Wall clock time and date at job start Tue Mar 31 2020 03:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50699 * 120.00614 * 2 1 4 4 H 1.09000 * 109.46973 * 359.97438 * 3 2 1 5 5 C 1.53001 * 109.47018 * 119.99725 * 3 2 1 6 6 C 1.53001 * 109.46979 * 186.08962 * 5 3 2 7 7 C 1.53004 * 109.47048 * 239.99848 * 3 2 1 8 8 C 1.50702 * 109.46981 * 65.90812 * 7 3 2 9 9 O 1.21285 * 120.00046 * 358.62404 * 8 7 3 10 10 N 1.34777 * 119.99992 * 178.62301 * 8 7 3 11 11 C 1.47022 * 125.64578 * 0.02562 * 10 8 7 12 12 C 1.54324 * 107.40171 * 178.83029 * 11 10 8 13 13 C 1.55405 * 102.82477 * 337.97291 * 12 11 10 14 14 H 1.08997 * 110.89277 * 277.26920 * 13 12 11 15 15 N 1.46508 * 111.06815 * 153.48492 * 13 12 11 16 16 C 1.46493 * 120.00350 * 307.66877 * 15 13 12 17 17 C 1.36932 * 119.99548 * 127.66328 * 15 13 12 18 18 H 1.08001 * 120.00148 * 23.09258 * 17 15 13 19 19 C 1.38817 * 120.00049 * 203.08916 * 17 15 13 20 20 N 1.31614 * 119.99650 * 11.18796 * 19 17 15 21 21 Si 1.86800 * 120.00185 * 191.19543 * 19 17 15 22 22 H 1.48508 * 109.47004 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47553 * 119.99383 * 21 19 17 24 24 H 1.48500 * 109.47113 * 239.99822 * 21 19 17 25 25 C 1.47421 * 125.65018 * 179.97438 * 10 8 7 26 26 H 1.08002 * 119.99468 * 0.02562 * 1 2 3 27 27 H 1.07991 * 120.00411 * 180.02562 * 1 2 3 28 28 H 1.08009 * 119.99407 * 180.02562 * 2 1 3 29 29 H 1.08993 * 109.47069 * 306.09103 * 5 3 2 30 30 H 1.09003 * 109.47203 * 66.09364 * 5 3 2 31 31 H 1.08997 * 109.46991 * 62.56638 * 6 5 3 32 32 H 1.08997 * 109.47107 * 182.57681 * 6 5 3 33 33 H 1.09005 * 109.47169 * 302.57007 * 6 5 3 34 34 H 1.08993 * 109.46922 * 305.90724 * 7 3 2 35 35 H 1.09002 * 109.46613 * 185.90647 * 7 3 2 36 36 H 1.09009 * 109.88125 * 298.32280 * 11 10 8 37 37 H 1.08994 * 109.88607 * 59.33295 * 11 10 8 38 38 H 1.09000 * 110.72055 * 96.24304 * 12 11 10 39 39 H 1.08994 * 110.71934 * 219.52424 * 12 11 10 40 40 H 1.08995 * 109.47375 * 86.57448 * 16 15 13 41 41 H 1.09003 * 109.47123 * 206.57640 * 16 15 13 42 42 H 1.09008 * 109.47154 * 326.57618 * 16 15 13 43 43 H 0.97004 * 119.99718 * 179.97438 * 20 19 17 44 44 H 1.08998 * 110.36673 * 323.00219 * 25 10 8 45 45 H 1.09004 * 110.36437 * 85.32474 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 1 1.3554 2.1335 -0.0005 5 6 2.9432 1.3860 1.2493 6 6 3.5909 2.7699 1.3281 7 6 2.9433 1.3859 -1.2493 8 6 2.0696 1.4524 -2.4754 9 8 0.8627 1.4114 -2.3629 10 7 2.6294 1.5573 -3.6969 11 6 4.0717 1.6165 -3.9762 12 6 4.2420 1.7037 -5.5075 13 6 2.9020 1.1217 -6.0374 14 1 2.9319 0.0323 -6.0565 15 7 2.5819 1.6588 -7.3623 16 6 2.5739 3.1070 -7.5833 17 6 2.2902 0.8071 -8.3941 18 1 1.9312 -0.1901 -8.1862 19 6 2.4558 1.2254 -9.7073 20 7 3.0947 2.3468 -9.9651 21 14 1.7719 0.1967 -11.1086 22 1 1.1023 -1.0086 -10.5568 23 1 0.7892 1.0004 -11.8789 24 1 2.8810 -0.2201 -12.0039 25 6 1.8971 1.6308 -4.9742 26 1 -0.5399 0.9354 -0.0004 27 1 -0.5400 -0.9352 0.0004 28 1 1.8499 -0.9354 -0.0004 29 1 2.3312 1.2202 2.1358 30 1 3.7204 0.6236 1.1965 31 1 2.8151 3.5290 1.4268 32 1 4.2531 2.8124 2.1929 33 1 4.1661 2.9541 0.4207 34 1 3.5792 0.5024 -1.3036 35 1 3.5659 2.2792 -1.1979 36 1 4.5048 2.4984 -3.5041 37 1 4.5594 0.7174 -3.5996 38 1 4.3638 2.7397 -5.8236 39 1 5.0856 1.0972 -5.8368 40 1 3.5806 3.4420 -7.8329 41 1 1.8976 3.3455 -8.4042 42 1 2.2374 3.6110 -6.6772 43 1 3.2108 2.6389 -10.8828 44 1 1.0176 0.9877 -4.9448 45 1 1.6085 2.6602 -5.1873 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191912125.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:08:01 Heat of formation + Delta-G solvation = -0.750268 kcal Electronic energy + Delta-G solvation = -22493.878577 eV Core-core repulsion = 19319.323407 eV Total energy + Delta-G solvation = -3174.555171 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.89191 -37.85796 -36.37954 -34.78616 -32.32818 -31.70533 -30.09646 -29.48442 -27.72898 -26.06968 -25.33188 -23.32226 -22.26891 -21.17236 -19.81637 -19.29289 -18.85329 -17.04793 -16.87686 -15.97540 -15.61611 -15.09730 -14.55972 -14.33326 -14.03277 -13.81111 -13.52984 -13.35170 -13.10468 -12.72364 -12.48326 -12.44390 -12.22489 -11.95788 -11.79896 -11.70419 -11.34371 -11.18253 -10.95758 -10.83511 -10.76871 -10.55632 -10.49018 -10.43960 -10.22476 -9.92420 -9.85374 -9.62643 -9.06807 -8.58319 -8.26469 -6.81498 -5.79926 -3.25251 2.45545 2.92784 3.28393 3.35468 3.43315 3.45463 4.45044 4.59254 4.66029 4.72292 5.03707 5.04939 5.14113 5.23973 5.28760 5.32772 5.38001 5.43130 5.48793 5.55064 5.60987 5.73424 5.73794 5.79522 5.84969 5.92849 6.00550 6.02348 6.06221 6.21005 6.32814 6.40765 6.57749 6.66538 6.74797 6.81365 6.88616 6.95135 7.34969 7.65611 7.77251 7.87730 8.34574 8.47676 9.17686 9.79523 10.28357 11.26379 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.031923 B = 0.003479 C = 0.003275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.899099 B = 8047.502237 C = 8547.245141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.156 4.156 3 C -0.043 4.043 4 H 0.080 0.920 5 C -0.116 4.116 6 C -0.156 4.156 7 C -0.131 4.131 8 C 0.522 3.478 9 O -0.540 6.540 10 N -0.616 5.616 11 C 0.104 3.896 12 C -0.151 4.151 13 C 0.173 3.827 14 H 0.077 0.923 15 N -0.586 5.586 16 C 0.160 3.840 17 C -0.258 4.258 18 H 0.070 0.930 19 C 0.004 3.996 20 N -0.906 5.906 21 Si 0.907 3.093 22 H -0.277 1.277 23 H -0.289 1.289 24 H -0.290 1.290 25 C 0.086 3.914 26 H 0.095 0.905 27 H 0.089 0.911 28 H 0.101 0.899 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.020 0.980 41 H 0.060 0.940 42 H -0.004 1.004 43 H 0.253 0.747 44 H 0.070 0.930 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.106 -0.801 19.803 20.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.174 4.174 3 C -0.062 4.062 4 H 0.098 0.902 5 C -0.153 4.153 6 C -0.214 4.214 7 C -0.171 4.171 8 C 0.310 3.690 9 O -0.418 6.418 10 N -0.350 5.350 11 C -0.020 4.020 12 C -0.191 4.191 13 C 0.062 3.938 14 H 0.095 0.905 15 N -0.306 5.306 16 C 0.016 3.984 17 C -0.388 4.388 18 H 0.088 0.912 19 C -0.195 4.195 20 N -0.551 5.551 21 Si 0.737 3.263 22 H -0.202 1.202 23 H -0.215 1.215 24 H -0.217 1.217 25 C -0.039 4.039 26 H 0.114 0.886 27 H 0.108 0.892 28 H 0.119 0.881 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.108 0.892 35 H 0.111 0.889 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.038 0.962 41 H 0.079 0.921 42 H 0.015 0.985 43 H 0.063 0.937 44 H 0.088 0.912 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.447 -0.736 19.725 19.890 hybrid contribution -0.109 -0.461 -0.980 1.088 sum 2.338 -1.196 18.745 18.928 Atomic orbital electron populations 1.23693 0.95947 1.01299 0.99019 1.22648 0.96013 0.97153 1.01550 1.20136 0.96448 0.96914 0.92734 0.90153 1.21538 0.98824 0.97548 0.97396 1.21860 1.00716 0.97082 1.01702 1.21739 0.98652 1.04089 0.92571 1.20283 0.88773 0.76511 0.83396 1.90690 1.14775 1.50359 1.85933 1.48544 1.08039 1.72221 1.06240 1.22022 0.81395 1.00505 0.98090 1.23221 1.01144 1.03087 0.91683 1.21460 0.89942 0.97033 0.85377 0.90530 1.43821 1.79530 1.02625 1.04605 1.20808 0.99732 0.82170 0.95711 1.19297 1.37598 0.96827 0.85061 0.91203 1.25033 0.98979 0.97795 0.97676 1.70077 1.43349 1.23115 1.18579 0.86146 0.78308 0.79583 0.82267 1.20242 1.21544 1.21673 1.22943 0.96855 1.01748 0.82311 0.88636 0.89232 0.88115 0.91670 0.91851 0.92676 0.92759 0.92413 0.89158 0.88926 0.92251 0.92029 0.90538 0.90563 0.96182 0.92144 0.98537 0.93690 0.91150 0.91594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.99 13.23 29.01 0.38 -1.61 16 2 C -0.16 -1.80 7.80 -36.03 -0.28 -2.08 16 3 C -0.04 -0.46 1.79 -91.77 -0.16 -0.63 16 4 H 0.08 0.98 7.59 -51.93 -0.39 0.59 16 5 C -0.12 -0.94 5.37 -26.73 -0.14 -1.08 16 6 C -0.16 -1.15 9.75 37.16 0.36 -0.79 16 7 C -0.13 -1.44 4.24 -27.88 -0.12 -1.55 16 8 C 0.52 8.10 7.62 -10.98 -0.08 8.02 16 9 O -0.54 -10.14 14.44 5.55 0.08 -10.06 16 10 N -0.62 -9.80 3.33 -170.53 -0.57 -10.37 16 11 C 0.10 1.38 6.48 -3.06 -0.02 1.36 16 12 C -0.15 -2.50 6.53 -24.76 -0.16 -2.66 16 13 C 0.17 3.44 3.54 -65.65 -0.23 3.21 16 14 H 0.08 1.55 7.96 -51.93 -0.41 1.14 16 15 N -0.59 -14.30 2.96 -170.88 -0.51 -14.80 16 16 C 0.16 3.85 7.71 59.84 0.46 4.31 16 17 C -0.26 -6.97 9.61 -15.06 -0.14 -7.11 16 18 H 0.07 1.85 7.85 -52.49 -0.41 1.44 16 19 C 0.00 0.10 5.09 -17.43 -0.09 0.01 16 20 N -0.91 -25.84 10.66 55.49 0.59 -25.25 16 21 Si 0.91 21.58 29.57 -169.99 -5.03 16.56 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 C 0.09 1.62 6.49 -2.54 -0.02 1.60 16 26 H 0.10 1.23 7.83 -52.49 -0.41 0.82 16 27 H 0.09 0.99 8.06 -52.49 -0.42 0.57 16 28 H 0.10 1.06 8.06 -52.48 -0.42 0.64 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.42 6.37 -51.93 -0.33 0.09 16 34 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.09 0.87 6.30 -51.93 -0.33 0.54 16 36 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.08 1.35 6.95 -51.93 -0.36 0.99 16 39 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.02 0.51 7.64 -51.93 -0.40 0.11 16 41 H 0.06 1.60 6.70 -51.93 -0.35 1.25 16 42 H 0.00 -0.08 6.37 -51.92 -0.33 -0.41 16 43 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 44 H 0.07 1.42 8.04 -51.93 -0.42 1.00 16 45 H 0.07 1.32 6.34 -51.93 -0.33 0.99 16 LS Contribution 353.04 15.07 5.32 5.32 Total: -1.00 -30.29 353.04 -8.19 -38.48 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -7.83 Total: -0.87 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: -0.25 Total: 0.99 kcal Atomic # 7 Polarization: -49.94 SS G_CDS: -0.48 Total: -50.42 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.08 Total: -10.06 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.03 Total: 16.56 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.29 -8.19 -38.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191912125.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.732 kcal (2) G-P(sol) polarization free energy of solvation -30.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds