Wall clock time and date at job start Tue Mar 31 2020 03:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50699 * 120.00614 * 2 1 4 4 H 1.09000 * 109.46973 * 359.97438 * 3 2 1 5 5 C 1.53001 * 109.47018 * 119.99725 * 3 2 1 6 6 C 1.53001 * 109.46979 * 186.08962 * 5 3 2 7 7 C 1.53004 * 109.47048 * 239.99848 * 3 2 1 8 8 C 1.50702 * 109.46981 * 65.90812 * 7 3 2 9 9 O 1.21285 * 120.00046 * 358.62404 * 8 7 3 10 10 N 1.34777 * 119.99992 * 178.62301 * 8 7 3 11 11 C 1.47022 * 125.64578 * 0.02562 * 10 8 7 12 12 C 1.54324 * 107.40171 * 178.83029 * 11 10 8 13 13 C 1.55405 * 102.82477 * 337.97291 * 12 11 10 14 14 H 1.08997 * 110.89277 * 277.26920 * 13 12 11 15 15 N 1.46508 * 111.06815 * 153.48492 * 13 12 11 16 16 C 1.46493 * 120.00350 * 307.66877 * 15 13 12 17 17 C 1.36932 * 119.99548 * 127.66328 * 15 13 12 18 18 H 1.08001 * 120.00148 * 23.09258 * 17 15 13 19 19 C 1.38817 * 120.00049 * 203.08916 * 17 15 13 20 20 N 1.31614 * 119.99650 * 11.18796 * 19 17 15 21 21 Si 1.86800 * 120.00185 * 191.19543 * 19 17 15 22 22 H 1.48508 * 109.47004 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47553 * 119.99383 * 21 19 17 24 24 H 1.48500 * 109.47113 * 239.99822 * 21 19 17 25 25 C 1.47421 * 125.65018 * 179.97438 * 10 8 7 26 26 H 1.08002 * 119.99468 * 0.02562 * 1 2 3 27 27 H 1.07991 * 120.00411 * 180.02562 * 1 2 3 28 28 H 1.08009 * 119.99407 * 180.02562 * 2 1 3 29 29 H 1.08993 * 109.47069 * 306.09103 * 5 3 2 30 30 H 1.09003 * 109.47203 * 66.09364 * 5 3 2 31 31 H 1.08997 * 109.46991 * 62.56638 * 6 5 3 32 32 H 1.08997 * 109.47107 * 182.57681 * 6 5 3 33 33 H 1.09005 * 109.47169 * 302.57007 * 6 5 3 34 34 H 1.08993 * 109.46922 * 305.90724 * 7 3 2 35 35 H 1.09002 * 109.46613 * 185.90647 * 7 3 2 36 36 H 1.09009 * 109.88125 * 298.32280 * 11 10 8 37 37 H 1.08994 * 109.88607 * 59.33295 * 11 10 8 38 38 H 1.09000 * 110.72055 * 96.24304 * 12 11 10 39 39 H 1.08994 * 110.71934 * 219.52424 * 12 11 10 40 40 H 1.08995 * 109.47375 * 86.57448 * 16 15 13 41 41 H 1.09003 * 109.47123 * 206.57640 * 16 15 13 42 42 H 1.09008 * 109.47154 * 326.57618 * 16 15 13 43 43 H 0.97004 * 119.99718 * 179.97438 * 20 19 17 44 44 H 1.08998 * 110.36673 * 323.00219 * 25 10 8 45 45 H 1.09004 * 110.36437 * 85.32474 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 1 1.3554 2.1335 -0.0005 5 6 2.9432 1.3860 1.2493 6 6 3.5909 2.7699 1.3281 7 6 2.9433 1.3859 -1.2493 8 6 2.0696 1.4524 -2.4754 9 8 0.8627 1.4114 -2.3629 10 7 2.6294 1.5573 -3.6969 11 6 4.0717 1.6165 -3.9762 12 6 4.2420 1.7037 -5.5075 13 6 2.9020 1.1217 -6.0374 14 1 2.9319 0.0323 -6.0565 15 7 2.5819 1.6588 -7.3623 16 6 2.5739 3.1070 -7.5833 17 6 2.2902 0.8071 -8.3941 18 1 1.9312 -0.1901 -8.1862 19 6 2.4558 1.2254 -9.7073 20 7 3.0947 2.3468 -9.9651 21 14 1.7719 0.1967 -11.1086 22 1 1.1023 -1.0086 -10.5568 23 1 0.7892 1.0004 -11.8789 24 1 2.8810 -0.2201 -12.0039 25 6 1.8971 1.6308 -4.9742 26 1 -0.5399 0.9354 -0.0004 27 1 -0.5400 -0.9352 0.0004 28 1 1.8499 -0.9354 -0.0004 29 1 2.3312 1.2202 2.1358 30 1 3.7204 0.6236 1.1965 31 1 2.8151 3.5290 1.4268 32 1 4.2531 2.8124 2.1929 33 1 4.1661 2.9541 0.4207 34 1 3.5792 0.5024 -1.3036 35 1 3.5659 2.2792 -1.1979 36 1 4.5048 2.4984 -3.5041 37 1 4.5594 0.7174 -3.5996 38 1 4.3638 2.7397 -5.8236 39 1 5.0856 1.0972 -5.8368 40 1 3.5806 3.4420 -7.8329 41 1 1.8976 3.3455 -8.4042 42 1 2.2374 3.6110 -6.6772 43 1 3.2108 2.6389 -10.8828 44 1 1.0176 0.9877 -4.9448 45 1 1.6085 2.6602 -5.1873 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001191912125.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:08:00 Heat of formation + Delta-G solvation = -17.480771 kcal Electronic energy + Delta-G solvation = -22494.604066 eV Core-core repulsion = 19319.323407 eV Total energy + Delta-G solvation = -3175.280660 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.13400 -39.17163 -37.43905 -36.50113 -33.53238 -33.05754 -31.50309 -30.62048 -29.11179 -28.07499 -26.30545 -24.85497 -23.70931 -21.93938 -20.98868 -20.70988 -19.96650 -18.95531 -18.07827 -17.52868 -16.69763 -16.58293 -15.89076 -15.48868 -15.12077 -15.06752 -14.86322 -14.62242 -14.40237 -14.27700 -13.92012 -13.53837 -13.44526 -13.12431 -12.97519 -12.85554 -12.74123 -12.50558 -12.42917 -12.36792 -12.13726 -12.07427 -11.87212 -11.85158 -11.54088 -11.45104 -11.30457 -10.84453 -10.63771 -10.03064 -9.58192 -8.79025 -7.87438 -5.34348 1.45685 1.47836 1.53379 1.57646 1.74658 2.04747 2.50413 3.26935 3.54780 3.61168 3.83173 3.92471 3.95176 4.07801 4.20565 4.35297 4.36191 4.43237 4.46617 4.51904 4.57168 4.66886 4.70057 4.76764 4.82070 4.91814 4.98635 5.03249 5.08131 5.16622 5.22462 5.24337 5.28561 5.32168 5.38781 5.43383 5.55685 5.60779 5.69541 5.82810 6.05847 6.31141 6.66504 7.12214 7.26041 7.82387 8.26573 9.17501 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.031923 B = 0.003479 C = 0.003275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.899099 B = 8047.502237 C = 8547.245141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.153 4.153 3 C -0.043 4.043 4 H 0.058 0.942 5 C -0.108 4.108 6 C -0.157 4.157 7 C -0.120 4.120 8 C 0.515 3.485 9 O -0.580 6.580 10 N -0.618 5.618 11 C 0.110 3.890 12 C -0.142 4.142 13 C 0.165 3.835 14 H 0.071 0.929 15 N -0.603 5.603 16 C 0.179 3.821 17 C -0.268 4.268 18 H 0.069 0.931 19 C -0.048 4.048 20 N -0.935 5.935 21 Si 0.969 3.031 22 H -0.269 1.269 23 H -0.292 1.292 24 H -0.289 1.289 25 C 0.099 3.901 26 H 0.080 0.920 27 H 0.096 0.904 28 H 0.116 0.884 29 H 0.064 0.936 30 H 0.079 0.921 31 H 0.046 0.954 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.116 0.884 35 H 0.117 0.883 36 H 0.090 0.910 37 H 0.094 0.906 38 H 0.064 0.936 39 H 0.084 0.916 40 H 0.004 0.996 41 H 0.029 0.971 42 H 0.019 0.981 43 H 0.250 0.750 44 H 0.047 0.953 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.987 -1.596 21.669 22.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.171 4.171 3 C -0.062 4.062 4 H 0.076 0.924 5 C -0.145 4.145 6 C -0.214 4.214 7 C -0.159 4.159 8 C 0.306 3.694 9 O -0.460 6.460 10 N -0.352 5.352 11 C -0.012 4.012 12 C -0.182 4.182 13 C 0.056 3.944 14 H 0.089 0.911 15 N -0.324 5.324 16 C 0.034 3.966 17 C -0.398 4.398 18 H 0.087 0.913 19 C -0.243 4.243 20 N -0.581 5.581 21 Si 0.797 3.203 22 H -0.193 1.193 23 H -0.219 1.219 24 H -0.216 1.216 25 C -0.027 4.027 26 H 0.098 0.902 27 H 0.114 0.886 28 H 0.134 0.866 29 H 0.083 0.917 30 H 0.098 0.902 31 H 0.065 0.935 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.134 0.866 35 H 0.135 0.865 36 H 0.108 0.892 37 H 0.112 0.888 38 H 0.083 0.917 39 H 0.102 0.898 40 H 0.022 0.978 41 H 0.047 0.953 42 H 0.038 0.962 43 H 0.059 0.941 44 H 0.066 0.934 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.351 -1.544 21.639 22.126 hybrid contribution -0.736 -0.221 -1.498 1.684 sum 3.616 -1.765 20.141 20.539 Atomic orbital electron populations 1.23731 0.96656 1.00984 1.00752 1.22933 0.95890 0.98322 0.99981 1.20146 0.96463 0.95540 0.94065 0.92387 1.21485 0.98692 0.98582 0.95780 1.21872 1.00687 0.96264 1.02589 1.21797 0.98086 1.06396 0.89661 1.21207 0.88881 0.75195 0.84160 1.90685 1.16897 1.51965 1.86456 1.48636 1.08913 1.72346 1.05325 1.22152 0.79879 1.03600 0.95580 1.23067 0.98919 1.02041 0.94141 1.21581 0.92320 0.96830 0.83666 0.91077 1.43974 1.80234 1.02428 1.05778 1.20492 0.97951 0.82617 0.95500 1.19580 1.37082 0.97049 0.86091 0.91313 1.25742 0.99707 0.99030 0.99817 1.70216 1.44681 1.24561 1.18636 0.85180 0.77443 0.78321 0.79328 1.19342 1.21878 1.21575 1.22516 0.96132 1.00089 0.83970 0.90185 0.88573 0.86563 0.91695 0.90218 0.93498 0.91525 0.91808 0.86579 0.86458 0.89151 0.88804 0.91748 0.89756 0.97810 0.95260 0.96236 0.94112 0.93400 0.93112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.52 13.23 67.78 0.90 -3.62 16 2 C -0.15 -3.30 7.80 25.65 0.20 -3.10 16 3 C -0.04 -0.82 1.79 -11.54 -0.02 -0.84 16 4 H 0.06 1.37 7.59 -2.39 -0.02 1.35 16 5 C -0.11 -1.40 5.37 30.59 0.16 -1.24 16 6 C -0.16 -1.80 9.75 71.98 0.70 -1.10 16 7 C -0.12 -2.19 4.24 29.85 0.13 -2.06 16 8 C 0.51 14.96 7.62 87.66 0.67 15.63 16 9 O -0.58 -21.69 14.44 -3.04 -0.04 -21.73 16 10 N -0.62 -18.32 3.33 -811.81 -2.70 -21.02 16 11 C 0.11 2.50 6.48 86.73 0.56 3.06 16 12 C -0.14 -4.40 6.53 31.87 0.21 -4.19 16 13 C 0.17 6.51 3.54 46.47 0.16 6.67 16 14 H 0.07 2.86 7.96 -2.39 -0.02 2.84 16 15 N -0.60 -29.79 2.96 -694.55 -2.06 -31.85 16 16 C 0.18 8.79 7.71 127.77 0.99 9.78 16 17 C -0.27 -14.63 9.61 84.04 0.81 -13.82 16 18 H 0.07 3.68 7.85 -2.91 -0.02 3.66 16 19 C -0.05 -2.64 5.09 84.86 0.43 -2.20 16 20 N -0.93 -54.32 10.66 21.65 0.23 -54.09 16 21 Si 0.97 44.84 29.57 68.60 2.03 46.87 16 22 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 23 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 24 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 25 C 0.10 3.70 6.49 86.85 0.56 4.26 16 26 H 0.08 2.17 7.83 -2.91 -0.02 2.14 16 27 H 0.10 2.14 8.06 -2.92 -0.02 2.11 16 28 H 0.12 2.13 8.06 -2.91 -0.02 2.10 16 29 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.06 0.66 6.37 -2.38 -0.02 0.64 16 34 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.12 1.63 6.30 -2.39 -0.02 1.61 16 36 H 0.09 1.59 8.14 -2.38 -0.02 1.57 16 37 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.06 2.17 6.95 -2.39 -0.02 2.15 16 39 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 40 H 0.00 0.19 7.64 -2.39 -0.02 0.17 16 41 H 0.03 1.58 6.70 -2.39 -0.02 1.57 16 42 H 0.02 0.84 6.37 -2.38 -0.02 0.83 16 43 H 0.25 14.06 8.31 -92.71 -0.77 13.29 16 44 H 0.05 1.98 8.04 -2.39 -0.02 1.96 16 45 H 0.05 2.04 6.34 -2.38 -0.02 2.03 16 Total: -1.00 -67.54 353.04 4.85 -62.69 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: 0.93 Total: 11.91 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: 6.46 Total: 7.22 kcal Atomic # 7 Polarization: -102.43 SS G_CDS: -4.53 Total: -106.96 kcal Atomic # 8 Polarization: -21.69 SS G_CDS: -0.04 Total: -21.73 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -67.54 4.85 -62.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191912125.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.209 kcal (2) G-P(sol) polarization free energy of solvation -67.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds