Wall clock time and date at job start Tue Mar 31 2020 03:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46871 * 2 1 4 4 H 1.08997 * 109.47190 * 304.99994 * 3 2 1 5 5 C 1.53004 * 109.46769 * 65.00070 * 3 2 1 6 6 C 1.52996 * 109.47261 * 184.99864 * 3 2 1 7 7 C 1.50697 * 109.47561 * 175.00257 * 6 3 2 8 8 O 1.21288 * 119.99465 * 359.97438 * 7 6 3 9 9 N 1.34769 * 120.00513 * 180.02562 * 7 6 3 10 10 C 1.47406 * 125.58769 * 0.02562 * 9 7 6 11 11 C 1.54849 * 104.81070 * 204.34813 * 10 9 7 12 12 C 1.55126 * 101.77885 * 322.81435 * 11 10 9 13 13 H 1.09000 * 113.46061 * 159.24471 * 12 11 10 14 14 C 1.54045 * 108.26034 * 286.09337 * 12 11 10 15 15 N 1.46700 * 106.82858 * 135.80457 * 14 12 11 16 16 C 1.36936 * 125.31981 * 161.80345 * 15 14 12 17 17 H 1.08003 * 120.00113 * 359.97438 * 16 15 14 18 18 C 1.38816 * 120.00197 * 180.02562 * 16 15 14 19 19 N 1.31627 * 119.99597 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 120.00176 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.47444 * 59.99868 * 20 18 16 22 22 H 1.48502 * 109.46922 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47186 * 299.99693 * 20 18 16 24 24 C 1.46626 * 109.35607 * 341.82030 * 15 14 12 25 25 C 1.46726 * 125.59159 * 179.71962 * 9 7 6 26 26 H 1.08996 * 111.33629 * 56.38361 * 25 9 7 27 27 H 1.08994 * 109.47343 * 300.00014 * 1 2 3 28 28 H 1.08994 * 109.46787 * 60.00143 * 1 2 3 29 29 H 1.09001 * 109.46362 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47150 * 240.00235 * 2 1 3 31 31 H 1.09000 * 109.47081 * 120.00198 * 2 1 3 32 32 H 1.08997 * 109.47327 * 60.00007 * 5 3 2 33 33 H 1.08997 * 109.46940 * 179.97438 * 5 3 2 34 34 H 1.08998 * 109.47150 * 299.99608 * 5 3 2 35 35 H 1.08999 * 109.46830 * 54.99730 * 6 3 2 36 36 H 1.09006 * 109.47237 * 295.00499 * 6 3 2 37 37 H 1.08998 * 110.36969 * 323.18010 * 10 9 7 38 38 H 1.08993 * 110.36991 * 85.51108 * 10 9 7 39 39 H 1.08998 * 110.96886 * 80.93819 * 11 10 9 40 40 H 1.09001 * 110.96586 * 204.69703 * 11 10 9 41 41 H 1.09000 * 109.99114 * 255.15365 * 14 12 11 42 42 H 1.09003 * 109.98400 * 16.41800 * 14 12 11 43 43 H 0.96995 * 119.99665 * 180.02562 * 19 18 16 44 44 H 1.09004 * 109.76013 * 120.93245 * 24 15 14 45 45 H 1.09002 * 109.75781 * 241.62664 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6352 2.1265 1.3074 6 6 3.5648 1.4445 -0.1257 7 6 4.0569 2.8635 -0.2491 8 8 3.2658 3.7828 -0.2382 9 7 5.3759 3.1110 -0.3728 10 6 6.4408 2.0922 -0.4021 11 6 7.7140 2.8367 0.0697 12 6 7.5242 4.2322 -0.5807 13 1 8.1080 5.0176 -0.1009 14 6 7.7971 4.1018 -2.0912 15 7 6.7380 4.8474 -2.7800 16 6 6.7908 5.2811 -4.0778 17 1 7.6650 5.0798 -4.6793 18 6 5.7213 5.9804 -4.6201 19 7 4.6561 6.2261 -3.8868 20 14 5.7936 6.5726 -6.3901 21 1 5.9564 5.4072 -7.2959 22 1 4.5361 7.2882 -6.7245 23 1 6.9462 7.4940 -6.5571 24 6 5.6142 5.0558 -1.8616 25 6 5.9869 4.4383 -0.5066 26 1 5.7118 5.0871 0.3250 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 2.0698 1.5875 2.1492 33 1 1.9988 3.1540 1.3076 34 1 0.5489 2.1252 1.3969 35 1 3.8570 0.8802 -1.0112 36 1 4.0030 0.9837 0.7597 37 1 6.2039 1.2759 0.2803 38 1 6.5761 1.7137 -1.4152 39 1 7.7408 2.9134 1.1567 40 1 8.6131 2.3496 -0.3077 41 1 8.7706 4.5288 -2.3321 42 1 7.7674 3.0528 -2.3859 43 1 3.9086 6.7144 -4.2658 44 1 5.4294 6.1234 -1.7417 45 1 4.7216 4.5695 -2.2551 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001187690883.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:03:25 Heat of formation + Delta-G solvation = -41.424648 kcal Electronic energy + Delta-G solvation = -23331.486474 eV Core-core repulsion = 20155.167530 eV Total energy + Delta-G solvation = -3176.318944 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.61211 -39.66174 -37.14656 -36.49755 -33.97066 -32.44512 -31.72998 -30.49042 -28.67978 -27.67239 -26.58893 -25.05735 -23.56961 -22.53186 -21.19629 -20.67265 -19.72646 -18.90769 -18.03528 -17.05475 -16.94199 -16.52883 -15.80061 -15.63996 -15.49610 -15.23440 -14.66748 -14.51176 -14.31660 -13.95147 -13.92106 -13.45733 -13.30954 -13.01078 -12.91107 -12.78164 -12.76417 -12.68062 -12.38498 -12.20836 -12.18329 -11.88851 -11.85927 -11.72474 -11.57726 -11.51546 -11.39356 -11.38461 -10.77493 -10.55193 -9.52919 -8.91929 -7.85618 -5.24717 1.40344 1.45115 1.51820 1.75944 2.14688 2.46677 3.30796 3.41829 3.59659 3.79731 3.82060 3.85418 3.97858 4.03096 4.28154 4.28613 4.44114 4.48171 4.53592 4.56187 4.63754 4.68895 4.72574 4.76923 4.83464 4.89209 4.92324 4.96154 5.12646 5.14844 5.16844 5.19476 5.24230 5.32577 5.33967 5.40910 5.43133 5.52771 5.61309 5.65952 5.79768 6.16942 6.72236 7.05887 7.34188 7.77448 8.39409 9.22512 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.016244 B = 0.005311 C = 0.004374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.257036 B = 5271.042566 C = 6400.302267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.110 4.110 3 C -0.078 4.078 4 H 0.039 0.961 5 C -0.147 4.147 6 C -0.118 4.118 7 C 0.510 3.490 8 O -0.584 6.584 9 N -0.609 5.609 10 C 0.094 3.906 11 C -0.106 4.106 12 C -0.100 4.100 13 H 0.114 0.886 14 C 0.135 3.865 15 N -0.625 5.625 16 C -0.245 4.245 17 H 0.089 0.911 18 C -0.071 4.071 19 N -0.954 5.954 20 Si 0.981 3.019 21 H -0.273 1.273 22 H -0.299 1.299 23 H -0.271 1.271 24 C 0.196 3.804 25 C 0.118 3.882 26 H 0.069 0.931 27 H 0.057 0.943 28 H 0.039 0.961 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.038 0.962 34 H 0.057 0.943 35 H 0.100 0.900 36 H 0.126 0.874 37 H 0.114 0.886 38 H 0.059 0.941 39 H 0.099 0.901 40 H 0.112 0.888 41 H 0.043 0.957 42 H 0.032 0.968 43 H 0.242 0.758 44 H -0.004 1.004 45 H 0.000 1.000 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.646 -16.134 12.740 20.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.148 4.148 3 C -0.097 4.097 4 H 0.057 0.943 5 C -0.204 4.204 6 C -0.158 4.158 7 C 0.301 3.699 8 O -0.464 6.464 9 N -0.343 5.343 10 C -0.028 4.028 11 C -0.143 4.143 12 C -0.119 4.119 13 H 0.132 0.868 14 C 0.011 3.989 15 N -0.351 5.351 16 C -0.374 4.374 17 H 0.107 0.893 18 C -0.264 4.264 19 N -0.603 5.603 20 Si 0.809 3.191 21 H -0.199 1.199 22 H -0.226 1.226 23 H -0.196 1.196 24 C 0.070 3.930 25 C 0.013 3.987 26 H 0.087 0.913 27 H 0.076 0.924 28 H 0.058 0.942 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.102 0.898 32 H 0.088 0.912 33 H 0.057 0.943 34 H 0.076 0.924 35 H 0.119 0.881 36 H 0.144 0.856 37 H 0.132 0.868 38 H 0.078 0.922 39 H 0.117 0.883 40 H 0.130 0.870 41 H 0.061 0.939 42 H 0.049 0.951 43 H 0.052 0.948 44 H 0.014 0.986 45 H 0.018 0.982 Dipole moment (debyes) X Y Z Total from point charges 2.042 -15.586 12.613 20.154 hybrid contribution -0.612 1.292 -1.465 2.047 sum 1.430 -14.294 11.149 18.184 Atomic orbital electron populations 1.21824 0.95750 1.02116 1.01516 1.21535 0.96162 0.94020 1.03069 1.20913 0.93062 0.97350 0.98387 0.94274 1.21900 1.01330 1.00478 0.96672 1.21756 0.97320 0.90991 1.05720 1.21265 0.80377 0.93023 0.75248 1.90677 1.54961 1.48765 1.52023 1.48601 1.06171 1.07967 1.71538 1.22628 0.86607 0.91620 1.01913 1.22795 0.97659 0.92271 1.01624 1.23143 0.92262 1.00527 0.95983 0.86775 1.21590 0.91498 0.94940 0.90903 1.44540 1.15945 1.64919 1.09701 1.19489 1.01532 1.28664 0.87717 0.89286 1.25790 0.96229 1.01610 1.02778 1.70310 1.07129 1.46047 1.36843 0.85111 0.76559 0.78204 0.79238 1.19918 1.22587 1.19645 1.20740 0.89515 0.95420 0.87318 1.22265 0.94635 0.85448 0.96395 0.91268 0.92389 0.94156 0.91265 0.91494 0.89802 0.91239 0.94278 0.92376 0.88136 0.85639 0.86842 0.92231 0.88294 0.87004 0.93871 0.95060 0.94838 0.98600 0.98195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.78 9.67 71.98 0.70 -2.08 16 2 C -0.11 -2.00 5.40 30.60 0.17 -1.84 16 3 C -0.08 -2.02 2.04 -10.79 -0.02 -2.04 16 4 H 0.04 1.31 7.95 -2.39 -0.02 1.29 16 5 C -0.15 -3.80 8.69 71.98 0.63 -3.17 16 6 C -0.12 -2.94 4.17 29.85 0.12 -2.82 16 7 C 0.51 18.91 7.11 87.66 0.62 19.53 16 8 O -0.58 -27.97 13.83 -3.06 -0.04 -28.01 16 9 N -0.61 -21.12 2.99 -786.17 -2.35 -23.47 16 10 C 0.09 2.17 6.22 86.84 0.54 2.71 16 11 C -0.11 -2.08 6.34 31.95 0.20 -1.88 16 12 C -0.10 -3.09 4.33 -8.93 -0.04 -3.13 16 13 H 0.11 3.16 8.14 -2.39 -0.02 3.14 16 14 C 0.14 5.28 6.45 86.69 0.56 5.84 16 15 N -0.62 -33.53 3.38 -698.14 -2.36 -35.89 16 16 C -0.25 -14.32 10.25 84.03 0.86 -13.46 16 17 H 0.09 4.84 7.83 -2.91 -0.02 4.82 16 18 C -0.07 -4.33 5.48 84.86 0.47 -3.86 16 19 N -0.95 -63.11 10.24 21.65 0.22 -62.89 16 20 Si 0.98 48.12 29.55 68.60 2.03 50.15 16 21 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 22 H -0.30 -14.99 7.11 99.48 0.71 -14.28 16 23 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 24 C 0.20 10.85 4.91 86.52 0.43 11.27 16 25 C 0.12 4.78 3.60 45.90 0.17 4.94 16 26 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 27 H 0.06 1.02 6.56 -2.39 -0.02 1.00 16 28 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.04 1.31 5.95 -2.39 -0.01 1.30 16 34 H 0.06 1.39 6.56 -2.39 -0.02 1.37 16 35 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 36 H 0.13 2.13 7.84 -2.38 -0.02 2.11 16 37 H 0.11 1.68 7.46 -2.39 -0.02 1.66 16 38 H 0.06 1.53 7.18 -2.39 -0.02 1.51 16 39 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.11 1.64 8.08 -2.39 -0.02 1.63 16 41 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.03 1.16 6.52 -2.39 -0.02 1.15 16 43 H 0.24 15.78 8.31 -92.71 -0.77 15.01 16 44 H 0.00 -0.27 7.33 -2.39 -0.02 -0.29 16 45 H 0.00 -0.01 6.64 -2.39 -0.02 -0.03 16 Total: -1.00 -82.76 341.64 3.84 -78.92 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: 0.95 Total: 11.16 kcal Atomic # 6 Polarization: 4.64 SS G_CDS: 5.39 Total: 10.03 kcal Atomic # 7 Polarization: -117.76 SS G_CDS: -4.48 Total: -122.24 kcal Atomic # 8 Polarization: -27.97 SS G_CDS: -0.04 Total: -28.01 kcal Atomic # 14 Polarization: 48.12 SS G_CDS: 2.03 Total: 50.15 kcal Total: -82.76 3.84 -78.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187690883.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.493 kcal (2) G-P(sol) polarization free energy of solvation -82.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds