Wall clock time and date at job start Tue Mar 31 2020 03:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50705 * 119.99789 * 2 1 4 4 H 1.08992 * 109.46904 * 0.02562 * 3 2 1 5 5 C 1.53008 * 109.46754 * 120.00700 * 3 2 1 6 6 C 1.53002 * 109.46945 * 294.99755 * 5 3 2 7 7 C 1.53004 * 109.47110 * 240.00252 * 3 2 1 8 8 C 1.50701 * 109.46951 * 65.00331 * 7 3 2 9 9 O 1.21284 * 119.99947 * 359.97438 * 8 7 3 10 10 N 1.34771 * 119.99942 * 179.97438 * 8 7 3 11 11 C 1.46931 * 120.63154 * 0.02562 * 10 8 7 12 12 C 1.53191 * 108.76527 * 126.36003 * 11 10 8 13 13 C 1.53046 * 109.30997 * 54.65907 * 12 11 10 14 14 C 1.53039 * 109.52798 * 298.61471 * 13 12 11 15 15 H 1.09000 * 109.49863 * 301.42271 * 14 13 12 16 16 N 1.46495 * 109.49863 * 181.35646 * 14 13 12 17 17 C 1.36933 * 120.00178 * 84.99859 * 16 14 13 18 18 H 1.08001 * 120.00307 * 0.02562 * 17 16 14 19 19 C 1.38810 * 120.00181 * 179.97438 * 17 16 14 20 20 N 1.31620 * 120.00027 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 120.00075 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47030 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.46898 * 120.00059 * 21 19 17 24 24 H 1.48504 * 109.47050 * 240.00021 * 21 19 17 25 25 C 1.46919 * 120.63234 * 180.02562 * 10 8 7 26 26 H 1.08008 * 119.99624 * 179.97438 * 1 2 3 27 27 H 1.07999 * 120.00258 * 359.97438 * 1 2 3 28 28 H 1.08004 * 120.00673 * 180.02562 * 2 1 3 29 29 H 1.08997 * 109.47045 * 55.00012 * 5 3 2 30 30 H 1.08998 * 109.46958 * 175.00278 * 5 3 2 31 31 H 1.08995 * 109.47034 * 180.02562 * 6 5 3 32 32 H 1.08996 * 109.47197 * 300.00736 * 6 5 3 33 33 H 1.09003 * 109.46875 * 59.99979 * 6 5 3 34 34 H 1.08997 * 109.47026 * 304.99760 * 7 3 2 35 35 H 1.09001 * 109.46757 * 184.99989 * 7 3 2 36 36 H 1.08998 * 109.58959 * 246.15740 * 11 10 8 37 37 H 1.09003 * 109.58181 * 6.44223 * 11 10 8 38 38 H 1.08998 * 109.50939 * 294.70294 * 12 11 10 39 39 H 1.09003 * 109.48831 * 174.59930 * 12 11 10 40 40 H 1.09002 * 109.46115 * 178.59924 * 13 12 11 41 41 H 1.09004 * 109.45806 * 58.62809 * 13 12 11 42 42 H 0.96998 * 119.99986 * 264.99650 * 16 14 13 43 43 H 0.97003 * 120.00129 * 179.97438 * 20 19 17 44 44 H 1.08997 * 109.59005 * 113.84256 * 25 10 8 45 45 H 1.09002 * 109.70256 * 353.48493 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 1 1.3551 2.1335 0.0005 5 6 2.9432 1.3861 1.2492 6 6 2.0566 1.4306 2.4954 7 6 2.9430 1.3863 -1.2493 8 6 2.0696 1.4302 -2.4766 9 8 0.8625 1.3992 -2.3632 10 7 2.6298 1.5040 -3.7001 11 6 4.0906 1.5418 -3.8536 12 6 4.5137 0.4297 -4.8185 13 6 3.7401 0.5770 -6.1308 14 6 2.2406 0.4359 -5.8593 15 1 2.0429 -0.5348 -5.4047 16 7 1.5030 0.5446 -7.1203 17 6 1.3302 -0.5606 -7.9100 18 1 1.7373 -1.5127 -7.6030 19 6 0.6308 -0.4577 -9.1046 20 7 0.1333 0.7022 -9.4781 21 14 0.3957 -1.9654 -10.1822 22 1 1.0468 -3.1371 -9.5430 23 1 -1.0554 -2.2340 -10.3478 24 1 1.0094 -1.7235 -11.5127 25 6 1.7916 1.5482 -4.9059 26 1 -0.5400 -0.9354 -0.0004 27 1 -0.5400 0.9353 0.0004 28 1 1.8501 -0.9353 -0.0004 29 1 3.5907 0.5104 1.2950 30 1 3.5540 2.2878 1.2056 31 1 2.6832 1.4887 3.3853 32 1 1.4091 2.3061 2.4495 33 1 1.4457 0.5289 2.5389 34 1 3.5905 0.5107 -1.2952 35 1 3.5539 2.2880 -1.2056 36 1 4.3909 2.5091 -4.2563 37 1 4.5639 1.3867 -2.8840 38 1 4.2944 -0.5410 -4.3739 39 1 5.5829 0.5069 -5.0159 40 1 4.0574 -0.1982 -6.8283 41 1 3.9404 1.5577 -6.5623 42 1 1.1370 1.3996 -7.3959 43 1 -0.3551 0.7742 -10.3131 44 1 1.9046 2.5160 -5.3943 45 1 0.7472 1.3963 -4.6331 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209182765.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:07:09 Heat of formation + Delta-G solvation = -22.385981 kcal Electronic energy + Delta-G solvation = -22504.050560 eV Core-core repulsion = 19328.557194 eV Total energy + Delta-G solvation = -3175.493366 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.08676 -37.77131 -36.41158 -34.46289 -32.22727 -31.79376 -31.29590 -30.42269 -28.22288 -25.60103 -24.41326 -23.38221 -22.02055 -21.74376 -20.16668 -19.54367 -18.67921 -17.17247 -16.90733 -15.68410 -15.59115 -14.94585 -14.58084 -14.54618 -14.08433 -14.00378 -13.76888 -13.56184 -13.24507 -13.06986 -12.87659 -12.55706 -12.30616 -12.18834 -11.88340 -11.44625 -11.33055 -11.09972 -10.92720 -10.91106 -10.89337 -10.62873 -10.55671 -10.39045 -10.32415 -10.04147 -9.73590 -9.55340 -9.04263 -8.91039 -8.31448 -6.97898 -5.77365 -3.06781 2.49649 2.87768 3.20018 3.43293 3.49058 3.51136 4.50440 4.59125 4.65471 4.73338 4.94117 5.05308 5.11067 5.17563 5.28191 5.32380 5.35883 5.39127 5.51851 5.55372 5.60508 5.66784 5.74932 5.77515 5.79611 5.80543 5.85269 5.99226 6.06274 6.08110 6.18883 6.19940 6.27560 6.40950 6.57263 6.74876 6.79243 6.90912 6.98497 7.06484 7.67395 7.70143 8.40004 8.44517 9.51903 10.07666 10.42718 11.45256 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.026021 B = 0.003627 C = 0.003391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.802217 B = 7717.322471 C = 8254.309041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.154 4.154 3 C -0.044 4.044 4 H 0.080 0.920 5 C -0.116 4.116 6 C -0.151 4.151 7 C -0.132 4.132 8 C 0.510 3.490 9 O -0.534 6.534 10 N -0.609 5.609 11 C 0.108 3.892 12 C -0.133 4.133 13 C -0.137 4.137 14 C 0.169 3.831 15 H 0.049 0.951 16 N -0.722 5.722 17 C -0.237 4.237 18 H 0.071 0.929 19 C -0.013 4.013 20 N -0.932 5.932 21 Si 0.907 3.093 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.292 1.292 25 C 0.107 3.893 26 H 0.089 0.911 27 H 0.095 0.905 28 H 0.100 0.900 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.066 0.934 37 H 0.078 0.922 38 H 0.062 0.938 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.056 0.944 42 H 0.384 0.616 43 H 0.255 0.745 44 H 0.062 0.938 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.984 2.644 20.740 23.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.172 4.172 3 C -0.063 4.063 4 H 0.099 0.901 5 C -0.153 4.153 6 C -0.208 4.208 7 C -0.172 4.172 8 C 0.298 3.702 9 O -0.410 6.410 10 N -0.343 5.343 11 C -0.015 4.015 12 C -0.172 4.172 13 C -0.178 4.178 14 C 0.058 3.942 15 H 0.067 0.933 16 N -0.363 5.363 17 C -0.368 4.368 18 H 0.089 0.911 19 C -0.209 4.209 20 N -0.580 5.580 21 Si 0.738 3.262 22 H -0.206 1.206 23 H -0.218 1.218 24 H -0.219 1.219 25 C -0.016 4.016 26 H 0.108 0.892 27 H 0.113 0.887 28 H 0.118 0.882 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.110 0.890 35 H 0.109 0.891 36 H 0.085 0.915 37 H 0.097 0.903 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.075 0.925 42 H 0.218 0.782 43 H 0.065 0.935 44 H 0.080 0.920 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 9.299 2.458 20.713 22.837 hybrid contribution -0.091 -0.580 -1.030 1.186 sum 9.208 1.878 19.683 21.811 Atomic orbital electron populations 1.23692 0.95939 1.01309 0.98889 1.22596 0.95998 0.96980 1.01600 1.20162 0.96555 0.97142 0.92437 0.90142 1.21540 0.97857 1.01819 0.94096 1.21758 0.99824 1.02192 0.97055 1.21735 0.98729 1.03877 0.92903 1.20601 0.89039 0.76282 0.84326 1.90704 1.14770 1.49433 1.86116 1.48145 1.06943 1.72982 1.06196 1.21743 0.80168 0.99509 1.00063 1.21934 0.99833 0.98402 0.97063 1.22277 0.98051 1.02028 0.95399 1.20477 0.90277 0.96070 0.87395 0.93342 1.42321 1.64216 1.10370 1.19350 1.19250 1.28632 0.89167 0.99798 0.91144 1.24750 1.00857 0.96906 0.98387 1.69673 1.41560 1.22872 1.23898 0.86120 0.77482 0.82138 0.80470 1.20558 1.21823 1.21869 1.21946 0.96018 0.99380 0.84247 0.89242 0.88660 0.88188 0.91890 0.91927 0.93034 0.92832 0.92359 0.89041 0.89103 0.91550 0.90332 0.91926 0.91434 0.91645 0.92522 0.78220 0.93520 0.91975 0.89006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.02 13.22 29.02 0.38 -1.64 16 2 C -0.15 -1.78 6.76 -36.02 -0.24 -2.02 16 3 C -0.04 -0.45 1.82 -91.76 -0.17 -0.62 16 4 H 0.08 0.95 7.60 -51.93 -0.39 0.55 16 5 C -0.12 -0.89 5.39 -26.73 -0.14 -1.04 16 6 C -0.15 -1.15 9.73 37.16 0.36 -0.79 16 7 C -0.13 -1.34 3.51 -27.88 -0.10 -1.44 16 8 C 0.51 7.52 7.45 -10.99 -0.08 7.43 16 9 O -0.53 -9.82 13.58 5.55 0.08 -9.75 16 10 N -0.61 -8.95 2.97 -172.75 -0.51 -9.46 16 11 C 0.11 1.22 6.34 -3.71 -0.02 1.20 16 12 C -0.13 -1.68 6.08 -26.61 -0.16 -1.85 16 13 C -0.14 -2.35 5.47 -26.69 -0.15 -2.49 16 14 C 0.17 3.41 2.92 -67.80 -0.20 3.21 16 15 H 0.05 1.06 8.08 -51.93 -0.42 0.64 16 16 N -0.72 -18.22 5.13 -53.30 -0.27 -18.50 16 17 C -0.24 -6.63 9.93 -15.06 -0.15 -6.78 16 18 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 19 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 20 N -0.93 -28.30 13.06 55.49 0.72 -27.57 16 21 Si 0.91 22.56 29.55 -169.99 -5.02 17.54 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 24 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 25 C 0.11 1.94 5.90 -3.70 -0.02 1.92 16 26 H 0.09 1.05 8.06 -52.48 -0.42 0.62 16 27 H 0.10 1.25 7.83 -52.49 -0.41 0.84 16 28 H 0.10 1.08 8.06 -52.48 -0.42 0.65 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.48 7.38 -51.93 -0.38 0.09 16 34 H 0.09 0.80 7.69 -51.93 -0.40 0.40 16 35 H 0.09 0.73 7.94 -51.93 -0.41 0.31 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.08 0.65 5.93 -51.93 -0.31 0.35 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.38 10.28 7.80 -40.82 -0.32 9.96 16 43 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 44 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.09 1.89 7.01 -51.93 -0.36 1.53 16 LS Contribution 356.57 15.07 5.37 5.37 Total: -1.00 -31.87 356.57 -8.45 -40.32 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -8.03 Total: 7.42 kcal Atomic # 6 Polarization: -4.59 SS G_CDS: -0.79 Total: -5.38 kcal Atomic # 7 Polarization: -55.47 SS G_CDS: -0.06 Total: -55.53 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.08 Total: -9.75 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.87 -8.45 -40.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209182765.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.938 kcal (2) G-P(sol) polarization free energy of solvation -31.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds