Wall clock time and date at job start Tue Mar 31 2020 03:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50705 * 119.99789 * 2 1 4 4 H 1.08992 * 109.46904 * 0.02562 * 3 2 1 5 5 C 1.53008 * 109.46754 * 120.00700 * 3 2 1 6 6 C 1.53002 * 109.46945 * 294.99755 * 5 3 2 7 7 C 1.53004 * 109.47110 * 240.00252 * 3 2 1 8 8 C 1.50701 * 109.46951 * 65.00331 * 7 3 2 9 9 O 1.21284 * 119.99947 * 359.97438 * 8 7 3 10 10 N 1.34771 * 119.99942 * 179.97438 * 8 7 3 11 11 C 1.46931 * 120.63154 * 0.02562 * 10 8 7 12 12 C 1.53191 * 108.76527 * 126.36003 * 11 10 8 13 13 C 1.53046 * 109.30997 * 54.65907 * 12 11 10 14 14 C 1.53039 * 109.52798 * 298.61471 * 13 12 11 15 15 H 1.09000 * 109.49863 * 301.42271 * 14 13 12 16 16 N 1.46495 * 109.49863 * 181.35646 * 14 13 12 17 17 C 1.36933 * 120.00178 * 84.99859 * 16 14 13 18 18 H 1.08001 * 120.00307 * 0.02562 * 17 16 14 19 19 C 1.38810 * 120.00181 * 179.97438 * 17 16 14 20 20 N 1.31620 * 120.00027 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 120.00075 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47030 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.46898 * 120.00059 * 21 19 17 24 24 H 1.48504 * 109.47050 * 240.00021 * 21 19 17 25 25 C 1.46919 * 120.63234 * 180.02562 * 10 8 7 26 26 H 1.08008 * 119.99624 * 179.97438 * 1 2 3 27 27 H 1.07999 * 120.00258 * 359.97438 * 1 2 3 28 28 H 1.08004 * 120.00673 * 180.02562 * 2 1 3 29 29 H 1.08997 * 109.47045 * 55.00012 * 5 3 2 30 30 H 1.08998 * 109.46958 * 175.00278 * 5 3 2 31 31 H 1.08995 * 109.47034 * 180.02562 * 6 5 3 32 32 H 1.08996 * 109.47197 * 300.00736 * 6 5 3 33 33 H 1.09003 * 109.46875 * 59.99979 * 6 5 3 34 34 H 1.08997 * 109.47026 * 304.99760 * 7 3 2 35 35 H 1.09001 * 109.46757 * 184.99989 * 7 3 2 36 36 H 1.08998 * 109.58959 * 246.15740 * 11 10 8 37 37 H 1.09003 * 109.58181 * 6.44223 * 11 10 8 38 38 H 1.08998 * 109.50939 * 294.70294 * 12 11 10 39 39 H 1.09003 * 109.48831 * 174.59930 * 12 11 10 40 40 H 1.09002 * 109.46115 * 178.59924 * 13 12 11 41 41 H 1.09004 * 109.45806 * 58.62809 * 13 12 11 42 42 H 0.96998 * 119.99986 * 264.99650 * 16 14 13 43 43 H 0.97003 * 120.00129 * 179.97438 * 20 19 17 44 44 H 1.08997 * 109.59005 * 113.84256 * 25 10 8 45 45 H 1.09002 * 109.70256 * 353.48493 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 1 1.3551 2.1335 0.0005 5 6 2.9432 1.3861 1.2492 6 6 2.0566 1.4306 2.4954 7 6 2.9430 1.3863 -1.2493 8 6 2.0696 1.4302 -2.4766 9 8 0.8625 1.3992 -2.3632 10 7 2.6298 1.5040 -3.7001 11 6 4.0906 1.5418 -3.8536 12 6 4.5137 0.4297 -4.8185 13 6 3.7401 0.5770 -6.1308 14 6 2.2406 0.4359 -5.8593 15 1 2.0429 -0.5348 -5.4047 16 7 1.5030 0.5446 -7.1203 17 6 1.3302 -0.5606 -7.9100 18 1 1.7373 -1.5127 -7.6030 19 6 0.6308 -0.4577 -9.1046 20 7 0.1333 0.7022 -9.4781 21 14 0.3957 -1.9654 -10.1822 22 1 1.0468 -3.1371 -9.5430 23 1 -1.0554 -2.2340 -10.3478 24 1 1.0094 -1.7235 -11.5127 25 6 1.7916 1.5482 -4.9059 26 1 -0.5400 -0.9354 -0.0004 27 1 -0.5400 0.9353 0.0004 28 1 1.8501 -0.9353 -0.0004 29 1 3.5907 0.5104 1.2950 30 1 3.5540 2.2878 1.2056 31 1 2.6832 1.4887 3.3853 32 1 1.4091 2.3061 2.4495 33 1 1.4457 0.5289 2.5389 34 1 3.5905 0.5107 -1.2952 35 1 3.5539 2.2880 -1.2056 36 1 4.3909 2.5091 -4.2563 37 1 4.5639 1.3867 -2.8840 38 1 4.2944 -0.5410 -4.3739 39 1 5.5829 0.5069 -5.0159 40 1 4.0574 -0.1982 -6.8283 41 1 3.9404 1.5577 -6.5623 42 1 1.1370 1.3996 -7.3959 43 1 -0.3551 0.7742 -10.3131 44 1 1.9046 2.5160 -5.3943 45 1 0.7472 1.3963 -4.6331 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001209182765.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:07:08 Heat of formation + Delta-G solvation = -41.823175 kcal Electronic energy + Delta-G solvation = -22504.893420 eV Core-core repulsion = 19328.557194 eV Total energy + Delta-G solvation = -3176.336226 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.25200 -38.98069 -37.42252 -36.17929 -33.87439 -32.74634 -32.56477 -31.51515 -29.81585 -26.69002 -26.02223 -24.73852 -23.35294 -22.49554 -21.53813 -20.52296 -19.90333 -19.12879 -18.04120 -16.88646 -16.78000 -16.47026 -15.80659 -15.60935 -15.35708 -15.30481 -15.04534 -14.81926 -14.54286 -14.21027 -14.18294 -13.67372 -13.61532 -12.99539 -12.95317 -12.90175 -12.81071 -12.33528 -12.25121 -12.11030 -12.05966 -11.99183 -11.82436 -11.70227 -11.67237 -11.56621 -11.32457 -10.93657 -10.72459 -10.00937 -9.58109 -9.04320 -7.97897 -5.27517 1.44327 1.45809 1.55510 1.55576 1.76225 2.05171 2.54486 3.35143 3.60013 3.81179 3.86879 3.94466 4.03090 4.11646 4.15845 4.31286 4.37580 4.39711 4.43136 4.50069 4.57378 4.65133 4.68863 4.80621 4.83301 4.86213 4.93508 5.03855 5.08326 5.09766 5.11211 5.19347 5.22679 5.41230 5.43043 5.44270 5.50792 5.55250 5.61236 5.85335 6.07304 6.24107 6.56036 7.29334 7.30672 8.02843 8.27039 9.25723 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.026021 B = 0.003627 C = 0.003391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.802217 B = 7717.322471 C = 8254.309041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.147 4.147 3 C -0.045 4.045 4 H 0.058 0.942 5 C -0.108 4.108 6 C -0.153 4.153 7 C -0.122 4.122 8 C 0.500 3.500 9 O -0.581 6.581 10 N -0.609 5.609 11 C 0.105 3.895 12 C -0.124 4.124 13 C -0.128 4.128 14 C 0.168 3.832 15 H 0.028 0.972 16 N -0.737 5.737 17 C -0.238 4.238 18 H 0.073 0.927 19 C -0.075 4.075 20 N -0.969 5.969 21 Si 0.973 3.027 22 H -0.266 1.266 23 H -0.295 1.295 24 H -0.290 1.290 25 C 0.120 3.880 26 H 0.090 0.910 27 H 0.079 0.921 28 H 0.113 0.887 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.065 0.935 32 H 0.045 0.955 33 H 0.046 0.954 34 H 0.119 0.881 35 H 0.126 0.874 36 H 0.081 0.919 37 H 0.124 0.876 38 H 0.061 0.939 39 H 0.102 0.898 40 H 0.043 0.957 41 H 0.055 0.945 42 H 0.373 0.627 43 H 0.252 0.748 44 H 0.063 0.937 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.382 2.267 22.483 26.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.165 4.165 3 C -0.064 4.064 4 H 0.076 0.924 5 C -0.145 4.145 6 C -0.211 4.211 7 C -0.162 4.162 8 C 0.290 3.710 9 O -0.460 6.460 10 N -0.343 5.343 11 C -0.016 4.016 12 C -0.163 4.163 13 C -0.168 4.168 14 C 0.059 3.941 15 H 0.046 0.954 16 N -0.377 5.377 17 C -0.370 4.370 18 H 0.090 0.910 19 C -0.268 4.268 20 N -0.620 5.620 21 Si 0.802 3.198 22 H -0.191 1.191 23 H -0.222 1.222 24 H -0.217 1.217 25 C -0.004 4.004 26 H 0.108 0.892 27 H 0.098 0.902 28 H 0.131 0.869 29 H 0.096 0.904 30 H 0.100 0.900 31 H 0.084 0.916 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.137 0.863 35 H 0.144 0.856 36 H 0.099 0.901 37 H 0.142 0.858 38 H 0.080 0.920 39 H 0.120 0.880 40 H 0.062 0.938 41 H 0.073 0.927 42 H 0.204 0.796 43 H 0.060 0.940 44 H 0.081 0.919 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 12.763 2.067 22.507 25.956 hybrid contribution -1.150 -0.452 -1.505 1.947 sum 11.613 1.615 21.002 24.053 Atomic orbital electron populations 1.23681 0.96793 1.00705 1.01267 1.22899 0.95746 0.98363 0.99456 1.20186 0.96651 0.95374 0.94141 0.92382 1.21508 0.97431 1.03432 0.92145 1.21775 0.99961 1.01343 0.97986 1.21812 0.98102 1.06725 0.89530 1.21599 0.89117 0.74896 0.85385 1.90701 1.17220 1.51322 1.86762 1.48255 1.08281 1.72782 1.04940 1.22080 0.77670 0.99688 1.02202 1.21897 1.01007 0.99041 0.94352 1.22073 0.95718 1.01131 0.97923 1.20638 0.92036 0.95787 0.85679 0.95394 1.42517 1.65116 1.09211 1.20842 1.19576 1.27534 0.89906 0.99985 0.90952 1.25572 1.01399 0.99759 1.00030 1.69826 1.42907 1.24927 1.24303 0.85078 0.76980 0.79190 0.78546 1.19078 1.22191 1.21675 1.21472 0.95002 0.98416 0.85534 0.89162 0.90231 0.86911 0.90398 0.90038 0.91551 0.93587 0.93454 0.86313 0.85622 0.90070 0.85822 0.92021 0.87973 0.93785 0.92671 0.79566 0.93959 0.91877 0.92496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.88 13.22 67.78 0.90 -3.98 16 2 C -0.15 -3.24 6.76 25.65 0.17 -3.07 16 3 C -0.04 -0.81 1.82 -11.53 -0.02 -0.83 16 4 H 0.06 1.33 7.60 -2.39 -0.02 1.31 16 5 C -0.11 -1.27 5.39 30.60 0.16 -1.11 16 6 C -0.15 -2.03 9.73 71.98 0.70 -1.33 16 7 C -0.12 -1.98 3.51 29.85 0.10 -1.87 16 8 C 0.50 13.94 7.45 87.66 0.65 14.59 16 9 O -0.58 -21.82 13.58 -3.04 -0.04 -21.86 16 10 N -0.61 -16.79 2.97 -818.85 -2.43 -19.23 16 11 C 0.10 1.89 6.34 86.36 0.55 2.44 16 12 C -0.12 -2.67 6.08 30.67 0.19 -2.49 16 13 C -0.13 -4.26 5.47 30.62 0.17 -4.09 16 14 C 0.17 6.90 2.92 45.08 0.13 7.03 16 15 H 0.03 1.25 8.08 -2.39 -0.02 1.23 16 16 N -0.74 -38.50 5.13 -322.53 -1.65 -40.15 16 17 C -0.24 -13.60 9.93 84.03 0.83 -12.76 16 18 H 0.07 4.01 7.83 -2.91 -0.02 3.99 16 19 C -0.08 -4.42 5.50 84.86 0.47 -3.96 16 20 N -0.97 -60.51 13.06 21.65 0.28 -60.23 16 21 Si 0.97 47.09 29.55 68.60 2.03 49.12 16 22 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 23 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 24 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 25 C 0.12 4.44 5.90 86.38 0.51 4.95 16 26 H 0.09 2.23 8.06 -2.91 -0.02 2.20 16 27 H 0.08 2.27 7.83 -2.91 -0.02 2.25 16 28 H 0.11 2.18 8.06 -2.91 -0.02 2.16 16 29 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.08 0.70 8.14 -2.39 -0.02 0.69 16 31 H 0.07 0.68 8.14 -2.39 -0.02 0.67 16 32 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.05 0.72 7.38 -2.39 -0.02 0.70 16 34 H 0.12 1.37 7.69 -2.39 -0.02 1.35 16 35 H 0.13 1.25 7.94 -2.39 -0.02 1.23 16 36 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.12 1.21 5.93 -2.39 -0.01 1.19 16 38 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.37 20.85 7.80 -92.71 -0.72 20.12 16 43 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 44 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 45 H 0.06 2.49 7.01 -2.39 -0.02 2.47 16 Total: -1.00 -73.66 356.57 3.91 -69.74 By element: Atomic # 1 Polarization: 28.88 SS G_CDS: 0.22 Total: 29.09 kcal Atomic # 6 Polarization: -12.00 SS G_CDS: 5.52 Total: -6.48 kcal Atomic # 7 Polarization: -115.81 SS G_CDS: -3.80 Total: -119.61 kcal Atomic # 8 Polarization: -21.82 SS G_CDS: -0.04 Total: -21.86 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 2.03 Total: 49.12 kcal Total: -73.66 3.91 -69.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209182765.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.921 kcal (2) G-P(sol) polarization free energy of solvation -73.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds