N -0.92 -28.28 10.24 55.49 0.57 -27.71 16 20 Si 0.91 22.70 29.55 -169.99 -5.02 17.68 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 23 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 24 C 0.18 4.58 4.91 -3.71 -0.02 4.56 16 25 C 0.11 2.29 3.60 -66.34 -0.24 2.05 16 26 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 27 H 0.06 0.54 6.56 -51.93 -0.34 0.20 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.08 1.23 5.95 -51.93 -0.31 0.92 16 34 H 0.05 0.62 6.56 -51.93 -0.34 0.28 16 35 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 36 H 0.09 0.93 7.84 -51.93 -0.41 0.52 16 37 H 0.07 0.72 7.46 -51.93 -0.39 0.33 16 38 H 0.07 1.01 7.18 -51.93 -0.37 0.64 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.08 0.87 8.08 -51.93 -0.42 0.45 16 41 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.02 0.34 6.52 -51.93 -0.34 0.00 16 43 H 0.25 7.66 8.31 -40.82 -0.34 7.33 16 44 H 0.05 1.46 7.33 -51.93 -0.38 1.08 16 45 H 0.05 1.61 6.64 -51.93 -0.34 1.27 16 LS Contribution 341.64 15.07 5.15 5.15 Total: -1.00 -33.53 341.64 -9.05 -42.58 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -7.83 Total: -0.56 kcal Atomic # 6 Polarization: 2.99 SS G_CDS: -0.92 Total: 2.06 kcal Atomic # 7 Polarization: -54.74 SS G_CDS: -0.50 Total: -55.24 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: 0.08 Total: -11.66 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.68 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.53 -9.05 -42.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187690883.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.733 kcal (2) G-P(sol) polarization free energy of solvation -33.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds