Wall clock time and date at job start Tue Mar 31 2020 03:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50693 * 119.99678 * 2 1 4 4 H 1.08996 * 109.47862 * 0.02562 * 3 2 1 5 5 C 1.52998 * 109.47404 * 239.99704 * 3 2 1 6 6 C 1.53005 * 109.46871 * 65.00272 * 5 3 2 7 7 C 1.53011 * 109.46717 * 120.00271 * 3 2 1 8 8 C 1.50701 * 109.47003 * 294.99687 * 7 3 2 9 9 O 1.21284 * 119.99890 * 359.97438 * 8 7 3 10 10 N 1.34771 * 119.99951 * 180.02562 * 8 7 3 11 11 C 1.46931 * 120.63145 * 359.97321 * 10 8 7 12 12 C 1.53191 * 108.76527 * 126.40558 * 11 10 8 13 13 C 1.53046 * 109.30997 * 54.65907 * 12 11 10 14 14 C 1.53039 * 109.52798 * 298.61471 * 13 12 11 15 15 H 1.09000 * 109.49863 * 301.42271 * 14 13 12 16 16 N 1.46495 * 109.49863 * 181.35646 * 14 13 12 17 17 C 1.36933 * 120.00178 * 84.99859 * 16 14 13 18 18 H 1.08001 * 120.00307 * 0.02562 * 17 16 14 19 19 C 1.38810 * 120.00181 * 179.97438 * 17 16 14 20 20 N 1.31620 * 120.00027 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 120.00075 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46860 * 90.00078 * 21 19 17 23 23 H 1.48500 * 109.46823 * 209.99970 * 21 19 17 24 24 H 1.48493 * 109.47231 * 330.00303 * 21 19 17 25 25 C 1.46919 * 120.63242 * 180.02562 * 10 8 7 26 26 H 1.08005 * 120.00352 * 179.97438 * 1 2 3 27 27 H 1.08004 * 120.00145 * 359.97438 * 1 2 3 28 28 H 1.07993 * 119.99737 * 180.02562 * 2 1 3 29 29 H 1.08994 * 109.47537 * 185.00575 * 5 3 2 30 30 H 1.09003 * 109.47308 * 305.01035 * 5 3 2 31 31 H 1.08994 * 109.47287 * 300.00455 * 6 5 3 32 32 H 1.08998 * 109.46948 * 60.00094 * 6 5 3 33 33 H 1.08995 * 109.47194 * 180.02562 * 6 5 3 34 34 H 1.09000 * 109.46879 * 174.99858 * 7 3 2 35 35 H 1.08997 * 109.46879 * 55.00133 * 7 3 2 36 36 H 1.08998 * 109.58959 * 246.20295 * 11 10 8 37 37 H 1.09003 * 109.58181 * 6.48778 * 11 10 8 38 38 H 1.08998 * 109.50939 * 294.70294 * 12 11 10 39 39 H 1.09003 * 109.48831 * 174.59930 * 12 11 10 40 40 H 1.09002 * 109.46115 * 178.59924 * 13 12 11 41 41 H 1.09004 * 109.45806 * 58.62809 * 13 12 11 42 42 H 0.96998 * 119.99986 * 264.99650 * 16 14 13 43 43 H 0.97003 * 120.00129 * 179.97438 * 20 19 17 44 44 H 1.08997 * 109.59005 * 113.79701 * 25 10 8 45 45 H 1.09002 * 109.70256 * 353.43937 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 1 1.3552 2.1336 0.0005 5 6 2.9431 1.3862 -1.2492 6 6 2.0564 1.4308 -2.4953 7 6 2.9431 1.3861 1.2493 8 6 2.0697 1.4299 2.4767 9 8 0.8626 1.3999 2.3633 10 7 2.6300 1.5035 3.7002 11 6 4.0908 1.5413 3.8535 12 6 4.4661 2.7611 4.7008 13 6 3.6965 2.7151 6.0229 14 6 2.1931 2.7666 5.7418 15 1 1.9567 3.6778 5.1923 16 7 1.4580 2.7552 7.0089 17 6 1.2385 3.9263 7.6837 18 1 1.6069 4.8585 7.2816 19 6 0.5415 3.9155 8.8841 20 7 0.0912 2.7797 9.3735 21 14 0.2427 5.5131 9.8050 22 1 -1.0384 6.1129 9.3528 23 1 0.1734 5.2385 11.2628 24 1 1.3553 6.4577 9.5315 25 6 1.7919 1.5465 4.9060 26 1 -0.5401 -0.9353 -0.0004 27 1 -0.5400 0.9353 0.0004 28 1 1.8499 -0.9353 -0.0004 29 1 3.5540 2.2878 -1.2055 30 1 3.5905 0.5105 -1.2952 31 1 1.4455 0.5292 -2.5390 32 1 1.4089 2.3064 -2.4493 33 1 2.6830 1.4881 -3.3852 34 1 3.5540 2.2877 1.2057 35 1 3.5906 0.5104 1.2951 36 1 4.4297 0.6325 4.3509 37 1 4.5594 1.6172 2.8723 38 1 4.2081 3.6724 4.1612 39 1 5.5372 2.7481 4.9027 40 1 3.9804 3.5689 6.6382 41 1 3.9359 1.7918 6.5504 42 1 1.1267 1.9180 7.3699 43 1 -0.3956 2.7721 10.2125 44 1 1.9436 0.6381 5.4891 45 1 0.7427 1.6272 4.6216 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001209182763.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:07:00 Heat of formation + Delta-G solvation = -41.764341 kcal Electronic energy + Delta-G solvation = -22458.135038 eV Core-core repulsion = 19281.801364 eV Total energy + Delta-G solvation = -3176.333674 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.25305 -38.98194 -37.42168 -36.17834 -33.87345 -32.74449 -32.56400 -31.51605 -29.81593 -26.69141 -26.02003 -24.73986 -23.35149 -22.50005 -21.50995 -20.57496 -19.87071 -19.12043 -18.03856 -16.87359 -16.82121 -16.46141 -15.80940 -15.62495 -15.34863 -15.23762 -15.05162 -14.84101 -14.58398 -14.20395 -14.14198 -13.69397 -13.61255 -12.99950 -12.94766 -12.88907 -12.80314 -12.34975 -12.22739 -12.14997 -12.03707 -12.00610 -11.83539 -11.70091 -11.67069 -11.56623 -11.32294 -10.92810 -10.72816 -10.00059 -9.58272 -9.04407 -7.97614 -5.27350 1.44456 1.46978 1.54971 1.56186 1.76356 2.04774 2.54803 3.35294 3.59861 3.80751 3.87515 3.94317 4.03181 4.11548 4.15789 4.31301 4.37512 4.39779 4.43557 4.49626 4.58258 4.64298 4.68769 4.79477 4.82747 4.87204 4.94329 5.03895 5.08137 5.09771 5.11184 5.19422 5.22540 5.41175 5.43006 5.43921 5.50534 5.55345 5.61188 5.85070 6.08929 6.24194 6.55884 7.29380 7.30570 8.02990 8.27181 9.25831 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.026531 B = 0.003520 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.129055 B = 7951.651398 C = 8385.855676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.145 4.145 3 C -0.046 4.046 4 H 0.053 0.947 5 C -0.108 4.108 6 C -0.153 4.153 7 C -0.122 4.122 8 C 0.500 3.500 9 O -0.581 6.581 10 N -0.609 5.609 11 C 0.105 3.895 12 C -0.124 4.124 13 C -0.128 4.128 14 C 0.167 3.833 15 H 0.029 0.971 16 N -0.737 5.737 17 C -0.240 4.240 18 H 0.073 0.927 19 C -0.075 4.075 20 N -0.969 5.969 21 Si 0.974 3.026 22 H -0.289 1.289 23 H -0.293 1.293 24 H -0.267 1.267 25 C 0.121 3.879 26 H 0.094 0.906 27 H 0.075 0.925 28 H 0.118 0.882 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.048 0.952 32 H 0.043 0.957 33 H 0.066 0.934 34 H 0.121 0.879 35 H 0.123 0.877 36 H 0.080 0.920 37 H 0.124 0.876 38 H 0.062 0.938 39 H 0.102 0.898 40 H 0.043 0.957 41 H 0.054 0.946 42 H 0.372 0.628 43 H 0.252 0.748 44 H 0.062 0.938 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.551 -4.916 -22.082 26.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.163 4.163 3 C -0.065 4.065 4 H 0.072 0.928 5 C -0.145 4.145 6 C -0.211 4.211 7 C -0.162 4.162 8 C 0.290 3.710 9 O -0.460 6.460 10 N -0.343 5.343 11 C -0.016 4.016 12 C -0.163 4.163 13 C -0.168 4.168 14 C 0.058 3.942 15 H 0.047 0.953 16 N -0.377 5.377 17 C -0.372 4.372 18 H 0.091 0.909 19 C -0.267 4.267 20 N -0.620 5.620 21 Si 0.802 3.198 22 H -0.217 1.217 23 H -0.219 1.219 24 H -0.192 1.192 25 C -0.004 4.004 26 H 0.112 0.888 27 H 0.094 0.906 28 H 0.135 0.865 29 H 0.097 0.903 30 H 0.099 0.901 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.085 0.915 34 H 0.139 0.861 35 H 0.141 0.859 36 H 0.099 0.901 37 H 0.142 0.858 38 H 0.081 0.919 39 H 0.120 0.880 40 H 0.062 0.938 41 H 0.073 0.927 42 H 0.204 0.796 43 H 0.060 0.940 44 H 0.080 0.920 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 12.928 -4.742 -22.114 26.051 hybrid contribution -1.180 0.490 1.439 1.924 sum 11.748 -4.252 -20.675 24.157 Atomic orbital electron populations 1.23687 0.96807 1.00690 1.01291 1.22883 0.95691 0.98258 0.99427 1.20190 0.96653 0.95532 0.94152 0.92803 1.21505 0.97435 1.03432 0.92143 1.21775 0.99958 1.01331 0.98003 1.21810 0.98106 1.06707 0.89528 1.21598 0.89108 0.74934 0.85350 1.90701 1.17214 1.51370 1.86737 1.48254 1.08279 1.72718 1.05006 1.22078 0.77745 0.98892 1.02913 1.21898 1.01163 0.98431 0.94801 1.22072 0.95704 1.01143 0.97921 1.20645 0.92094 0.95406 0.86026 0.95313 1.42512 1.66067 1.06693 1.22424 1.19548 1.28124 0.87807 1.01672 0.90919 1.25577 1.01566 1.00134 0.99468 1.69821 1.43968 1.26300 1.21897 0.85139 0.78027 0.79219 0.77382 1.21675 1.21937 1.19213 1.21470 0.95086 0.97880 0.85961 0.88799 0.90626 0.86451 0.90317 0.90111 0.93266 0.93814 0.91536 0.86066 0.85878 0.90148 0.85807 0.91943 0.87969 0.93776 0.92709 0.79578 0.93953 0.91952 0.92498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.69 13.22 67.78 0.90 -3.80 16 2 C -0.14 -3.04 6.76 25.64 0.17 -2.86 16 3 C -0.05 -0.85 1.82 -11.54 -0.02 -0.87 16 4 H 0.05 1.29 7.60 -2.39 -0.02 1.27 16 5 C -0.11 -1.29 5.39 30.60 0.16 -1.12 16 6 C -0.15 -2.06 9.73 71.98 0.70 -1.36 16 7 C -0.12 -1.98 3.51 29.85 0.10 -1.88 16 8 C 0.50 13.98 7.45 87.66 0.65 14.63 16 9 O -0.58 -21.89 13.58 -3.04 -0.04 -21.93 16 10 N -0.61 -16.83 2.97 -818.83 -2.43 -19.27 16 11 C 0.10 1.90 6.34 86.36 0.55 2.44 16 12 C -0.12 -2.67 6.08 30.67 0.19 -2.48 16 13 C -0.13 -4.26 5.47 30.62 0.17 -4.09 16 14 C 0.17 6.88 2.92 45.08 0.13 7.02 16 15 H 0.03 1.28 8.08 -2.39 -0.02 1.26 16 16 N -0.74 -38.54 5.13 -322.52 -1.65 -40.19 16 17 C -0.24 -13.69 9.93 84.03 0.83 -12.85 16 18 H 0.07 4.01 7.83 -2.91 -0.02 3.99 16 19 C -0.08 -4.41 5.50 84.86 0.47 -3.95 16 20 N -0.97 -60.57 13.06 21.65 0.28 -60.29 16 21 Si 0.97 47.05 29.55 68.60 2.03 49.07 16 22 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 23 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 24 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 25 C 0.12 4.46 5.90 86.38 0.51 4.97 16 26 H 0.09 2.15 8.06 -2.91 -0.02 2.12 16 27 H 0.08 2.15 7.83 -2.91 -0.02 2.13 16 28 H 0.12 2.03 8.06 -2.91 -0.02 2.01 16 29 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.05 0.74 7.38 -2.39 -0.02 0.72 16 32 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.12 1.35 7.69 -2.39 -0.02 1.33 16 35 H 0.12 1.28 7.94 -2.39 -0.02 1.27 16 36 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.12 1.21 5.93 -2.39 -0.01 1.20 16 38 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.37 20.87 7.80 -92.71 -0.72 20.15 16 43 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 44 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 45 H 0.06 2.49 7.01 -2.39 -0.02 2.47 16 Total: -1.00 -73.71 356.57 3.92 -69.79 By element: Atomic # 1 Polarization: 28.79 SS G_CDS: 0.22 Total: 29.01 kcal Atomic # 6 Polarization: -11.71 SS G_CDS: 5.52 Total: -6.20 kcal Atomic # 7 Polarization: -115.95 SS G_CDS: -3.80 Total: -119.75 kcal Atomic # 8 Polarization: -21.89 SS G_CDS: -0.04 Total: -21.93 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 2.03 Total: 49.07 kcal Total: -73.71 3.92 -69.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209182763.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.030 kcal (2) G-P(sol) polarization free energy of solvation -73.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds