Wall clock time and date at job start Tue Mar 31 2020 03:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50693 * 119.99678 * 2 1 4 4 H 1.08996 * 109.47862 * 0.02562 * 3 2 1 5 5 C 1.52998 * 109.47404 * 239.99704 * 3 2 1 6 6 C 1.53005 * 109.46871 * 65.00272 * 5 3 2 7 7 C 1.53011 * 109.46717 * 120.00271 * 3 2 1 8 8 C 1.50701 * 109.47003 * 294.99687 * 7 3 2 9 9 O 1.21284 * 119.99890 * 359.97438 * 8 7 3 10 10 N 1.34771 * 119.99951 * 180.02562 * 8 7 3 11 11 C 1.46931 * 120.63145 * 359.97321 * 10 8 7 12 12 C 1.53191 * 108.76527 * 126.40558 * 11 10 8 13 13 C 1.53046 * 109.30997 * 54.65907 * 12 11 10 14 14 C 1.53039 * 109.52798 * 298.61471 * 13 12 11 15 15 H 1.09000 * 109.49863 * 301.42271 * 14 13 12 16 16 N 1.46495 * 109.49863 * 181.35646 * 14 13 12 17 17 C 1.36933 * 120.00178 * 84.99859 * 16 14 13 18 18 H 1.08001 * 120.00307 * 0.02562 * 17 16 14 19 19 C 1.38810 * 120.00181 * 179.97438 * 17 16 14 20 20 N 1.31620 * 120.00027 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 120.00075 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46860 * 90.00078 * 21 19 17 23 23 H 1.48500 * 109.46823 * 209.99970 * 21 19 17 24 24 H 1.48493 * 109.47231 * 330.00303 * 21 19 17 25 25 C 1.46919 * 120.63242 * 180.02562 * 10 8 7 26 26 H 1.08005 * 120.00352 * 179.97438 * 1 2 3 27 27 H 1.08004 * 120.00145 * 359.97438 * 1 2 3 28 28 H 1.07993 * 119.99737 * 180.02562 * 2 1 3 29 29 H 1.08994 * 109.47537 * 185.00575 * 5 3 2 30 30 H 1.09003 * 109.47308 * 305.01035 * 5 3 2 31 31 H 1.08994 * 109.47287 * 300.00455 * 6 5 3 32 32 H 1.08998 * 109.46948 * 60.00094 * 6 5 3 33 33 H 1.08995 * 109.47194 * 180.02562 * 6 5 3 34 34 H 1.09000 * 109.46879 * 174.99858 * 7 3 2 35 35 H 1.08997 * 109.46879 * 55.00133 * 7 3 2 36 36 H 1.08998 * 109.58959 * 246.20295 * 11 10 8 37 37 H 1.09003 * 109.58181 * 6.48778 * 11 10 8 38 38 H 1.08998 * 109.50939 * 294.70294 * 12 11 10 39 39 H 1.09003 * 109.48831 * 174.59930 * 12 11 10 40 40 H 1.09002 * 109.46115 * 178.59924 * 13 12 11 41 41 H 1.09004 * 109.45806 * 58.62809 * 13 12 11 42 42 H 0.96998 * 119.99986 * 264.99650 * 16 14 13 43 43 H 0.97003 * 120.00129 * 179.97438 * 20 19 17 44 44 H 1.08997 * 109.59005 * 113.79701 * 25 10 8 45 45 H 1.09002 * 109.70256 * 353.43937 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 1 1.3552 2.1336 0.0005 5 6 2.9431 1.3862 -1.2492 6 6 2.0564 1.4308 -2.4953 7 6 2.9431 1.3861 1.2493 8 6 2.0697 1.4299 2.4767 9 8 0.8626 1.3999 2.3633 10 7 2.6300 1.5035 3.7002 11 6 4.0908 1.5413 3.8535 12 6 4.4661 2.7611 4.7008 13 6 3.6965 2.7151 6.0229 14 6 2.1931 2.7666 5.7418 15 1 1.9567 3.6778 5.1923 16 7 1.4580 2.7552 7.0089 17 6 1.2385 3.9263 7.6837 18 1 1.6069 4.8585 7.2816 19 6 0.5415 3.9155 8.8841 20 7 0.0912 2.7797 9.3735 21 14 0.2427 5.5131 9.8050 22 1 -1.0384 6.1129 9.3528 23 1 0.1734 5.2385 11.2628 24 1 1.3553 6.4577 9.5315 25 6 1.7919 1.5465 4.9060 26 1 -0.5401 -0.9353 -0.0004 27 1 -0.5400 0.9353 0.0004 28 1 1.8499 -0.9353 -0.0004 29 1 3.5540 2.2878 -1.2055 30 1 3.5905 0.5105 -1.2952 31 1 1.4455 0.5292 -2.5390 32 1 1.4089 2.3064 -2.4493 33 1 2.6830 1.4881 -3.3852 34 1 3.5540 2.2877 1.2057 35 1 3.5906 0.5104 1.2951 36 1 4.4297 0.6325 4.3509 37 1 4.5594 1.6172 2.8723 38 1 4.2081 3.6724 4.1612 39 1 5.5372 2.7481 4.9027 40 1 3.9804 3.5689 6.6382 41 1 3.9359 1.7918 6.5504 42 1 1.1267 1.9180 7.3699 43 1 -0.3956 2.7721 10.2125 44 1 1.9436 0.6381 5.4891 45 1 0.7427 1.6272 4.6216 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209182763.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:07:01 Heat of formation + Delta-G solvation = -22.348110 kcal Electronic energy + Delta-G solvation = -22457.293087 eV Core-core repulsion = 19281.801364 eV Total energy + Delta-G solvation = -3175.491723 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.08682 -37.77569 -36.41439 -34.46178 -32.22653 -31.80975 -31.29765 -30.42597 -28.22309 -25.60210 -24.41292 -23.38104 -22.01761 -21.75901 -20.12477 -19.62713 -18.64682 -17.17171 -16.90419 -15.66565 -15.63509 -14.97998 -14.58315 -14.50530 -14.03613 -14.00469 -13.85378 -13.57628 -13.19941 -13.05623 -12.87505 -12.59611 -12.30739 -12.19154 -11.88818 -11.44397 -11.33081 -11.09845 -10.93016 -10.91160 -10.88357 -10.62763 -10.56730 -10.38726 -10.33236 -10.06430 -9.73376 -9.57093 -9.05435 -8.90380 -8.31638 -6.97951 -5.77154 -3.06656 2.46572 2.87908 3.19867 3.43883 3.48991 3.50361 4.50291 4.59237 4.64833 4.73320 4.93953 5.05438 5.11180 5.17703 5.26688 5.32469 5.35452 5.36076 5.52211 5.56367 5.59434 5.67291 5.74868 5.77476 5.79571 5.80676 5.85221 5.98058 6.06486 6.07447 6.18507 6.19376 6.27749 6.40990 6.57310 6.73866 6.76921 6.90916 6.96041 7.06472 7.67446 7.69658 8.40190 8.44579 9.52006 10.07785 10.42831 11.45406 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.026531 B = 0.003520 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.129055 B = 7951.651398 C = 8385.855676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.153 4.153 3 C -0.045 4.045 4 H 0.081 0.919 5 C -0.115 4.115 6 C -0.151 4.151 7 C -0.132 4.132 8 C 0.510 3.490 9 O -0.534 6.534 10 N -0.609 5.609 11 C 0.108 3.892 12 C -0.133 4.133 13 C -0.137 4.137 14 C 0.169 3.831 15 H 0.049 0.951 16 N -0.722 5.722 17 C -0.238 4.238 18 H 0.070 0.930 19 C -0.013 4.013 20 N -0.932 5.932 21 Si 0.907 3.093 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.282 1.282 25 C 0.107 3.893 26 H 0.089 0.911 27 H 0.096 0.904 28 H 0.099 0.901 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.053 0.947 33 H 0.051 0.949 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.066 0.934 37 H 0.078 0.922 38 H 0.062 0.938 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.056 0.944 42 H 0.384 0.616 43 H 0.255 0.745 44 H 0.062 0.938 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.144 -5.033 -20.310 23.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.171 4.171 3 C -0.064 4.064 4 H 0.099 0.901 5 C -0.153 4.153 6 C -0.208 4.208 7 C -0.172 4.172 8 C 0.298 3.702 9 O -0.410 6.410 10 N -0.343 5.343 11 C -0.015 4.015 12 C -0.172 4.172 13 C -0.178 4.178 14 C 0.058 3.942 15 H 0.067 0.933 16 N -0.363 5.363 17 C -0.369 4.369 18 H 0.088 0.912 19 C -0.209 4.209 20 N -0.580 5.580 21 Si 0.738 3.262 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.208 1.208 25 C -0.016 4.016 26 H 0.107 0.893 27 H 0.114 0.886 28 H 0.118 0.882 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.110 0.890 35 H 0.108 0.892 36 H 0.084 0.916 37 H 0.097 0.903 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.075 0.925 42 H 0.218 0.782 43 H 0.065 0.935 44 H 0.080 0.920 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 9.455 -4.875 -20.289 22.909 hybrid contribution -0.118 0.537 0.957 1.104 sum 9.338 -4.337 -19.332 21.903 Atomic orbital electron populations 1.23702 0.95948 1.01320 0.98941 1.22591 0.95977 0.96963 1.01568 1.20168 0.96608 0.97149 0.92458 0.90051 1.21537 0.97850 1.01831 0.94083 1.21758 0.99830 1.02192 0.97057 1.21734 0.98719 1.03878 0.92900 1.20600 0.89033 0.76309 0.84303 1.90704 1.14756 1.49470 1.86097 1.48143 1.06946 1.72922 1.06253 1.21742 0.80228 0.99034 1.00474 1.21934 0.99986 0.97613 0.97693 1.22278 0.98035 1.02216 0.95231 1.20481 0.90363 0.95368 0.88014 0.93332 1.42314 1.65150 1.07914 1.20874 1.19205 1.29219 0.86884 1.01638 0.91189 1.24749 1.00972 0.96906 0.98238 1.69663 1.42607 1.24205 1.21550 0.86187 0.78025 0.82846 0.79113 1.21673 1.21764 1.20767 1.21947 0.96090 0.98991 0.84552 0.89301 0.88585 0.88250 0.91868 0.91935 0.92408 0.92779 0.93027 0.88973 0.89171 0.91581 0.90329 0.91904 0.91431 0.91635 0.92530 0.78216 0.93467 0.91997 0.89006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.96 13.22 29.01 0.38 -1.58 16 2 C -0.15 -1.70 6.76 -36.03 -0.24 -1.94 16 3 C -0.05 -0.46 1.82 -91.77 -0.17 -0.63 16 4 H 0.08 0.98 7.60 -51.93 -0.39 0.59 16 5 C -0.12 -0.90 5.39 -26.73 -0.14 -1.04 16 6 C -0.15 -1.16 9.73 37.16 0.36 -0.80 16 7 C -0.13 -1.34 3.51 -27.88 -0.10 -1.44 16 8 C 0.51 7.52 7.45 -10.99 -0.08 7.44 16 9 O -0.53 -9.83 13.58 5.55 0.08 -9.75 16 10 N -0.61 -8.95 2.97 -172.74 -0.51 -9.47 16 11 C 0.11 1.22 6.34 -3.71 -0.02 1.20 16 12 C -0.13 -1.68 6.08 -26.61 -0.16 -1.84 16 13 C -0.14 -2.35 5.47 -26.69 -0.15 -2.49 16 14 C 0.17 3.40 2.92 -67.79 -0.20 3.20 16 15 H 0.05 1.05 8.08 -51.93 -0.42 0.63 16 16 N -0.72 -18.22 5.13 -53.29 -0.27 -18.49 16 17 C -0.24 -6.65 9.93 -15.06 -0.15 -6.80 16 18 H 0.07 1.91 7.83 -52.49 -0.41 1.49 16 19 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 20 N -0.93 -28.31 13.06 55.49 0.72 -27.58 16 21 Si 0.91 22.54 29.55 -169.99 -5.02 17.52 16 22 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 23 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 24 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 25 C 0.11 1.94 5.90 -3.69 -0.02 1.92 16 26 H 0.09 0.98 8.06 -52.48 -0.42 0.55 16 27 H 0.10 1.25 7.83 -52.48 -0.41 0.84 16 28 H 0.10 1.00 8.06 -52.49 -0.42 0.58 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.47 7.38 -51.93 -0.38 0.08 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.09 0.78 7.69 -51.93 -0.40 0.38 16 35 H 0.09 0.75 7.94 -51.93 -0.41 0.34 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.08 0.65 5.93 -51.93 -0.31 0.35 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.38 10.28 7.80 -40.82 -0.32 9.97 16 43 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 44 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.09 1.89 7.01 -51.93 -0.36 1.53 16 LS Contribution 356.57 15.07 5.37 5.37 Total: -1.00 -31.83 356.57 -8.45 -40.28 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: -8.03 Total: 7.39 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: -0.79 Total: -5.26 kcal Atomic # 7 Polarization: -55.48 SS G_CDS: -0.06 Total: -55.55 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.08 Total: -9.75 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.83 -8.45 -40.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209182763.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.931 kcal (2) G-P(sol) polarization free energy of solvation -31.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds